mRNA_H-elongata_contig6126.13673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6126.13673.1
Unique NamemRNA_H-elongata_contig6126.13673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: D7FP20_ECTSI (Glutamate--cysteine ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP20_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.490e-15
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQTVRWKPPPPR++PNDPH+GWRTEFRSLEIQL   E
Sbjct:  453 TNWQTVRWKPPPPRLSPNDPHVGWRTEFRSLEIQLTDFE 491
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A7S2KFJ0_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFJ0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.520e-15
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQ+VRWKPPPPR  PNDPHIGWRTEFRS+E+QL   E
Sbjct:   43 TNWQSVRWKPPPPRHTPNDPHIGWRTEFRSMEMQLTDFE 81
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A7S2WRG5_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WRG5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.170e-15
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVERCQTHLGTSELT 159
            +NWQTVRWKPPPPR +PNDPHIGWRTEFRS+EIQL   E     + T  LT
Sbjct:  222 TNWQTVRWKPPPPRNSPNDPHIGWRTEFRSMEIQLTDFENAAFTIFTVLLT 272
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: B8LE49_THAPS (Glutamate--cysteine ligase (Fragment) n=2 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LE49_THAPS)

HSP 1 Score: 79.0 bits (193), Expect = 8.770e-15
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVERCQTHLGTSELT 159
            +NWQTVRWKPPPPR  PNDPHIGWRTEFRS+EIQL   E       T+ LT
Sbjct:  422 TNWQTVRWKPPPPRSGPNDPHIGWRTEFRSMEIQLTDFENAAFTTFTTLLT 472
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A835ZCQ8_9STRA (Glutamate--cysteine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.840e-15
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQTVRWKPPPPR +PNDPHIGWRTEFRSLE+QL   E
Sbjct:  452 TNWQTVRWKPPPPRTSPNDPHIGWRTEFRSLEVQLTDFE 490
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A7S2YK69_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YK69_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 9.260e-15
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQTVRWKPPPPR +PNDPHIGWRTEFRS+EIQL   E
Sbjct:   77 TNWQTVRWKPPPPRNDPNDPHIGWRTEFRSMEIQLTDYE 115
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A1Z5KPV7_FISSO (Glutamate--cysteine ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPV7_FISSO)

HSP 1 Score: 77.0 bits (188), Expect = 4.260e-14
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQTVRWKPPPPR +PNDPHIGWRTEFRS+E+QL   E
Sbjct:  630 TNWQTVRWKPPPPRNSPNDPHIGWRTEFRSMELQLTDFE 668
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: A0A7S1ZWD3_TRICV (Glutamate--cysteine ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWD3_TRICV)

HSP 1 Score: 76.6 bits (187), Expect = 5.820e-14
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVERCQTHLGTSELT 159
            +NWQ+VRWKPPPPR +PNDPH+GWRTEFRS+EIQL   E     + T  LT
Sbjct:  658 TNWQSVRWKPPPPRNDPNDPHVGWRTEFRSMEIQLTDFENAAFTVFTVLLT 708
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: K0RUT7_THAOC (Glutamate--cysteine ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUT7_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 7.980e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQ+VRWKPPPPR  PNDPHIGWRTEFRS+EIQL   E
Sbjct:  722 TNWQSVRWKPPPPRSGPNDPHIGWRTEFRSMEIQLTDFE 760
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BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Match: B7FYG6_PHATC (Glutamate--cysteine ligase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYG6_PHATC)

HSP 1 Score: 75.5 bits (184), Expect = 1.450e-13
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    7 SNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVE 123
            +NWQ+VRWKPPPPR +PNDPHIGWRTEFRS+E+QL   E
Sbjct:  480 TNWQSVRWKPPPPRNSPNDPHIGWRTEFRSMELQLTDFE 518
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6126.13673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP20_ECTSI3.490e-1582.05Glutamate--cysteine ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2KFJ0_9STRA5.520e-1576.92Glutamate--cysteine ligase (Fragment) n=1 Tax=Lept... [more]
A0A7S2WRG5_9STRA7.170e-1568.63Glutamate--cysteine ligase (Fragment) n=1 Tax=Euca... [more]
B8LE49_THAPS8.770e-1568.63Glutamate--cysteine ligase (Fragment) n=2 Tax=Thal... [more]
A0A835ZCQ8_9STRA8.840e-1582.05Glutamate--cysteine ligase n=1 Tax=Tribonema minus... [more]
A0A7S2YK69_9STRA9.260e-1582.05Glutamate--cysteine ligase (Fragment) n=1 Tax=Amph... [more]
A0A1Z5KPV7_FISSO4.260e-1479.49Glutamate--cysteine ligase n=2 Tax=Fistulifera sol... [more]
A0A7S1ZWD3_TRICV5.820e-1464.71Glutamate--cysteine ligase n=1 Tax=Trieres chinens... [more]
K0RUT7_THAOC7.980e-1479.49Glutamate--cysteine ligase n=1 Tax=Thalassiosira o... [more]
B7FYG6_PHATC1.450e-1376.92Glutamate--cysteine ligase n=3 Tax=Phaeodactylum t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6126contigH-elongata_contig6126:5124..5465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.6e-13
Seed eggNOG ortholog35128.Thaps13064
Preferred nameGCLC
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
GOsGO:0000096,GO:0000166,GO:0000287,GO:0000302,GO:0000303,GO:0000305,GO:0000902,GO:0000904,GO:0001101,GO:0001678,GO:0002009,GO:0002165,GO:0003008,GO:0003013,GO:0003018,GO:0003254,GO:0003674,GO:0003824,GO:0004357,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006082,GO:0006355,GO:0006518,GO:0006520,GO:0006534,GO:0006536,GO:0006575,GO:0006732,GO:0006749,GO:0006750,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006915,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007584,GO:0008015,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009064,GO:0009069,GO:0009266,GO:0009408,GO:0009410,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0012501,GO:0014070,GO:0014823,GO:0015711,GO:0015833,GO:0016043,GO:0016595,GO:0016597,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0017109,GO:0019184,GO:0019219,GO:0019222,GO:0019725,GO:0019748,GO:0019752,GO:0019852,GO:0022008,GO:0023051,GO:0023057,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030435,GO:0030554,GO:0030587,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031406,GO:0031667,GO:0032268,GO:0032269,GO:0032270,GO:0032354,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032990,GO:0032991,GO:0033500,GO:0034097,GO:0034284,GO:0034635,GO:0034641,GO:0034698,GO:0035107,GO:0035114,GO:0035120,GO:0035150,GO:0035220,GO:0035239,GO:0035295,GO:0035690,GO:0035728,GO:0035729,GO:0036094,GO:0042176,GO:0042221,GO:0042391,GO:0042398,GO:0042493,GO:0042542,GO:0042592,GO:0042593,GO:0042886,GO:0042939,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043436,GO:0043523,GO:0043524,GO:0043531,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044344,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0044752,GO:0045454,GO:0045732,GO:0045862,GO:0045892,GO:0045934,GO:0046677,GO:0046685,GO:0046686,GO:0046688,GO:0046872,GO:0046937,GO:0046938,GO:0046982,GO:0046983,GO:0048037,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050801,GO:0050865,GO:0050866,GO:0050880,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051409,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0051881,GO:0051900,GO:0055082,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0061136,GO:0061564,GO:0061687,GO:0065007,GO:0065008,GO:0070555,GO:0070848,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071241,GO:0071248,GO:0071260,GO:0071276,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071363,GO:0071371,GO:0071372,GO:0071375,GO:0071407,GO:0071417,GO:0071495,GO:0071496,GO:0071585,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071840,GO:0072337,GO:0072348,GO:0080090,GO:0090066,GO:0090702,GO:0097066,GO:0097067,GO:0097068,GO:0097069,GO:0097159,GO:0097237,GO:0097367,GO:0097501,GO:0098754,GO:0098849,GO:0099120,GO:0104004,GO:0120036,GO:0120039,GO:1901214,GO:1901215,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901800,GO:1902494,GO:1902679,GO:1903050,GO:1903052,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1904386,GO:1904387,GO:1990170,GO:1990748,GO:2000058,GO:2000060,GO:2000112,GO:2000113,GO:2000489,GO:2000490,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.Glutamate-cysteine ligase
EggNOG OGs2XBFY@2836,KOG3754@1,KOG3754@2759
EC6.3.2.2
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.4054072-CDS-H-elongata_contig6126:5123..54651622930988.4054072-CDS-H-elongata_contig6126:5123..5465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 5124..5465 +
1691679652.3283813-CDS-H-elongata_contig6126:5123..54651691679652.3283813-CDS-H-elongata_contig6126:5123..5465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6126 5124..5465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6126.13673.1prot_H-elongata_contig6126.13673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6126 5124..5465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6126.13673.1

>prot_H-elongata_contig6126.13673.1 ID=prot_H-elongata_contig6126.13673.1|Name=mRNA_H-elongata_contig6126.13673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LLSNWQTVRWKPPPPRINPNDPHIGWRTEFRSLEIQLVRVERCQTHLGTS
ELTLSCVVNMSPAKTRIISHANTMKRVAGFPEPRSNLSLIGRMARYSLVY
ARTAEGCKAKIHR*
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mRNA from alignment at H-elongata_contig6126:5124..5465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6126.13673.1 ID=mRNA_H-elongata_contig6126.13673.1|Name=mRNA_H-elongata_contig6126.13673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig6126:5124..5465+ (Himanthalia elongata Himel1 dioecious)
CTGTTGTCCAACTGGCAAACCGTGCGCTGGAAGCCGCCACCTCCTAGGAT
CAACCCGAACGATCCCCACATAGGCTGGAGGACGGAATTCCGGAGTCTGG
AGATACAGCTGGTAAGGGTTGAACGTTGCCAAACCCACTTGGGTACGAGC
GAGCTCACGTTATCTTGCGTTGTCAATATGTCCCCTGCTAAAACTCGCAT
CATATCTCATGCGAATACCATGAAACGCGTGGCTGGTTTTCCGGAGCCTC
GGTCCAACCTCAGCCTTATTGGCCGGATGGCACGATATTCGTTGGTATAT
GCAAGGACGGCAGAAGGGTGTAAAGCCAAAATACACAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig6126:5124..5465+

>mRNA_H-elongata_contig6126.13673.1 ID=mRNA_H-elongata_contig6126.13673.1|Name=mRNA_H-elongata_contig6126.13673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig6126:5124..5465+ (Himanthalia elongata Himel1 dioecious)
CTGTTGTCCAACTGGCAAACCGTGCGCTGGAAGCCGCCACCTCCTAGGAT
CAACCCGAACGATCCCCACATAGGCTGGAGGACGGAATTCCGGAGTCTGG
AGATACAGCTGGTAAGGGTTGAACGTTGCCAAACCCACTTGGGTACGAGC
GAGCTCACGTTATCTTGCGTTGTCAATATGTCCCCTGCTAAAACTCGCAT
CATATCTCATGCGAATACCATGAAACGCGTGGCTGGTTTTCCGGAGCCTC
GGTCCAACCTCAGCCTTATTGGCCGGATGGCACGATATTCGTTGGTATAT
GCAAGGACGGCAGAAGGGTGTAAAGCCAAAATACACAGGTAACTGTTGTC
CAACTGGCAAACCGTGCGCTGGAAGCCGCCACCTCCTAGGATCAACCCGA
ACGATCCCCACATAGGCTGGAGGACGGAATTCCGGAGTCTGGAGATACAG
CTGGTAAGGGTTGAACGTTGCCAAACCCACTTGGGTACGAGCGAGCTCAC
GTTATCTTGCGTTGTCAATATGTCCCCTGCTAAAACTCGCATCATATCTC
ATGCGAATACCATGAAACGCGTGGCTGGTTTTCCGGAGCCTCGGTCCAAC
CTCAGCCTTATTGGCCGGATGGCACGATATTCGTTGGTATATGCAAGGAC
GGCAGAAGGGTGTAAAGCCAAAATACACAGGTAA
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