mRNA_H-elongata_contig6126.13674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6126.13674.1
Unique NamemRNA_H-elongata_contig6126.13674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: D7FP20_ECTSI (Glutamate--cysteine ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP20_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 4.710e-73
Identity = 124/179 (69.27%), Postives = 150/179 (83.80%), Query Frame = 1 
Query:   73 GGASKEVYESSLCDFDPQTGLEEMTLSEIMEGKGNFPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKFVKKAAEKRNLREKEEYSVCG 609
            GG   E+Y  S CD DPQ+GLEEMT+ +I+EGKG++PGL+PLV+AY+EYINAD STI  VE YL+HLRKRAAGEIMTTAAWLR FVT+HP Y  DS ++DEIAYDLV ACQEIGLGKRACP+LLG+  I EVT++EAWDVVLDSSK+E+Q RN+LIKKFVK+AAEK+  R+ ++    G
Sbjct:  552 GGEEGEIY--SPCDNDPQSGLEEMTVLQILEGKGDYPGLIPLVHAYLEYINADSSTIKDVELYLDHLRKRAAGEIMTTAAWLRKFVTSHPGYGKDSAVTDEIAYDLVQACQEIGLGKRACPELLGDRTIREVTRDEAWDVVLDSSKMEVQYRNRLIKKFVKRAAEKQRARDAQQQGGVG 728
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A7S3LCF6_9STRA (Glutamate--cysteine ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCF6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.880e-41
Identity = 75/150 (50.00%), Postives = 109/150 (72.67%), Query Frame = 1 
Query:  118 DPQTGLEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKFVKKAA 564
            D +   EEMT+ EIM GKG+ FPGL+PLV AY++YIN D  T + +  YLE + KRA+GE++T A W+R FV  HPAYK DSV+SDEIAYDL++AC++IGLGK   P+LLG++ I  ++ + A+DV LDS++ +     +L++++  + A
Sbjct:  135 DEENAFEEMTMEEIMSGKGDYFPGLIPLVFAYLDYINCDHVTRERLTTYLEFIEKRASGELVTPATWMRKFVRNHPAYKGDSVVSDEIAYDLMIACRDIGLGKLHVPELLGDVKIDLISPDGAYDVKLDSTRAQNDRVMELLRRYTNRKA 284
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A7S1V5E5_9STRA (Glutamate--cysteine ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5E5_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.990e-40
Identity = 72/143 (50.35%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:  124 QTGLEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKF 549
            +   EEMT++EIM GKG+ FPGL+PLV AY+++IN D  T   VEKYL+ + KRA G+++T A W+R++V +HPAYK DSV++DEIAYDL+  C+EIGLG+   P+LL  + I E+T E A++V LDS +++ +   QL++++
Sbjct:  122 ENAYEEMTMAEIMTGKGDYFPGLIPLVFAYLDHINCDSVTRQKVEKYLDFIEKRATGKLLTPATWMRNYVRSHPAYKGDSVVTDEIAYDLMQTCKEIGLGQLHVPELLDGVKIDEITAEGAYEVKLDSQRLQNERILQLLRRY 264
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A7S0GCH6_9STRA (Glutamate--cysteine ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCH6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.620e-37
Identity = 72/159 (45.28%), Postives = 110/159 (69.18%), Query Frame = 1 
Query:  118 DPQTGLEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARN-QLIKKFVKKAAEKRNLREK 588
            + +   EEMT++EIM GKG+ FPGL+PL+ AY++YI  D  T+  V +Y++ + KRA+G ++T A W+R FV  HP YK+DSVI++ IAYDL+VAC+EIG G R  P+LLG++   ++T E A+DV LDS  +    +   L+K++  + + +R+  EK
Sbjct:  120 EEENSYEEMTMAEIMTGKGDYFPGLIPLIRAYLDYIKCDTFTLARVNQYMDLIEKRASGVLVTPATWMRKFVREHPGYKNDSVITEAIAYDLMVACKEIGEGTRHVPELLGDLTFDQITTEGAYDVKLDSKLVHDNCQLLDLLKRYSGRISSERSTNEK 278
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A835ZCQ8_9STRA (Glutamate--cysteine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.540e-37
Identity = 76/140 (54.29%), Postives = 105/140 (75.00%), Query Frame = 1 
Query:  139 EMTLSEIMEGK---GNFPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKF 549
            EMT+ EI+ G+   G +PGL+PLV AY++YI  D +T + VE YLE LR+RA+GE+MT AAW+R FVT HPAY  DSV+SDE+AYDL++A +++G G+RA P+LLG  VI  V  E A+DV L S++I+  AR +LI ++
Sbjct:  563 EMTILEILMGQNGGGGYPGLIPLVYAYLDYIGTDAATFERVEAYLELLRRRASGEVMTAAAWMRRFVTRHPAYCGDSVVSDEVAYDLMLAARDVGEGRRAAPELLGPEVIEPVLPEGAFDVPLASARIDAAARRELIDRY 702
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A7S1QMV4_ALECA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QMV4_ALECA)

HSP 1 Score: 142 bits (357), Expect = 5.190e-37
Identity = 70/148 (47.30%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:   85 KEVYESSLCDFDPQTG------LEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSS 507
            K V    +C  +P+         EEMT+ E+M GKG+ FPGLVPL  AY+E+I  D  +   ++ YL  + KRAAGE++T AAW+R+FV  HP YK DSV++  IAYDL+ AC EIG G+R CP+L G + I  + QE  +D+ L SS
Sbjct:   23 KHVIPQHMCQLEPRPATTVSDSFEEMTMGEVMNGKGSYFPGLVPLCYAYLEHIGCDSVSFAHLKTYLNFVSKRAAGELLTPAAWMRNFVRQHPDYKGDSVVTQGIAYDLMHACDEIGRGQRRCPELHGEVYIEPIVQEGTYDIPLKSS 170
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A836CE91_9STRA (Glutamate--cysteine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE91_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.330e-37
Identity = 75/142 (52.82%), Postives = 103/142 (72.54%), Query Frame = 1 
Query:  127 TGLEEMTLSEIMEGKGNF-PGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKF 549
            TG EEMT+ EIM GKG++ PGL+PLV+AY+E+I  D  T   V +Y+E LRKRA+GE+ T A W+RDFVT+H  YK DSV++  IA DL+ AC++IG G+RAC +LLG++ I  V  E  +DV+L+S+K+   A   LI K+
Sbjct:  518 TGFEEMTIEEIMMGKGDYYPGLIPLVHAYLEHIGCDSETGSRVHEYMELLRKRASGELPTAATWMRDFVTSHSEYKQDSVVTPGIALDLMTACRDIGEGRRACAELLGDLAIRPVLPETGYDVLLNSNKVGRAAARGLIAKY 659
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: B7FYG6_PHATC (Glutamate--cysteine ligase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYG6_PHATC)

HSP 1 Score: 150 bits (379), Expect = 1.670e-36
Identity = 70/146 (47.95%), Postives = 106/146 (72.60%), Query Frame = 1 
Query:  124 QTGLEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKFVKK 558
            +   EEMT++EIM GKG+ FPGL+ L+ AY+++IN D  T+  +E YL  + KRA GE++T A W+R+FV  HPAY+ DS++SDEIAYDL++AC++IG GK   P+LLG+ +I  +T E A+DV LDS +++      L++++ K+
Sbjct:  587 ENSFEEMTMNEIMNGKGDHFPGLIVLILAYLDHINCDKVTLKRLENYLTFIAKRATGELVTPATWMRNFVRNHPAYEQDSILSDEIAYDLMIACRDIGQGKLHVPELLGDNIIDPITSEGAYDVKLDSKRVQNDRILDLLRQYTKR 732
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: D8LJD4_ECTSI (Glutamate--cysteine ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD4_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 5.040e-36
Identity = 80/164 (48.78%), Postives = 112/164 (68.29%), Query Frame = 1 
Query:   64 GGSGGASKEV-YESSLCDFDPQTGLEEMTLSEIMEGKGNF-PGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKF 549
            GG GG S  V  E   CD   Q G EEMT+ EIM GKG++ PGLVPLV AY+ +I  D +T+D V++Y+  + KRA+GE+ T+A+W+RDFV  HPAYK DSV+S+EIA+DLV+  + IG G++  P LLG + I  +  ++A+DV L S+K+       L+KK+
Sbjct:  546 GGDGGTSSAVDQEHKACDVHAQ-GHEEMTIEEIMLGKGDYYPGLVPLVYAYLGHIGCDAATMDTVDQYMILICKRASGELKTSASWIRDFVHEHPAYKQDSVVSEEIAHDLVMELRAIGEGEKHAPSLLGGLHISPIRPKQAYDVPLSSTKVSGSCLAFLVKKY 708
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BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Match: A0A7R9WEL6_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEL6_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.130e-35
Identity = 70/131 (53.44%), Postives = 99/131 (75.57%), Query Frame = 1 
Query:  124 QTGLEEMTLSEIMEGKGN-FPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAGEIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDLLGNIVIPEVTQEEAWDVVLDSSKI 513
            +    EMT++EIM GKG+ FPGL+PLV AY++YIN D  T   +++YL+ ++KRA GE++T A W+R+FV TH +YK DSV+SDEIAYDL+VAC+EIG G R  P+LLG++ I  +T   A+DV L+S ++
Sbjct:  823 ENSYAEMTMAEIMTGKGDYFPGLIPLVQAYLDYINCDSITRARIDQYLDFIQKRATGELVTPATWIRNFVRTHESYKGDSVVSDEIAYDLMVACKEIGEGIRHVPELLGDVKIKPITSAGAYDVKLESKRL 953
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6126.13674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP20_ECTSI4.710e-7369.27Glutamate--cysteine ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S3LCF6_9STRA1.880e-4150.00Glutamate--cysteine ligase n=1 Tax=Amphora coffeif... [more]
A0A7S1V5E5_9STRA4.990e-4050.35Glutamate--cysteine ligase n=1 Tax=Grammatophora o... [more]
A0A7S0GCH6_9STRA1.620e-3745.28Glutamate--cysteine ligase n=1 Tax=Proboscia inerm... [more]
A0A835ZCQ8_9STRA3.540e-3754.29Glutamate--cysteine ligase n=1 Tax=Tribonema minus... [more]
A0A7S1QMV4_ALECA5.190e-3747.30Glutamate--cysteine ligase (Fragment) n=1 Tax=Alex... [more]
A0A836CE91_9STRA7.330e-3752.82Glutamate--cysteine ligase n=1 Tax=Tribonema minus... [more]
B7FYG6_PHATC1.670e-3647.95Glutamate--cysteine ligase n=3 Tax=Phaeodactylum t... [more]
D8LJD4_ECTSI5.040e-3648.78Glutamate--cysteine ligase n=1 Tax=Ectocarpus sili... [more]
A0A7R9WEL6_9STRA1.130e-3553.44Glutamate--cysteine ligase (Fragment) n=1 Tax=Pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6126contigH-elongata_contig6126:6477..9589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue9e-33
Seed eggNOG ortholog2850.Phatr27240
Preferred nameGCLC
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
GOsGO:0000096,GO:0000166,GO:0000287,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000904,GO:0001101,GO:0001678,GO:0002009,GO:0002165,GO:0003008,GO:0003013,GO:0003018,GO:0003254,GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006355,GO:0006518,GO:0006520,GO:0006534,GO:0006536,GO:0006575,GO:0006732,GO:0006749,GO:0006750,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007584,GO:0008015,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009064,GO:0009069,GO:0009266,GO:0009408,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0014070,GO:0014823,GO:0015711,GO:0015833,GO:0016043,GO:0016595,GO:0016597,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0017109,GO:0019184,GO:0019219,GO:0019222,GO:0019725,GO:0019748,GO:0019752,GO:0019852,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030435,GO:0030554,GO:0030587,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031406,GO:0031667,GO:0032268,GO:0032269,GO:0032270,GO:0032354,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033500,GO:0034097,GO:0034284,GO:0034635,GO:0034641,GO:0034698,GO:0035107,GO:0035114,GO:0035120,GO:0035150,GO:0035220,GO:0035239,GO:0035295,GO:0035690,GO:0035728,GO:0035729,GO:0036094,GO:0042176,GO:0042221,GO:0042391,GO:0042398,GO:0042493,GO:0042542,GO:0042592,GO:0042593,GO:0042886,GO:0042939,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043523,GO:0043524,GO:0043531,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0044752,GO:0045454,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046677,GO:0046685,GO:0046686,GO:0046688,GO:0046872,GO:0046937,GO:0046938,GO:0046982,GO:0046983,GO:0048037,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050865,GO:0050866,GO:0050880,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051409,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051881,GO:0051900,GO:0055082,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061136,GO:0061564,GO:0061687,GO:0065007,GO:0065008,GO:0070555,GO:0070848,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071241,GO:0071248,GO:0071260,GO:0071276,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071371,GO:0071372,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071585,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071840,GO:0072337,GO:0072348,GO:0080090,GO:0090066,GO:0090702,GO:0097066,GO:0097067,GO:0097068,GO:0097069,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098754,GO:0098849,GO:0099120,GO:0104004,GO:0120036,GO:0120039,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1904386,GO:1904387,GO:1990170,GO:1990748,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000489,GO:2000490,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.Glutamate-cysteine ligase
EggNOG OGs2XBFY@2836,KOG3754@1,KOG3754@2759
EC6.3.2.2
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutamate cysteine ligase
Ec32 orthologEc-17_001900.1
Exons6
Model size1095
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6126.13674.1prot_H-elongata_contig6126.13674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6126 6618..9083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.4501135-UTR-H-elongata_contig6126:6476..66171622930988.4501135-UTR-H-elongata_contig6126:6476..6617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 6477..6617 +
1691679652.3538177-UTR-H-elongata_contig6126:6476..66171691679652.3538177-UTR-H-elongata_contig6126:6476..6617Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 6477..6617 +
1622930988.6556053-UTR-H-elongata_contig6126:9083..91951622930988.6556053-UTR-H-elongata_contig6126:9083..9195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 9084..9195 +
1691679652.4223351-UTR-H-elongata_contig6126:9083..91951691679652.4223351-UTR-H-elongata_contig6126:9083..9195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 9084..9195 +
1622930988.679895-UTR-H-elongata_contig6126:9227..95891622930988.679895-UTR-H-elongata_contig6126:9227..9589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 9228..9589 +
1691679652.434778-UTR-H-elongata_contig6126:9227..95891691679652.434778-UTR-H-elongata_contig6126:9227..9589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6126 9228..9589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.4907835-CDS-H-elongata_contig6126:6617..66471622930988.4907835-CDS-H-elongata_contig6126:6617..6647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 6618..6647 +
1691679652.371449-CDS-H-elongata_contig6126:6617..66471691679652.371449-CDS-H-elongata_contig6126:6617..6647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 6618..6647 +
1622930988.508109-CDS-H-elongata_contig6126:6901..69871622930988.508109-CDS-H-elongata_contig6126:6901..6987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 6902..6987 +
1691679652.3823888-CDS-H-elongata_contig6126:6901..69871691679652.3823888-CDS-H-elongata_contig6126:6901..6987Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 6902..6987 +
1622930988.5469508-CDS-H-elongata_contig6126:7495..76551622930988.5469508-CDS-H-elongata_contig6126:7495..7655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 7496..7655 +
1691679652.3908587-CDS-H-elongata_contig6126:7495..76551691679652.3908587-CDS-H-elongata_contig6126:7495..7655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 7496..7655 +
1622930988.5668306-CDS-H-elongata_contig6126:8434..85621622930988.5668306-CDS-H-elongata_contig6126:8434..8562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 8435..8562 +
1691679652.400147-CDS-H-elongata_contig6126:8434..85621691679652.400147-CDS-H-elongata_contig6126:8434..8562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 8435..8562 +
1622930988.6285725-CDS-H-elongata_contig6126:9007..90831622930988.6285725-CDS-H-elongata_contig6126:9007..9083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 9008..9083 +
1691679652.4135425-CDS-H-elongata_contig6126:9007..90831691679652.4135425-CDS-H-elongata_contig6126:9007..9083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 9008..9083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6126.13674.1

>prot_H-elongata_contig6126.13674.1 ID=prot_H-elongata_contig6126.13674.1|Name=mRNA_H-elongata_contig6126.13674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MTLSEIMEGKGNFPGLVPLVNAYMEYINADLSTIDIVEKYLEHLRKRAAG
EIMTTAAWLRDFVTTHPAYKHDSVISDEIAYDLVVACQEIGLGKRACPDL
LGNIVIPEVTQEEAWDVVLDSSKIEIQARNQLIKKFVKKAAEKRNLREKE
EYSVCGRNK*
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mRNA from alignment at H-elongata_contig6126:6477..9589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6126.13674.1 ID=mRNA_H-elongata_contig6126.13674.1|Name=mRNA_H-elongata_contig6126.13674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3113bp|location=Sequence derived from alignment at H-elongata_contig6126:6477..9589+ (Himanthalia elongata Himel1 dioecious)
GTGGATTACTCCGCCGAGGACGTGGAACCCGCCCCACCGTTCGCCACCAA
CGGCGATAAAGGAGGTGGTAGCGGCGGTGCGAGCAAAGAAGTCTACGAGT
CCAGTCTGTGCGATTTTGACCCTCAGACAGGGCTGGAGGAGATGACACTA
AGTGAAATCATGGAGGGCAAGGCAAGTCAGCATTTTATGCTCTTGATGCC
ATAAGCTGTGTCGATGTACTTTCTCCTCCGCCGAAGGGATTTTGTAATTT
AAGTCTTCTTTGCCGTGTCAACGTTTTCTTCGATATTTAACCTCAGTTTC
AATTTGCGAGAATCTCAATTCGCTCTCAGTCGTCTATTGCATCGCGTGCC
TCTCGCCTTGACCCGCACGCCGTTGTCACGTTTGCTCTCGGATTGCCTGC
GCGTGAACGTTTATGAGTTCTCCAGGGAAATTTCCCTGGGCTGGTTCCCC
TGGTGAACGCCTACATGGAGTACATCAACGCCGATCTCTCCACGATCGAT
ATAGTAGAGAAGTGAGTTCTCCCTCCTCCCATCGCCTCCCAGTCATGCAA
TACGTCAAGAAGTAGGATCAATAAAGAATGCGCTCCTGACCACCTTTCGG
TCCGTATTGAAGTTGCCCAGCTTGTTCTTGCATCCTAGCTACTCTCTATA
TTCATTATGGCCTTCTTCTGAAAAAAAAACCAATTCGCGGTGACTGACAA
CAATTTCATCGCCTACCTATCGAAGTGCAAATACGCAGCGCAGGGTGGGG
CATTACATTTCTTCGTCTTGCCGAAAGGACAGCTCTGTAAACGTTTTTCT
CCCATACAAAACAACTGGTTTACCGCCCGCTTCGAGGAGTAAAGCCGAGC
GATTACGCAGAAGAGTAGCATAGAGGCAGCCTACCCCGTCAAGGTATCCT
CCTCCCTCAACTCACTAATCCTGGTCGGCAGTATTTGTGGCTGATGGATA
AAACCGTCCCGAAATCATTACTTATATAAGATAGCAGTCGCGGTGATGCT
ATTGGATGGCGGCGAACAGGTACCTGGAGCACCTCCGAAAGCGCGCGGCG
GGAGAAATAATGACAACGGCTGCGTGGCTGCGAGACTTCGTCACGACTCA
TCCGGCCTACAAGCACGACTCGGTCATATCGGACGAAATCGCGTACGACC
TTGTCGTGGCCTGCCAGGAGATTGGCTTGGTAAGATTTTTTACAGCCTTT
CACAAAGCAGCACCGATGTTGTTGCACTAGCGCTTCAAAACAATACCTTC
CCCATGAAGCACGCCTTGAAAGTGCAGAAGATAGAACAACCTATTCAATT
TCCTGCCCGAGTCCTTTAGCTGCGAGTATTTCGTATAAGGAGTGGTAGTT
ACTCTTAGTCGTGACGAGGGTCGATGAAACGCCACTTTCAATTGCTTTGT
TAGCTTTTCGCCAGCTCCGTATAAAACCAGCACTAATATCTTCGTCAGTG
GAAGACCGATGCTGCCATGGGAGAGTTGATTGATTGATTGATTATCACAC
TTACAACCGACACGCCCATTAATCAGTCGCCAATCCTGCTCGTGGTCAGA
TAAGAAACGCAACAAAGATCGAAACCCAACATAATATTTATAATAGTACA
TACACACCGGTAAGACAAAATGCAAAACCACACCTAGATTTAGAGTAGAA
TAGAGAAATACCGCAGCACGTGGGTCTGCTGGAGGCCACCTCTCCTTCAG
TAAGGGCAACTAACTCAGACACCCCACCTCGATGTTTTAGCTCTGGTATC
CTCTACTTAGTTTCCACACAAAGCACCAAAAAAGAGACACAAACAAAATT
AAGAAGCACAGACTATTGTGACTATTTTTTTTTTTTTAAACGAACAGCGA
AAAAAAGTATATAGGGTGAGCACATTGAATATTGGTTCAGATATTTCTGA
CACGCGCATCAAGATCTGAAAGCATTCCTATTGCATTTTCGATCTGCCGG
GACTGCAGGGAAAGCGCGCCTGTCCCGACCTCCTCGGGAACATTGTCATC
CCCGAAGTGACGCAGGAGGAGGCTTGGGATGTGGTACTAGACTCGAGCAA
GATAGAGATCCAGGCCCGGAATCAACTTATCAAGAAGTGCGTCTATCGGT
AAAAAAATACGAGGGGACATGAACACGAGGCGTCATTGTTTTCCTCAGTA
AGGGAGGGACATATCTGTATGCACGTTCTTATTGTCTCTTTTAAATGAAT
TATCAGAAAGCAGCGTAGTGGCTCGAGGGTGCGATATATTCAAACGCTCG
TGTCCACGGATATCTTGGAACCTTTAAAGCGGTAGGTTGATGTTTCTGAA
GGGAAATGAAATATAGTTTTTATTAAAAGAACCTTGAACTCATTAGAACC
CTTCGAACATCCACGCCTTCTTAGCACCATGAGAGGTGCAGTCCAGGGGA
CCAACTGGTTCTAATGTGGACATTACTACCCCAATGAAATATAGTTTATT
GGATTCCAACCAATCGTAGGAACCTCTGCTTCAGCTGATACTGATACCGA
CCTTTGGTCTTGATGTCTCAATGGTGTGCAGGTTTGTCAAGAAAGCGGCC
GAGAAGCGAAACTTGCGCGAGAAGGAAGAGTATAGCGTGTGTGGAAGAAA
CAAATGAAACAAACTTCTGATGCCATAGTCGGTGGCGGGGTGAACAGGGC
AGAAGAGGATGGGCCAGCGCCCTCCGGCTCACCTTCGGTGATAACTACCG
GCGATGGCGGTAGCGGTGTCAATGCAGTAGTATCGGTTGATATCGTCGGC
CGATCGATGATGGTAGTAGCTTCGCATCAAAGCAGAACGAGAGCGGGAGT
TCGTTCCGAACAATCCCGGAATGTCTACTATGATATATTTACAAGAGATC
CATGCAAATGTTTTATGCAAATATTAATAGCAGTTTTTTGTAAGGGGGGG
TGATGATCGGCTTGTTATTCCCCTGCTTTAGGAAATGACCTAAGAGTAGA
ACGTTATGACGATTGGTTCCTTATGCCCCCGCTTTAGGAAATCACTAAGA
GTAGAACGTTATGACGATTGGTTCCTTATTCCCCCGCTTTAGGAAATGAC
TTAAGAAGTAGAACGTTATGATGATTGGTTCCTTATTCCCCCACCTTAGG
CAATGACCTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig6126:6477..9589+

>mRNA_H-elongata_contig6126.13674.1 ID=mRNA_H-elongata_contig6126.13674.1|Name=mRNA_H-elongata_contig6126.13674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig6126:6477..9589+ (Himanthalia elongata Himel1 dioecious)
ATGACACTAAGTGAAATCATGGAGGGCAAGATGACACTAAGTGAAATCAT
GGAGGGCAAGGGAAATTTCCCTGGGCTGGTTCCCCTGGTGAACGCCTACA
TGGAGTACATCAACGCCGATCTCTCCACGATCGATATAGTAGAGAAGGAA
ATTTCCCTGGGCTGGTTCCCCTGGTGAACGCCTACATGGAGTACATCAAC
GCCGATCTCTCCACGATCGATATAGTAGAGAAGTACCTGGAGCACCTCCG
AAAGCGCGCGGCGGGAGAAATAATGACAACGGCTGCGTGGCTGCGAGACT
TCGTCACGACTCATCCGGCCTACAAGCACGACTCGGTCATATCGGACGAA
ATCGCGTACGACCTTGTCGTGGCCTGCCAGGAGATTGGCTTGGTACCTGG
AGCACCTCCGAAAGCGCGCGGCGGGAGAAATAATGACAACGGCTGCGTGG
CTGCGAGACTTCGTCACGACTCATCCGGCCTACAAGCACGACTCGGTCAT
ATCGGACGAAATCGCGTACGACCTTGTCGTGGCCTGCCAGGAGATTGGCT
TGGGAAAGCGCGCCTGTCCCGACCTCCTCGGGAACATTGTCATCCCCGAA
GTGACGCAGGAGGAGGCTTGGGATGTGGTACTAGACTCGAGCAAGATAGA
GATCCAGGCCCGGAATCAACTTATCAAGAAGGAAAGCGCGCCTGTCCCGA
CCTCCTCGGGAACATTGTCATCCCCGAAGTGACGCAGGAGGAGGCTTGGG
ATGTGGTACTAGACTCGAGCAAGATAGAGATCCAGGCCCGGAATCAACTT
ATCAAGAAGTTTGTCAAGAAAGCGGCCGAGAAGCGAAACTTGCGCGAGAA
GGAAGAGTATAGCGTGTGTGGAAGAAACAAATGAGTTTGTCAAGAAAGCG
GCCGAGAAGCGAAACTTGCGCGAGAAGGAAGAGTATAGCGTGTGTGGAAG
AAACAAATGA
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