mRNA_H-elongata_contig61222.13668.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61222.13668.1
Unique NamemRNA_H-elongata_contig61222.13668.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.530e-15
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            PT+  +V  S ++  +E A R EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:   73 PTTYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 173
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.690e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:   10 RKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            +K  N+   P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  204 QKPSNVKAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 313
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.110e-14
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++  +S  P+AA +K + AV
Sbjct:  122 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAV 222
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.490e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  108 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 208
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.880e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  458 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAV 558
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.910e-14
Identity = 40/112 (35.71%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:   10 RKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            +K+ ++   P +  +V+ S +   +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  256 QKLSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 365
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.980e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  648 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 748
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.020e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  359 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 459
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.030e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  500 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 600
[Close]
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K0G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.550e-13
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   37 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 345
            P +  +V+ S ++  +E   + EI+G    G F  V E  +P+ RK ++SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  803 PMTYKDVMCSKYKVFWEAVMKKEIDGHDKTGIFTKVKE--LPEGRKAISSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 903
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEA7_9PHAE8.530e-1539.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.690e-1436.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE2.110e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.490e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE5.880e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE5.910e-1435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE5.980e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.020e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE6.030e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0G6_9PHAE1.550e-1336.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61222contigH-elongata_contig61222:2947..3291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog67593.Physo132312
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QIIB@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.6286693-CDS-H-elongata_contig61222:2946..32911622930987.6286693-CDS-H-elongata_contig61222:2946..3291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61222 2947..3291 -
1691679652.059158-CDS-H-elongata_contig61222:2946..32911691679652.059158-CDS-H-elongata_contig61222:2946..3291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61222 2947..3291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61222.13668.1prot_H-elongata_contig61222.13668.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61222 2947..3291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61222.13668.1

>prot_H-elongata_contig61222.13668.1 ID=prot_H-elongata_contig61222.13668.1|Name=mRNA_H-elongata_contig61222.13668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MPTRKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDE
DKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETT
SPKPAAAPVKMITAV
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mRNA from alignment at H-elongata_contig61222:2947..3291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61222.13668.1 ID=mRNA_H-elongata_contig61222.13668.1|Name=mRNA_H-elongata_contig61222.13668.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig61222:2947..3291- (Himanthalia elongata Himel1 dioecious)
ATGCCCACGAGAAAAATTCAAAATTTGCCGCCGCCTCCAACATCTCAAGC
CGAAGTGATACGGTCTCCCTTCCGAAAGACGTTCGAGGACGCGCAACGCG
TTGAGATCAACGGTCTTCTCGACGTTGGGTGCTTTGCGCCCGTAGATGAG
GATAAAATCCCTAAAGACCGTAAGATCGTCGCCTCGAAGTGGGTCCACAC
CTACAAAGGCGACGATCAGGGTTACTGTGTGAAGACAAAGTCCCGGCAAG
TGGCGAAGGGTTTCAGTCAAGTGGTAGGCGTCGACTACAACGAAACAACT
TCTCCGAAGCCAGCTGCTGCCCCCGTCAAGATGATAACGGCAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig61222:2947..3291-

>mRNA_H-elongata_contig61222.13668.1 ID=mRNA_H-elongata_contig61222.13668.1|Name=mRNA_H-elongata_contig61222.13668.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig61222:2947..3291- (Himanthalia elongata Himel1 dioecious)
ATGCCCACGAGAAAAATTCAAAATTTGCCGCCGCCTCCAACATCTCAAGC
CGAAGTGATACGGTCTCCCTTCCGAAAGACGTTCGAGGACGCGCAACGCG
TTGAGATCAACGGTCTTCTCGACGTTGGGTGCTTTGCGCCCGTAGATGAG
GATAAAATCCCTAAAGACCGTAAGATCGTCGCCTCGAAGTGGGTCCACAC
CTACAAAGGCGACGATCAGGGTTACTGTGTGAAGACAAAGTCCCGGCAAG
TGGCGAAGGGTTTCAGTCAAGTGGTAGGCGTCGACTACAACGAAACAACT
TCTCCGAAGCCAGCTGCTGCCCCCGTCAAGATGATAACGGCAGTCATGCC
CACGAGAAAAATTCAAAATTTGCCGCCGCCTCCAACATCTCAAGCCGAAG
TGATACGGTCTCCCTTCCGAAAGACGTTCGAGGACGCGCAACGCGTTGAG
ATCAACGGTCTTCTCGACGTTGGGTGCTTTGCGCCCGTAGATGAGGATAA
AATCCCTAAAGACCGTAAGATCGTCGCCTCGAAGTGGGTCCACACCTACA
AAGGCGACGATCAGGGTTACTGTGTGAAGACAAAGTCCCGGCAAGTGGCG
AAGGGTTTCAGTCAAGTGGTAGGCGTCGACTACAACGAAACAACTTCTCC
GAAGCCAGCTGCTGCCCCCGTCAAGATGATAACGGCAGTC
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