mRNA_H-elongata_contig6116.13664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6116.13664.1
Unique NamemRNA_H-elongata_contig6116.13664.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6116.13664.1 vs. uniprot
Match: D7G3Q5_ECTSI (Type I fatty acid synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q5_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.120e-23
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 ELGESDSLQEQVGMDSLQAVEFRRILCAQLGRQSIPTTLAYDCPTAGSMADELLRTASTTPPSNLKPPL 207
            ELGESDSL+EQVGMDSLQAVEFRRI+C QLGR+SIPTTLAYDCPTAG MADELLRTA   PPS    P+
Sbjct: 2554 ELGESDSLKEQVGMDSLQAVEFRRIICMQLGRRSIPTTLAYDCPTAGKMADELLRTA---PPSASPKPM 2619
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6116.13664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Q5_ECTSI1.120e-2381.16Type I fatty acid synthase, putative n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6116contigH-elongata_contig6116:1629..2490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue7.8e-21
Seed eggNOG ortholog2880.D7G3Q5
KEGG koko:K22148
EggNOG free text desc.phosphopantetheine binding
EggNOG OGsCOG0318@1,COG3321@1,KOG1176@2759,KOG1202@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.137235-CDS-H-elongata_contig6116:1628..17151622930987.137235-CDS-H-elongata_contig6116:1628..1715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 1629..1715 +
1691679651.8740766-CDS-H-elongata_contig6116:1628..17151691679651.8740766-CDS-H-elongata_contig6116:1628..1715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 1629..1715 +
1622930987.1561897-CDS-H-elongata_contig6116:2212..24881622930987.1561897-CDS-H-elongata_contig6116:2212..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 2213..2488 +
1691679651.8845847-CDS-H-elongata_contig6116:2212..24881691679651.8845847-CDS-H-elongata_contig6116:2212..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6116 2213..2488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6116.13664.1prot_H-elongata_contig6116.13664.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6116 1629..2488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6116.13664.1

>prot_H-elongata_contig6116.13664.1 ID=prot_H-elongata_contig6116.13664.1|Name=mRNA_H-elongata_contig6116.13664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
ELGESDSLQEQVGMDSLQAVEFRRILCAQLGRQSIPTTLAYDCPTAGSMA
DELLRTASTTPPSNLKPPLTRPDIPPKAVDRKSTIIPNRLAAAATRQFRG
ASASNGSAQAFDEGGLWEEEM
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mRNA from alignment at H-elongata_contig6116:1629..2490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6116.13664.1 ID=mRNA_H-elongata_contig6116.13664.1|Name=mRNA_H-elongata_contig6116.13664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=862bp|location=Sequence derived from alignment at H-elongata_contig6116:1629..2490+ (Himanthalia elongata Himel1 dioecious)
GAACTTGGGGAGTCTGATAGCCTGCAAGAGCAAGTGGGTATGGACAGTCT
GCAGGCCGTGGAGTTCCGCCGCATCCTTTGTGCTCAGGTACAACAACGTG
CCCGAGAATATGGACCGGCCTGTAGTCCCTGTGAAGCGATCACCTCGAAA
TAGAAAGAATCAGACAGAGGGAAAATAAAAGAGGGTGTACAACGCGGCGG
TTATTTTGCATGGGGTTAGGATCGTCGACGGGGGCTTGGAAAACATCTTA
ACGTTTATATTAATTTACTATGTAATGTATACATAACATGTAATATTTCT
TTCTGATGAGGAGGCAGGATTGGAGCGCATTTGTCCGCGAAAGACCTAGC
GGTGGTGGCATCCGATCGACCCCCTTCGATCGCTCATTCAATTGGGCAAA
AGCCATGAGGCGCCTCGACCACATCGTCTTTTGTCTCGCCCGTTTCATCG
AAGCCCAATTCGTGTTCCATCTTAAAATGTTTCCTTTTTCAGTCCCCCCC
CCCCCGTGGTCCTTCCCCTGTCCGCGACCTCTCCCCCTCTTTCTTCACGC
TCTTCATGGAAAATCACGCGTGCTATCGATTTAGCTGGGGCGCCAGAGTA
TCCCAACGACGCTGGCGTACGATTGTCCTACTGCCGGGAGCATGGCCGAT
GAGCTTCTAAGGACCGCGTCGACAACGCCTCCCTCTAACTTGAAACCCCC
TCTAACAAGACCTGATATTCCCCCCAAGGCCGTTGACAGAAAGTCGACTA
TAATCCCCAACCGTTTGGCGGCCGCGGCGACGAGGCAGTTCCGTGGAGCA
AGCGCTTCTAATGGCAGCGCGCAGGCATTTGATGAGGGAGGTCTATGGGA
AGAAGAAATGCA
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Coding sequence (CDS) from alignment at H-elongata_contig6116:1629..2490+

>mRNA_H-elongata_contig6116.13664.1 ID=mRNA_H-elongata_contig6116.13664.1|Name=mRNA_H-elongata_contig6116.13664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig6116:1629..2490+ (Himanthalia elongata Himel1 dioecious)
GAACTTGGGGAGTCTGATAGCCTGCAAGAGCAAGTGGGTATGGACAGTCT
GCAGGCCGTGGAGTTCCGCCGCATCCTTTGTGCTCAGGAACTTGGGGAGT
CTGATAGCCTGCAAGAGCAAGTGGGTATGGACAGTCTGCAGGCCGTGGAG
TTCCGCCGCATCCTTTGTGCTCAGCTGGGGCGCCAGAGTATCCCAACGAC
GCTGGCGTACGATTGTCCTACTGCCGGGAGCATGGCCGATGAGCTTCTAA
GGACCGCGTCGACAACGCCTCCCTCTAACTTGAAACCCCCTCTAACAAGA
CCTGATATTCCCCCCAAGGCCGTTGACAGAAAGTCGACTATAATCCCCAA
CCGTTTGGCGGCCGCGGCGACGAGGCAGTTCCGTGGAGCAAGCGCTTCTA
ATGGCAGCGCGCAGGCATTTGATGAGGGAGGTCTATGGGAAGAAGAAATG
CTGGGGCGCCAGAGTATCCCAACGACGCTGGCGTACGATTGTCCTACTGC
CGGGAGCATGGCCGATGAGCTTCTAAGGACCGCGTCGACAACGCCTCCCT
CTAACTTGAAACCCCCTCTAACAAGACCTGATATTCCCCCCAAGGCCGTT
GACAGAAAGTCGACTATAATCCCCAACCGTTTGGCGGCCGCGGCGACGAG
GCAGTTCCGTGGAGCAAGCGCTTCTAATGGCAGCGCGCAGGCATTTGATG
AGGGAGGTCTATGGGAAGAAGAAATG
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