mRNA_H-elongata_contig61230.13669.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61230.13669.1
Unique NamemRNA_H-elongata_contig61230.13669.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61230.13669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61230contigH-elongata_contig61230:1356..3428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-21_006290.1
Exons3
Model size1304
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61230.13669.1prot_H-elongata_contig61230.13669.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61230 1366..2611 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.7717965-UTR-H-elongata_contig61230:1355..13651622930987.7717965-UTR-H-elongata_contig61230:1355..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61230 1356..1365 +
1691679652.0713775-UTR-H-elongata_contig61230:1355..13651691679652.0713775-UTR-H-elongata_contig61230:1355..1365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61230 1356..1365 +
1622930987.8547115-UTR-H-elongata_contig61230:2611..34281622930987.8547115-UTR-H-elongata_contig61230:2611..3428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61230 2612..3428 +
1691679652.1174383-UTR-H-elongata_contig61230:2611..34281691679652.1174383-UTR-H-elongata_contig61230:2611..3428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61230 2612..3428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.7870176-CDS-H-elongata_contig61230:1365..15901622930987.7870176-CDS-H-elongata_contig61230:1365..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 1366..1590 +
1691679652.0813487-CDS-H-elongata_contig61230:1365..15901691679652.0813487-CDS-H-elongata_contig61230:1365..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 1366..1590 +
1622930987.8087983-CDS-H-elongata_contig61230:1923..19971622930987.8087983-CDS-H-elongata_contig61230:1923..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 1924..1997 +
1691679652.096933-CDS-H-elongata_contig61230:1923..19971691679652.096933-CDS-H-elongata_contig61230:1923..1997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 1924..1997 +
1622930987.834406-CDS-H-elongata_contig61230:2433..26111622930987.834406-CDS-H-elongata_contig61230:2433..2611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 2434..2611 +
1691679652.1082575-CDS-H-elongata_contig61230:2433..26111691679652.1082575-CDS-H-elongata_contig61230:2433..2611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61230 2434..2611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61230.13669.1

>prot_H-elongata_contig61230.13669.1 ID=prot_H-elongata_contig61230.13669.1|Name=mRNA_H-elongata_contig61230.13669.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MVGVPTRRLDQLFAHDRQLPTAVAAAMEVYHRRHFSGHSGKLEDKRHKGS
TGGKDDTKESYNFLDRDERLAGRSTRDLAPDKSAQAVGDGEELEFRNMTM
WQRVKYIRSTAKLMWKRYGLVAIGTSLVLYLGGFGILYTSLATGLVDPNV
SVATFHKN*
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mRNA from alignment at H-elongata_contig61230:1356..3428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61230.13669.1 ID=mRNA_H-elongata_contig61230.13669.1|Name=mRNA_H-elongata_contig61230.13669.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2073bp|location=Sequence derived from alignment at H-elongata_contig61230:1356..3428+ (Himanthalia elongata Himel1 dioecious)
AAGGTGTGCGATGGTGGGAGTCCCCACCCGCCGGCTCGATCAGTTATTCG
CTCATGATCGCCAGTTGCCAACCGCGGTTGCGGCAGCGATGGAGGTTTAC
CATCGCCGTCACTTCTCAGGCCATTCGGGTAAGCTCGAGGACAAGCGGCA
CAAGGGCTCCACAGGAGGAAAGGACGACACGAAAGAATCATACAACTTCC
TTGATCGCGACGAACGCTTGGCCGGAAGGTCCACGGTGAGCGTTTGTCAA
GCTGTTGCAACGAACAAATCTAGGTCTCTCTTCGTGCAACGTGTGAACAA
GATCAAGCTTCGTAAAACAATCGTGTGTTCTGCAGCGCTATATATTGCTT
CATGTTTACATCACGTGTTGTGGAAGCTTTATACAGTCAGTGTGCAACGA
TTCAAAGCTTGTACCGATGTAGTATAACATCTCTGGCGACCATTCATAAC
GGTATCAAGTAGTTAGTTCCATATCGACTATTCATACTTGAAAGCATCGC
ATATAGGCTCTTTTCCCAGTCTCGTATCGTGTGTTATACGTGTGCATGTT
CGTCTGAACCCCGAACAGCGTGACCTCGCGCCAGACAAGTCAGCACAAGC
GGTAGGAGACGGTGAAGAGCTGGAGTTCAGGAACATGACCATGTATGTAT
AAACTTTACGTTACCACCTTCCGATAAAAGTGTTTGTCTCTGTCTGTTGT
TATACTGCACCATCATAAAAGACGAGATGCTGCGGCGCCTCGGTTCTTAC
CCTCCCAGCGGGCTCACGAATGTCACCGAAGGGCGTCTTTACGCATGTGG
CTGTAAAAAACTTCCTGTACCTTAACCCTTTTGGAACTGGATTTCAAGTT
TTATACTCAATTTAGTCTGTAAAAAAGAACAGATCGGGGTTTCATAGGGG
ATGAATAAAACCCGCCGGTCTTGCATCGTTGAGGTTAATCATTGGTGCCT
TAACGCTTCGCCCCCATCCTCCAATAGCAAAACACAGTGGGTGCTTCGTA
CGAACGGTAATCCGTTCCAGCAGCAACCCACGTGTGTATCGTTCGCCGTG
ATATCTTCCCATTGCCCCACTTGGGCAGGTGGCAGCGTGTGAAGTACATC
AGAAGTACGGCTAAGCTCATGTGGAAACGATATGGATTGGTGGCGATTGG
AACGAGCCTGGTGCTCTACCTGGGAGGTTTTGGAATTCTGTACACTTCGC
TTGCCACGGGCTTAGTGGACCCTAATGTGAGCGTGGCCACTTTCCATAAG
AATTGACTATACCGACATACACACACCCTGAGTGCATCAGTTCGATCCCG
TGGTGTAGCAGGTCGGATGGATCGGTGACTAGGAGAGGCTGCTCCGATGT
CCTGGAGTTGTCTCGCGGTTGCTTGGTTTCTTGTCGCGGGCGTGTTGGTC
ATGTGCAATGTGATATCGATGCTTTTACCCCCCATAGAGCAATTAGACCA
GCAGGACGAGGCTGCTACAGTGATCTACTATAGACGTGTTTCGAAACAAA
GAGTTAGCTTATGGCTCGTCGAGGAGGTTGTGGGACATCTCCCTTATCTC
CTTCCAGCGCGAAATCGGTTTTACTTCGGGCCTCTGAGAAGAGCGCTTCT
AAGAGCTTCATACAAACTGTTGGAATTTGTATTAAAAAAACAGTTCGCGT
GGTATCCTAAACTTCATCCCAAATTCTTCGTGCAAAAGAAAAATGTGTTT
CGTATCTAATTGGGCGATTTTCGTAAAAACGTTGCACGCGAAAGTTTTAA
GGTGCCGTAGAGTTTTCAACTGCCCCTGGAAACTTTGCTTATAAGTTATA
GAGTTTTCAGATGCTCCTGATTTCTAAAAGATAAGGATGCAACAACAATA
GACGATGGAAACAGGCGACGTGACTATTGACCAGTGGTAGCAGTGCCCAG
ACCGACGCCCTGGAAGCCAATACTCGCCATGCCGATCGCACGCGCGGGGG
GGGAACTTTGAAGTCGTGTTTCGGGGCGGAACGGTCAGTGGTGGCCGGAA
ATTGACTGAAGTTTATGACGAACTTTTACCCTGCTGCATGAGGTTATTTC
CAACGATCCAAGTATGAGGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig61230:1356..3428+

>mRNA_H-elongata_contig61230.13669.1 ID=mRNA_H-elongata_contig61230.13669.1|Name=mRNA_H-elongata_contig61230.13669.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig61230:1356..3428+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGGAGTCCCCACCCGCCGGCTCGATCAGTTATTCGCTCATGATCG
CCAGTTGCCAACCGCGGTTGCGGCAGCGATGGAGGTTTACCATCGCCGTC
ACTTCTCAGGCCATTCGGGTAAGCTCGAGGACAAGCGGCACAAGGGCTCC
ACAGGAGGAAAGGACGACACGAAAGAATCATACAACTTCCTTGATCGCGA
CGAACGCTTGGCCGGAAGGTCCACGATGGTGGGAGTCCCCACCCGCCGGC
TCGATCAGTTATTCGCTCATGATCGCCAGTTGCCAACCGCGGTTGCGGCA
GCGATGGAGGTTTACCATCGCCGTCACTTCTCAGGCCATTCGGGTAAGCT
CGAGGACAAGCGGCACAAGGGCTCCACAGGAGGAAAGGACGACACGAAAG
AATCATACAACTTCCTTGATCGCGACGAACGCTTGGCCGGAAGGTCCACG
CGTGACCTCGCGCCAGACAAGTCAGCACAAGCGGTAGGAGACGGTGAAGA
GCTGGAGTTCAGGAACATGACCATCGTGACCTCGCGCCAGACAAGTCAGC
ACAAGCGGTAGGAGACGGTGAAGAGCTGGAGTTCAGGAACATGACCATGT
GGCAGCGTGTGAAGTACATCAGAAGTACGGCTAAGCTCATGTGGAAACGA
TATGGATTGGTGGCGATTGGAACGAGCCTGGTGCTCTACCTGGGAGGTTT
TGGAATTCTGTACACTTCGCTTGCCACGGGCTTAGTGGACCCTAATGTGA
GCGTGGCCACTTTCCATAAGAATTGAGTGGCAGCGTGTGAAGTACATCAG
AAGTACGGCTAAGCTCATGTGGAAACGATATGGATTGGTGGCGATTGGAA
CGAGCCTGGTGCTCTACCTGGGAGGTTTTGGAATTCTGTACACTTCGCTT
GCCACGGGCTTAGTGGACCCTAATGTGAGCGTGGCCACTTTCCATAAGAA
TTGA
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