mRNA_H-elongata_contig61239.13670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61239.13670.1
Unique NamemRNA_H-elongata_contig61239.13670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A6H5K5N4_9PHAE (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N4_9PHAE)

HSP 1 Score: 312 bits (800), Expect = 1.460e-103
Identity = 155/191 (81.15%), Postives = 172/191 (90.05%), Query Frame = 1
Query:   16 KSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            K+  D TVAVAGSTGYIGKFVALECVRRGY+TIALTRN  AV+EGAEMV+ DVTDP+S+ AAL GR +D ++SCLASRSGTKSDSFAIDYQATLNCL+ AK EGA HFV+LSAFCVKKP LQFQKAKL+FE +L++AG AGEIGYS+VRPTAFFKSVSGQLEVVQ GAPFVVFGDG MCKCNPIAEADL +
Sbjct:   53 KAAKDMTVAVAGSTGYIGKFVALECVRRGYKTIALTRNPDAVVEGAEMVLTDVTDPASVDAALAGRKIDALVSCLASRSGTKSDSFAIDYQATLNCLETAKKEGAAHFVMLSAFCVKKPILQFQKAKLKFEEKLVEAGNAGEIGYSIVRPTAFFKSVSGQLEVVQGGAPFVVFGDGTMCKCNPIAEADLAT 243          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A835ZBC9_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBC9_9STRA)

HSP 1 Score: 254 bits (650), Expect = 8.890e-82
Identity = 130/190 (68.42%), Postives = 151/190 (79.47%), Query Frame = 1
Query:   22 PTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEGAEMVVADVTDPSSIAA-ALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEA--GEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
            P DTTV VAG+TGYIGKFV  ECVR+GY+T+A+TRN  A  EGA  VVADVT+P  +   A +GR+VD +ISCLASRSGTKSDS+A+DYQAT NCL   +  G  HFVLLSA+CV+KP LQFQ AKL+FE EL+ A +A    + YS+VRPTAFFKSVSGQLEVV+ G PFVVFGDG MCKCNPIAE DL
Sbjct:    9 PADTTVLVAGATGYIGKFVVQECVRQGYKTLAVTRNPDAKFEGATTVVADVTNPDELQKLAFDGRSVDAVISCLASRSGTKSDSWAVDYQATANCLQAGQKAGIKHFVLLSAYCVRKPLLQFQLAKLQFEKELVAASKAETNPVNYSIVRPTAFFKSVSGQLEVVKGGFPFVVFGDGTMCKCNPIAEVDL 198          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7S3Y013_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y013_HETAK)

HSP 1 Score: 238 bits (606), Expect = 2.020e-74
Identity = 130/192 (67.71%), Postives = 148/192 (77.08%), Query Frame = 1
Query:   22 PTDTTVAVAGSTGYIGKFVALECVRRGYR-TIALTRNAGAVIE----GAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
            P D+TV V G+TGYIGKFV  ECVRRG++  IA+TR+     E    GA + VADVT+P SI  A EG  VD +ISCLASRSGTKSDSF IDYQATLN L+ A+   A HFVLLSAFCV+KPTLQFQ AKL+FE  L     A +I +S+VRPTAFFKSVSGQLEVVQ+GAPFV FGDG MCKCNPIAE+DL
Sbjct:   63 PKDSTVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSEPQGKEEYFNGANIKVADVTNPESIKTAFEGEQVDAVISCLASRSGTKSDSFLIDYQATLNSLEAARAAKAKHFVLLSAFCVRKPTLQFQLAKLQFEKAL---RSADDITHSIVRPTAFFKSVSGQLEVVQAGAPFVYFGDGTMCKCNPIAESDL 251          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7S4D9Q0_HETAK (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9Q0_HETAK)

HSP 1 Score: 216 bits (551), Expect = 1.070e-65
Identity = 115/194 (59.28%), Postives = 143/194 (73.71%), Query Frame = 1
Query:   22 PTDTTVAVAGSTGYIGKFVALECVRRGYR-TIALTRNA------GAVIEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADL 582
            P D++V V G+TGYIGKFV  ECVRRG++  IA+TR+           +GA++ +ADVT+P SI  A +   VD +ISCLASR GTK D++ IDYQATLN LD A+   + HFVLLSAFCV+KP LQ Q+AKL+FE  L     A +I +S+VRPTAFFKSVSGQ+E V+SG PFV FGDG+MCKCNPIAE +L
Sbjct:   67 PKDSSVLVVGATGYIGKFVVQECVRRGFKKVIAVTRSDPLGGKDAKFFDGADIKLADVTNPESIKTAFDEEQVDAVISCLASRWGTKDDAYRIDYQATLNTLDAAREANSKHFVLLSAFCVRKPLLQLQQAKLKFEAAL---QSADDITHSIVRPTAFFKSVSGQMEAVKSGTPFVYFGDGSMCKCNPIAETEL 257          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A448ZEL1_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEL1_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.940e-65
Identity = 114/202 (56.44%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   34 TVAVAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALE-----GRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            T  +AG+TGYIGK V  E VR+GY+TIAL R++            G   EGAE++  DV DP+++   +E     G +++ +ISCLASRSG K D++AIDYQAT NCLD     GA HFVLLSAFC K P LQFQ+AKL+FE +L+ A +  +I +++VRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADL +
Sbjct:   39 TAIIAGATGYIGKSVVRESVRQGYKTIALVRDSEKVNNKQGQALYGQFFEGAEVIECDVCDPAALTKTMEKIKADGGDIEAVISCLASRSGIKKDAYAIDYQATKNCLDSGIATGARHFVLLSAFCCKNPWLQFQQAKLKFEADLVAAQD--KITHTIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGKVTRCNPIAEADLAT 238          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A7R9ZKM2_9STRA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKM2_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.940e-64
Identity = 117/200 (58.50%), Postives = 142/200 (71.00%), Query Frame = 1
Query:   43 VAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALEG-----RNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGE-IGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            VAG+TGYIGK V  E VR+GY+TIAL R+             G   +GA++V  DV DP+ +  ALEG       ++ +ISCLASRSG K D++AIDYQAT NCLD      A HFVLLSAFCVK P LQFQ+AKL+FE++L    EA + + YS+VRPTAFFKSVSGQLEVVQ GAPFV+FGDG + +CNPIAEADL +
Sbjct:   37 VAGATGYIGKSVVRESVRQGYKTIALVRSKDKVESNKGKALYGQFFDGAQIVECDVCDPAQLTKALEGIKSESGKIESVISCLASRSGIKKDAYAIDYQATKNCLDAGMANDARHFVLLSAFCVKNPWLQFQQAKLKFESDL----EAQDKMTYSIVRPTAFFKSVSGQLEVVQQGAPFVMFGDGEVTRCNPIAEADLAT 232          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A9SY59_PHYPA (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SY59_PHYPA)

HSP 1 Score: 210 bits (535), Expect = 3.420e-63
Identity = 113/207 (54.59%), Postives = 140/207 (67.63%), Query Frame = 1
Query:   10 RGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV------------IEGAEMVVADVTDPSSIAAALEGRN--VDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            R K P DTTV + G+TGYIGKFV  E V RGY  IA+ R    +              G+ +V ADV+D  SI +AL+  N  VD +ISCLASR+G K DS+ IDYQAT N LD     GA+HFVLLSA CV+KP L+FQKAKL+FE+EL+  G    + YS+VRPTAFFKS+ GQ++ VQ G P+V+FGDG +C C PI+EADL S
Sbjct:   93 RSKEPKDTTVMIVGATGYIGKFVVREMVNRGYNVIAVAREKSGIGGKVDAEQTIRDFPGSTVVFADVSDTDSITSALQSPNINVDVVISCLASRTGGKKDSWKIDYQATRNSLDAGVARGASHFVLLSAICVQKPLLEFQKAKLKFEDELVNYGNG--LTYSIVRPTAFFKSLGGQVQSVQGGGPYVMFGDGKLCACKPISEADLAS 297          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: B8BXU7_THAPS (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU7_THAPS)

HSP 1 Score: 210 bits (535), Expect = 8.950e-63
Identity = 112/205 (54.63%), Postives = 140/205 (68.29%), Query Frame = 1
Query:   28 DTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNA------------GAVIEGAEMVVADVTDPSSIAAALE------GRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            D    +AG+TGYIGK    E VR+GY+T+AL R+             G   EGAE+V  DV D   +  AL+         +D ++SCLASRSG K D++AIDYQATLNCL+  +  GA HFVLLSAFCVK P LQFQ+AKL+FE+ L       ++ YS+VRPTAFFKSVSGQLEV+QSGAPFV+FGDG + +CNPI+EADL +
Sbjct:  132 DKVAVIAGATGYIGKSTVRESVRQGYKTVALVRDKKKVESDEGKMLYGQFFEGAELVECDVCDAEKLTEALKDISDQYNGKIDAVVSCLASRSGIKKDAYAIDYQATLNCLESGRAVGARHFVLLSAFCVKNPWLQFQQAKLKFESALT---AQSDMSYSIVRPTAFFKSVSGQLEVIQSGAPFVMFGDGEVTRCNPISEADLAT 333          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: A0A4V6MB86_9CHLO (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Chlamydomonas sp. UWO 241 TaxID=1653778 RepID=A0A4V6MB86_9CHLO)

HSP 1 Score: 208 bits (530), Expect = 2.110e-62
Identity = 110/205 (53.66%), Postives = 140/205 (68.29%), Query Frame = 1
Query:   10 RGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV------------IEGAEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS 588
            R K+P D  V V G TGYIGKFV  E ++RGY  +A +R    +              GA +   DV DP SI      + VD ++SCLASR+G K DS+AIDYQAT N LDVA+ +GA HFVLLSA CV+KPTL+FQKAKL+FE +L     AG+I YS+VRPTAFFKS++GQ+E+V+ G P+V+FGDGN+  C PI+EADL +
Sbjct:  101 RSKAPKDVRVLVVGPTGYIGKFVTNELIKRGYDVVAFSRPKAGIKGKMSKEDTTKEFPGATVCFGDVADPKSIRDVAFEKQVDVVVSCLASRTGGKKDSWAIDYQATKNVLDVAREKGAAHFVLLSAICVQKPTLEFQKAKLKFEGDL---AAAGDITYSIVRPTAFFKSLAGQIELVKQGKPYVMFGDGNLASCKPISEADLAN 302          
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Match: R1D7A7_EMIHU (Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D7A7_EMIHU)

HSP 1 Score: 203 bits (516), Expect = 1.180e-60
Identity = 122/208 (58.65%), Postives = 139/208 (66.83%), Query Frame = 1
Query:   13 GKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAV-----IEGAEMVVADVTDPSSIAAA---LEGRNVDGMISCLASRSGTKSDSFAIDYQATLNCLDVAKMEGANHFVLLSAFCVKKP------TLQFQKAKLRFENELIKAGEAGEIGYSVVRPTAFFKSVSGQLEVVQSGAPFVVF--GDGNMCKCNPIAEADLVS 588
            G+S T   V V G+TGYIGK V  E VRRGY T A+ R+A         EGA +  ADV DP ++ AA    E   VD +ISCLASRSG+K DSFAIDYQATLNCLD A+  GA HFVLLSAFCVK         LQFQ AK+ FE +L    E  E+ YS+VRPTAFFKSVSGQLEVV SGAPFV F  G+G    CNPI+EADL +
Sbjct:   44 GESCTGEKVVVVGATGYIGKAVVRESVRRGYATTAVVRDAAKAAGEPKFEGARIATADVCDPPALGAAGSPFEKGAVDVVISCLASRSGSKKDSFAIDYQATLNCLDAARAAGARHFVLLSAFCVKSAERKDPYALQFQYAKMEFEAKL---REQTEMTYSIVRPTAFFKSVSGQLEVVNSGAPFVYFDLGEGRCATCNPISEADLAA 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61239.13670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5N4_9PHAE1.460e-10381.15Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A835ZBC9_9STRA8.890e-8268.42Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7S3Y013_HETAK2.020e-7467.71Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7S4D9Q0_HETAK1.070e-6559.28Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A448ZEL1_9STRA3.940e-6556.44Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A7R9ZKM2_9STRA1.940e-6458.50Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A9SY59_PHYPA3.420e-6354.59Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
B8BXU7_THAPS8.950e-6354.63Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
A0A4V6MB86_9CHLO2.110e-6253.66Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]
R1D7A7_EMIHU1.180e-6058.65Divinyl chlorophyllide a 8-vinyl-reductase, chloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61239contigH-elongata_contig61239:717..3383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue7.3e-85
Seed eggNOG ortholog2880.D7FPA5
Preferred nameDVR
KEGG rclassRC01376
KEGG koko:K19073
KEGG ReactionR06272,R06896
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0015994,GO:0015995,GO:0016020,GO:0016491,GO:0018130,GO:0019438,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033013,GO:0033014,GO:0034641,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046483,GO:0051186,GO:0051188,GO:0051744,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
EC1.3.1.75
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description3,8-divinyl protochlorophyllide a 8-vinyl reductase, putative chloroplast precursor
Ec32 orthologEc-15_004140.1
Exons4
Model size588
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61239.13670.1prot_H-elongata_contig61239.13670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61239 717..3383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.8985178-CDS-H-elongata_contig61239:716..8031622930987.8985178-CDS-H-elongata_contig61239:716..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 717..803 -
1691679652.128485-CDS-H-elongata_contig61239:716..8031691679652.128485-CDS-H-elongata_contig61239:716..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 717..803 -
1622930987.936044-CDS-H-elongata_contig61239:1348..14681622930987.936044-CDS-H-elongata_contig61239:1348..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 1349..1468 -
1691679652.1383424-CDS-H-elongata_contig61239:1348..14681691679652.1383424-CDS-H-elongata_contig61239:1348..1468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 1349..1468 -
1622930987.9636912-CDS-H-elongata_contig61239:1656..18211622930987.9636912-CDS-H-elongata_contig61239:1656..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 1657..1821 -
1691679652.1460185-CDS-H-elongata_contig61239:1656..18211691679652.1460185-CDS-H-elongata_contig61239:1656..1821Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 1657..1821 -
1622930987.9806952-CDS-H-elongata_contig61239:3167..33831622930987.9806952-CDS-H-elongata_contig61239:3167..3383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 3168..3383 -
1691679652.1537821-CDS-H-elongata_contig61239:3167..33831691679652.1537821-CDS-H-elongata_contig61239:3167..3383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61239 3168..3383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61239.13670.1

>prot_H-elongata_contig61239.13670.1 ID=prot_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MTLRGKSPTDTTVAVAGSTGYIGKFVALECVRRGYRTIALTRNAGAVIEG
AEMVVADVTDPSSIAAALEGRNVDGMISCLASRSGTKSDSFAIDYQATLN
CLDVAKMEGANHFVLLSAFCVKKPTLQFQKAKLRFENELIKAGEAGEIGY
SVVRPTAFFKSVSGQLEVVQSGAPFVVFGDGNMCKCNPIAEADLVS
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mRNA from alignment at H-elongata_contig61239:717..3383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61239.13670.1 ID=mRNA_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2667bp|location=Sequence derived from alignment at H-elongata_contig61239:717..3383- (Himanthalia elongata Himel1 dioecious)
ATGACGCTGCGGGGCAAGTCGCCGACAGACACTACCGTGGCGGTGGCCGG GTCAACGGGTTATATCGGGAAGTTCGTCGCCTTGGAGTGCGTCCGACGCG GCTACAGGACCATAGCGCTTACGCGGAACGCCGGCGCGGTGATCGAGGGC GCGGAGATGGTCGTGGCGGACGTGACGGATCCGTCGAGTATCGCGGCCGC GCTAGAGGGTCGAAATGTGAGGCCTTGATCCCCCCCCCCCCCCCCCCCCC CCCCACCCCCTCAGAACTTTGGCGGGTTGTGTTTTTTTTGGTTTTTTNNN NNNNNNNAATGGGGGTGGCGGGCGGGAAGCGACGGCCGAGTGTCGCGGCC CCGGTGGGGGGTCCGAGTTTGGGGACTTTTGCCCCCCCCCCCCCCCCATC TCCCAATTCTCTACGAGTACTCGTGGTCGTTGTTTTTTGTTGGATTGTTT GGTCCTTTTTTTAGGTTTGGTTGTCTATGAATAACACGGTCTACGTCGGT TGGCTCTAAGCGATTGTTGGTTCACGACGACTAGAGAGGCGCTCCGACGA GTGCAGGAATACGCGCGGCTCCATCTCGTCAAACGAGTACTCCGCACCAC GTGTTTTTCCCAGTGTTTTTCTCCTCTGAGGCATGATCGTACGGACAATA TGTTGGGGGGAGGGGACAGTAGTCACACACACATACACAAATATATACAG TCACGTTTAACCAGATATTTTTGTAACAAATATGGTTGAATCCCCCATTG GGAGGATCAATGCGAGAGTAGCCTAGAAGAGCTAGCATGACATGGCCAGA TTGCGCGGTTGTTGTTGTTGTTGGTCACATATTTAGCAAAAGATCAACCG GATTTGGTTGCCTTCTGCTCGTGGTCAGCTGAACAGGGAAAATAATTTTT CTCCTGTCCCTATGTGCAGTTTAATAAATACACACACATTGGGAGGATGA ATGCGAGAGTACCCTAGAAGAGCTAGCATGACAGAGCCGGATTGCGTGGT TATGTGCAATTTAATAAATACACACAAACACACACGGAGATCGTGAAGTG ATACTCGCACTGTCGCCGCCTATTTCGCGCGGCGTTCGAAATAGGTGTTG TTGTTATTGTTTTATCGGAGGTGTATTGCCTCATCTCGACTGCACGCGCG GTATTTCTTGTCCGGTGTTGACCAACCGCTGCTGAGTGTTGGCTGTTGCG TACGCGTGCAGCAAATGCCAACCTGCGCGGCCTTTAAAAGAAGAAACGAC AACCGCTGCTGCTGGCTGGCTGTCTCTACAGAGCTCGGTTCGGATCACGA GCCAGTCGGCCGGTCGCTTGCTCAATATTGCACATTAATTACCATAAAAA AAGTAACAAAATAGCGCGTGTTTGCCCTTCCACGCAGCCCCCTGCGTACG CCACCGGTAATTCGAACGAGTACTGTCTCGAGCACCGCACCAGGAGAGAG GCGCATCAGGTTTGGCAGCATCATGCTGCGGTATGTATGTGATGCCCTTA TTCCCTCGTACGTGCGTCTCTCTCCCCTCTCTCTCTCTTCTGTCTGTATT TGCACCTCACAGGTGGATGGCATGATTTCTTGTCTTGCTAGCCGGAGCGG AACCAAGTCAGACAGCTTTGCGATAGACTACCAAGCGACGTTGAACTGCC TCGATGTCGCGAAGATGGAGGGCGCCAACCACTTCGTGCTCTTGTCGGCT TTCTGCGTCAAAAAGCCCACGCTCCAGGTGTGAATCGTGTTTGTGTGTGT GTGTGTTTTTGTGTGTGTGTATTTATTAAATTGCACATAACCGCGCAATC CGGCTCTGTCATGATAGCTCTTCTAGGCTACTCTCGCATTGACCCTCCCC ATGGGGGATTCAATCATATTTGCTCTGTGTGTGTGTGTGTGTGTGTGTGT TCTGATCCACTGTAGTTTCAGAAAGCGAAGCTCAGGTTCGAAAACGAGTT GATCAAGGCGGGGGAGGCGGGGGAGATCGGGTACAGCGTCGTGAGACCTA CCGCCTTCTTCAAGAGTGTGTCGGGACAGCTGGAGGTGCGATACGGGACG AGACGACCCGCCCTACCCTGTGAACGATGTTATGCATTTTGTCTAGTCTT TGGTTATCCGTGCTTGACTCTACCCGCTGTCAAGGGCTGTGCCCGGCTTT TTCTACATTAATCGCATTACGCCGATGCCCTTATGTGTATGTGTATGTAT TTATTAACTTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATT CTATACCACTCGTATTGATCCTCCTAGGGGGGGATCAATGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTTTATGTATATTTATGAAACTACACATAACTG CGCAATCCGGTCCTGTCATGCTCGTCTTTCTAAGTTACACGCATTAATCC TCCAAGTGGGGGATCAGTTATATTTGCTACGAAGACCTCTCACCAGACGT GACAAAGGAGACACATACTCTCTATATATTTTGCTGTCGAATGCTAACTC CGCTCAGGCCCCGGCCCGTCGCCTCCTCCTCCCCCTCCCCGTCCCCTTCC CCCTTTTGTGTCTCTCCCAAAACTGGCAAGGTTGTTCAAAGCGGGGCCCC CTTCGTCGTGTTCGGGGACGGGAACATGTGCAAGTGTAATCCGATCGCCG AGGCTGATTTGGTGAGT
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Coding sequence (CDS) from alignment at H-elongata_contig61239:717..3383-

>mRNA_H-elongata_contig61239.13670.1 ID=mRNA_H-elongata_contig61239.13670.1|Name=mRNA_H-elongata_contig61239.13670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig61239:717..3383- (Himanthalia elongata Himel1 dioecious)
ATGACGCTGCGGGGCAAGTCGCCGACAGACACTACCGTGGCGGTGGCCGG
GTCAACGGGTTATATCGGGAAGTTCGTCGCCTTGGAGTGCGTCCGACGCG
GCTACAGGACCATAGCGCTTACGCGGAACGCCGGCGCGGTGATCGAGGGC
GCGGAGATGGTCGTGGCGGACGTGACGGATCCGTCGAGTATCGCGGCCGC
GCTAGAGGGTCGAAATATGACGCTGCGGGGCAAGTCGCCGACAGACACTA
CCGTGGCGGTGGCCGGGTCAACGGGTTATATCGGGAAGTTCGTCGCCTTG
GAGTGCGTCCGACGCGGCTACAGGACCATAGCGCTTACGCGGAACGCCGG
CGCGGTGATCGAGGGCGCGGAGATGGTCGTGGCGGACGTGACGGATCCGT
CGAGTATCGCGGCCGCGCTAGAGGGTCGAAATGTGGATGGCATGATTTCT
TGTCTTGCTAGCCGGAGCGGAACCAAGTCAGACAGCTTTGCGATAGACTA
CCAAGCGACGTTGAACTGCCTCGATGTCGCGAAGATGGAGGGCGCCAACC
ACTTCGTGCTCTTGTCGGCTTTCTGCGTCAAAAAGCCCACGCTCCAGGTG
GATGGCATGATTTCTTGTCTTGCTAGCCGGAGCGGAACCAAGTCAGACAG
CTTTGCGATAGACTACCAAGCGACGTTGAACTGCCTCGATGTCGCGAAGA
TGGAGGGCGCCAACCACTTCGTGCTCTTGTCGGCTTTCTGCGTCAAAAAG
CCCACGCTCCAGTTTCAGAAAGCGAAGCTCAGGTTCGAAAACGAGTTGAT
CAAGGCGGGGGAGGCGGGGGAGATCGGGTACAGCGTCGTGAGACCTACCG
CCTTCTTCAAGAGTGTGTCGGGACAGCTGGAGTTTCAGAAAGCGAAGCTC
AGGTTCGAAAACGAGTTGATCAAGGCGGGGGAGGCGGGGGAGATCGGGTA
CAGCGTCGTGAGACCTACCGCCTTCTTCAAGAGTGTGTCGGGACAGCTGG
AGGTTGTTCAAAGCGGGGCCCCCTTCGTCGTGTTCGGGGACGGGAACATG
TGCAAGTGTAATCCGATCGCCGAGGCTGATTTGGTGAGTGTTGTTCAAAG
CGGGGCCCCCTTCGTCGTGTTCGGGGACGGGAACATGTGCAAGTGTAATC
CGATCGCCGAGGCTGATTTGGTGAGT
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