mRNA_H-elongata_contig61241.13671.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61241.13671.1
Unique NamemRNA_H-elongata_contig61241.13671.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61241.13671.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 8.230e-63
Identity = 122/347 (35.16%), Postives = 173/347 (49.86%), Query Frame = 1 
Query:   25 ECPLNCEDLFGRLENGTDHRKTQSIRLQVRGEPKSGTGMIQEWSWGALAHVCLYLQRLYGRESCRILWRN---------ERDNTDHFRMKTHSIVFEPEL------AANDTEKPCTCTSVKTVDIQFSAGRKHMLPVDSKCRWFHPRGITKKSFPPCEPPDGEPVENHAQLWSCMQESMCNITDHSLQIAVLRDPRAVTVSSYFQLVRQKSPMLVTEEVGSVDEFFAKHLDPITQWISLRYLLFTNIVLKMSEVFWYEDAVADPIEWHGRYYDFAGLQPPSQIIHHAAEIATQGGSILGFPAKGLDYHPNGKEQAPTRTFIDELNVESLNMMDDVLRKWLPPIVLRR 1020
            ECP  CE +FG+L     H     + LQ+RGEPKSGT  + EW+  AL   C  L RLYG  +C   WR              T    MK    VF+P        A   +  PC C++V  V I  S+  KH LPV   C W H   +T ++   C   +G  V N+     C+Q+  C I D  +Q+ +LRDPRAV VSS+F L     P        SVD F  + L  I  +I LRYL+    +   +  F Y++++ADP++WH R+    GL PP  ++  A   + +     GF  KG+D HP GKE    RT+ DE++ +    ++ + R+WLPP++L +
Sbjct:   82 ECPP-CETMFGKLNGAQQH-----VELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKG-CTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLR--REYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEK 419
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BLAST of mRNA_H-elongata_contig61241.13671.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.960e-41
Identity = 89/233 (38.20%), Postives = 124/233 (53.22%), Query Frame = 1 
Query:  337 VKTVDIQFSAGRKHMLPVDSKCRWFHPRGITKKSFPPCEPPDGEPVENHAQLWSCMQESMCNITDHSLQIAVLRDPRAVTVSSYFQLVRQKSPMLVTEEVGSVDEFFAKHLDPITQWISLRYLLFTNIVLKMSEVFWYEDAVADPIEWHGRYYDFAGLQPPSQIIHHAAEIATQGGSILGFPA-----KGLDYHPNGKEQAPTRTFIDELNVESLNMMDDVLRKWLPPIVLRR 1020
            ++ V+I  S   KH LPV+  C W H  G   +    C   DG PVE  A LW+CMQ++ C ITD+ LQ   +RDPRAV VS+YF  V + +         S+D+   + L  +  + +LR++LF  ++   +E+FWYE  V DP +WH R+  FAGL  P             GG I G  A     K L+ HP G E +  RT+ DE++      MD +LRKWLP ++L R
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDG-CWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHP--SLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILP-------------GGWIDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLAR 218
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BLAST of mRNA_H-elongata_contig61241.13671.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.880e-26
Identity = 64/170 (37.65%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:  523 ITDHSLQIAVLRDPRAVTVSSYFQLVRQKSPMLVTEEVG---SVDEFFAKHLDPITQWISLRYLLFTNIVLKMSEVFWYEDAVADPIEWHGRYYDFAGLQPPSQIIHHAAEIATQGGSILGFPAKGLDYHPNGKEQAPTRTFIDELNVESLNMMDDVLRKWLPPIVLRRL 1023
            + D SLQ AVLRDPRAV VS+YF +  +  P   ++ V    S+DE     L  + Q+ ++R+LLF   +   SE+FWYEDA+ DP+ WH R+  FAG   P+  I        +    +       D HP G++ +  RT+ DE++      MD +LR WLP ++L RL
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYV--KSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVK-----RDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERL 187
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BLAST of mRNA_H-elongata_contig61241.13671.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 8.130e-21
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:  553 LRDPRAVTVSSYFQLVRQKSPMLVTEEVGSVDEFFAKHLDPITQWISLRYLLFTNIVLKMSEVFWYEDAVADPIEWHGRYYDFAGLQPPSQIIHHAAEIATQGGSILGFPAKGLDYHPNGKEQAPTRTFIDELNVESLNMMDDVLRKWLPPIVLRR 1020
            +RDPRAV VS+YF + R    +       S+DE     L  I Q+ ++R++LF   +   SE+FWYEDA+ DP+ W+ R+   AG   P++ I       T+         +  + HP G+  +  RT+ DE++ E+   M+ +LR WLP ++L R
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAEN----DRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLAR 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61241.13671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJE4_ECTSI8.230e-6335.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE1.960e-4138.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE5.880e-2637.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI8.130e-2133.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61241contigH-elongata_contig61241:1347..3550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1038
Cds size1038
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61241.13671.1prot_H-elongata_contig61241.13671.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61241 1347..3550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930988.0323617-CDS-H-elongata_contig61241:1346..20401622930988.0323617-CDS-H-elongata_contig61241:1346..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 1347..2040 -
1691679652.1617746-CDS-H-elongata_contig61241:1346..20401691679652.1617746-CDS-H-elongata_contig61241:1346..2040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 1347..2040 -
1622930988.0513349-CDS-H-elongata_contig61241:2543..27511622930988.0513349-CDS-H-elongata_contig61241:2543..2751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 2544..2751 -
1691679652.1716926-CDS-H-elongata_contig61241:2543..27511691679652.1716926-CDS-H-elongata_contig61241:2543..2751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 2544..2751 -
1622930988.089172-CDS-H-elongata_contig61241:3414..35501622930988.089172-CDS-H-elongata_contig61241:3414..3550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 3415..3550 -
1691679652.1798146-CDS-H-elongata_contig61241:3414..35501691679652.1798146-CDS-H-elongata_contig61241:3414..3550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61241 3415..3550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61241.13671.1

>prot_H-elongata_contig61241.13671.1 ID=prot_H-elongata_contig61241.13671.1|Name=mRNA_H-elongata_contig61241.13671.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp
PAEVFPDIECPLNCEDLFGRLENGTDHRKTQSIRLQVRGEPKSGTGMIQE
WSWGALAHVCLYLQRLYGRESCRILWRNERDNTDHFRMKTHSIVFEPELA
ANDTEKPCTCTSVKTVDIQFSAGRKHMLPVDSKCRWFHPRGITKKSFPPC
EPPDGEPVENHAQLWSCMQESMCNITDHSLQIAVLRDPRAVTVSSYFQLV
RQKSPMLVTEEVGSVDEFFAKHLDPITQWISLRYLLFTNIVLKMSEVFWY
EDAVADPIEWHGRYYDFAGLQPPSQIIHHAAEIATQGGSILGFPAKGLDY
HPNGKEQAPTRTFIDELNVESLNMMDDVLRKWLPPIVLRRLRLDD*
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mRNA from alignment at H-elongata_contig61241:1347..3550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61241.13671.1 ID=mRNA_H-elongata_contig61241.13671.1|Name=mRNA_H-elongata_contig61241.13671.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2204bp|location=Sequence derived from alignment at H-elongata_contig61241:1347..3550- (Himanthalia elongata Himel1 dioecious)
CCCGCCGAGGTTTTCCCTGACATTGAATGCCCACTAAACTGCGAGGACTT
GTTCGGCAGACTCGAGAACGGGACAGATCACAGGAAAACGCAGTCCATAA
GGCTGCAGGTTCGAGGAGAGCCCAAAAGTGGCACAGGTGCGTCGCGTGTG
ATTTTGAACCGTAGAGTATGAATTTTATATTTTGATTGTTTTCTGGGACA
TTGAAAACCGCAGGAGTTTTTCAAGACAACTTGGCCGTAGACTGACGCTT
GCCCTTGGGGGCTTAAAAGGTAGTTATTTCTACTGCATTAATTGAGGCCA
AAGATACATTTTGTTAAAGCAAAAAACTTAATAATGTAGATATCCTTGCC
GCATCCGCGTAGCTCCCGGCGCATGATATTATCTTAGAAATAAAAAACAA
CCTTGAAACAATTAGCTGTCCTAAAATATCTTTATTTTATTTGCTGACGG
TCCGAGGTGTCGCATCAAGGATAACCATTCTTTACGATTACGAGGATGGA
CTTTCTGCCACAAGAGCAGCTCTCTTCATGTAGTTTGCGGAGTACTTGTT
TCAAAATATATCGTCAACCTACCAACAACGCACCTCCACCGTTTCGACTG
ATTTACTGTAATTCCAAATAGATATATTTAAGATTTAACGCTGAAGGTGA
CTGATTTCGTCGCAACCCCTAACCCCATTCACGGCTTGATGCATCTTATT
TGTCTTTTCCTCTGACGGGTTTGCTGCACACGGCCCACGTCCGCTTCCCG
ATATCAACATAAACCACTTAGATTCATGCTGCTACGCTTATTATGTTAGG
AATGATACAGGAATGGAGCTGGGGAGCGCTAGCTCATGTTTGTCTCTACC
TGCAGCGTCTGTATGGCCGGGAAAGCTGCCGAATCCTGTGGAGGAACGAG
AGAGACAATACGGACCATTTTCGTATGAAGACACACTCAATCGTTTTCGA
GCCAGAATTAGCAGCCAACGACACAGAAAAGCCCTGTACCTGTACAAGCG
TTAAGACGTGAGAGCGAACAAAAAATGTTATGCTTTTTAAACTTGTGCAT
TCGAGGAAAGTTAGCGATGTTCGTAGATAAAACAGGTCGCACCACTAGAT
CAGGCCCTTTTGAAGTTGAGAATTTGGCAGCTGGACGTTCTAACCTGCTA
AATTTGTTGCCTCCACACGAACTGCTTGCGACGTCATCCGACAACTCAGT
GTTAAAGCATATACATGTACATAATTTGCACACCTTGCGTGCGTAGGTGC
ACCATACGTTAAAAGAGGTTCAAGGGTACGTTTTGCTCCCAACCACAAGG
CTGCCGTTCCGGCTGATGCTTCGAGTAATGCCGCGCGGCAATTTAGGCAC
GAGAGAGGCTTTACCGCATATTTTCCTGGCTGAAGTGACTACGCCGCGCG
CGTGAACCCTTCCTTGTCAATCGACGTATCAAATAATGTTTTTGCCGATG
TTTGATTCCCGCTACCTTGTCCCCCATCGCACCGTGGCTGGGCGTAACCT
TCACTTGCAGAGTGGACATTCAATTTTCAGCTGGACGCAAGCATATGTTG
CCTGTGGATTCGAAGTGCCGCTGGTTTCACCCGCGCGGTATCACCAAAAA
GAGCTTCCCGCCGTGTGAGCCACCGGATGGTGAACCAGTGGAAAACCATG
CTCAATTGTGGTCGTGTATGCAAGAGTCTATGTGTAACATCACCGACCAC
AGCCTCCAGATAGCGGTGCTCCGCGATCCGCGCGCCGTGACAGTTAGCTC
CTACTTTCAACTCGTCCGGCAGAAATCGCCAATGTTGGTCACAGAAGAAG
TTGGATCTGTCGATGAGTTTTTTGCTAAACATCTAGACCCCATTACCCAG
TGGATCAGCCTCCGCTACCTGCTCTTCACCAACATCGTGTTGAAGATGTC
CGAGGTGTTTTGGTACGAGGACGCAGTCGCTGATCCGATCGAGTGGCACG
GTCGTTACTATGATTTTGCCGGCCTCCAACCGCCTTCTCAGATAATACAC
CACGCCGCAGAAATTGCTACCCAGGGTGGGAGCATCCTCGGCTTTCCAGC
AAAGGGTCTCGATTATCACCCCAATGGCAAGGAGCAAGCGCCTACTAGAA
CATTCATCGATGAACTAAACGTTGAATCACTTAATATGATGGACGATGTG
CTGCGCAAATGGCTCCCGCCTATCGTTCTCAGACGATTGCGGCTGGACGA
TTAG
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Coding sequence (CDS) from alignment at H-elongata_contig61241:1347..3550-

>mRNA_H-elongata_contig61241.13671.1 ID=mRNA_H-elongata_contig61241.13671.1|Name=mRNA_H-elongata_contig61241.13671.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at H-elongata_contig61241:1347..3550- (Himanthalia elongata Himel1 dioecious)
CCCGCCGAGGTTTTCCCTGACATTGAATGCCCACTAAACTGCGAGGACTT
GTTCGGCAGACTCGAGAACGGGACAGATCACAGGAAAACGCAGTCCATAA
GGCTGCAGGTTCGAGGAGAGCCCAAAAGTGGCACAGCCCGCCGAGGTTTT
CCCTGACATTGAATGCCCACTAAACTGCGAGGACTTGTTCGGCAGACTCG
AGAACGGGACAGATCACAGGAAAACGCAGTCCATAAGGCTGCAGGTTCGA
GGAGAGCCCAAAAGTGGCACAGGAATGATACAGGAATGGAGCTGGGGAGC
GCTAGCTCATGTTTGTCTCTACCTGCAGCGTCTGTATGGCCGGGAAAGCT
GCCGAATCCTGTGGAGGAACGAGAGAGACAATACGGACCATTTTCGTATG
AAGACACACTCAATCGTTTTCGAGCCAGAATTAGCAGCCAACGACACAGA
AAAGCCCTGTACCTGTACAAGCGTTAAGACGAATGATACAGGAATGGAGC
TGGGGAGCGCTAGCTCATGTTTGTCTCTACCTGCAGCGTCTGTATGGCCG
GGAAAGCTGCCGAATCCTGTGGAGGAACGAGAGAGACAATACGGACCATT
TTCGTATGAAGACACACTCAATCGTTTTCGAGCCAGAATTAGCAGCCAAC
GACACAGAAAAGCCCTGTACCTGTACAAGCGTTAAGACAGTGGACATTCA
ATTTTCAGCTGGACGCAAGCATATGTTGCCTGTGGATTCGAAGTGCCGCT
GGTTTCACCCGCGCGGTATCACCAAAAAGAGCTTCCCGCCGTGTGAGCCA
CCGGATGGTGAACCAGTGGAAAACCATGCTCAATTGTGGTCGTGTATGCA
AGAGTCTATGTGTAACATCACCGACCACAGCCTCCAGATAGCGGTGCTCC
GCGATCCGCGCGCCGTGACAGTTAGCTCCTACTTTCAACTCGTCCGGCAG
AAATCGCCAATGTTGGTCACAGAAGAAGTTGGATCTGTCGATGAGTTTTT
TGCTAAACATCTAGACCCCATTACCCAGTGGATCAGCCTCCGCTACCTGC
TCTTCACCAACATCGTGTTGAAGATGTCCGAGGTGTTTTGGTACGAGGAC
GCAGTCGCTGATCCGATCGAGTGGCACGGTCGTTACTATGATTTTGCCGG
CCTCCAACCGCCTTCTCAGATAATACACCACGCCGCAGAAATTGCTACCC
AGGGTGGGAGCATCCTCGGCTTTCCAGCAAAGGGTCTCGATTATCACCCC
AATGGCAAGGAGCAAGCGCCTACTAGAACATTCATCGATGAACTAAACGT
TGAATCACTTAATATGATGGACGATGTGCTGCGCAAATGGCTCCCGCCTA
TCGTTCTCAGACGATTGCGGCTGGACGATTAGAGTGGACATTCAATTTTC
AGCTGGACGCAAGCATATGTTGCCTGTGGATTCGAAGTGCCGCTGGTTTC
ACCCGCGCGGTATCACCAAAAAGAGCTTCCCGCCGTGTGAGCCACCGGAT
GGTGAACCAGTGGAAAACCATGCTCAATTGTGGTCGTGTATGCAAGAGTC
TATGTGTAACATCACCGACCACAGCCTCCAGATAGCGGTGCTCCGCGATC
CGCGCGCCGTGACAGTTAGCTCCTACTTTCAACTCGTCCGGCAGAAATCG
CCAATGTTGGTCACAGAAGAAGTTGGATCTGTCGATGAGTTTTTTGCTAA
ACATCTAGACCCCATTACCCAGTGGATCAGCCTCCGCTACCTGCTCTTCA
CCAACATCGTGTTGAAGATGTCCGAGGTGTTTTGGTACGAGGACGCAGTC
GCTGATCCGATCGAGTGGCACGGTCGTTACTATGATTTTGCCGGCCTCCA
ACCGCCTTCTCAGATAATACACCACGCCGCAGAAATTGCTACCCAGGGTG
GGAGCATCCTCGGCTTTCCAGCAAAGGGTCTCGATTATCACCCCAATGGC
AAGGAGCAAGCGCCTACTAGAACATTCATCGATGAACTAAACGTTGAATC
ACTTAATATGATGGACGATGTGCTGCGCAAATGGCTCCCGCCTATCGTTC
TCAGACGATTGCGGCTGGACGATTAG
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