mRNA_H-elongata_contig61108.13657.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: D7G6E1_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E1_ECTSI) HSP 1 Score: 127 bits (318), Expect = 1.060e-33 Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 1
Query: 13 DGHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
DGH+LYMGKDK+ENEDLIRYG PEDVWFHVDNLSSAHVYLRMNRGEK+K+L P LLVECC+LVK +
Sbjct: 9 DGHMLYMGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMNRGEKLKELDPALLVECCTLVKAN 74
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A835Z4I1_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I1_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.660e-31 Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 1
Query: 16 GHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
GH LYMGKDK+ENEDLIRYG+PEDVWFHVDNLSSAHVYLRMN+GEK+K++ PE+++ECC LVK +
Sbjct: 9 GHTLYMGKDKYENEDLIRYGLPEDVWFHVDNLSSAHVYLRMNKGEKLKEVLPEVIMECCQLVKAN 73
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A7S0GIL2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIL2_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.300e-27 Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 1
Query: 16 GHLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK---VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ 312
G+ LYMGKDK+ENEDLI+YG+PEDVWFHVD++SSAHVYLR GE + D++PEL+++CCSLVK ++ +LN + R+K ++ S + + H+QQ
Sbjct: 18 GYTLYMGKDKYENEDLIKYGLPEDVWFHVDDMSSAHVYLRQKTGELLADISPELMLDCCSLVKANSIAGCKLNSVYVIYTRWKNLKKTSRMVEGEVSYHRQQ 119
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A672IGJ2_SALFA (Coiled-coil domain-containing protein 25 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IGJ2_SALFA) HSP 1 Score: 101 bits (252), Expect = 2.170e-25 Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK 204
+YMGKDK+ENEDLIRYG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+L++C LVK
Sbjct: 16 IYMGKDKYENEDLIRYGWPEDIWFHVDKLSSAHVYLRMPKGQTIDDIPPEVLIDCAQLVK 75
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A452DR27_CAPHI (Coiled-coil domain-containing protein 25 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452DR27_CAPHI) HSP 1 Score: 101 bits (251), Expect = 2.990e-25 Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
+ +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+ E+L++C LVK +
Sbjct: 14 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 77
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A337SDQ0_FELCA (Coiled-coil domain-containing protein 25 n=35 Tax=Eutheria TaxID=9347 RepID=A0A337SDQ0_FELCA) HSP 1 Score: 101 bits (251), Expect = 3.160e-25 Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
+ +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+ E+L++C LVK +
Sbjct: 15 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A0S7LUL1_9TELE (Coiled-coil domain-containing protein 25 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LUL1_9TELE) HSP 1 Score: 103 bits (257), Expect = 3.560e-25 Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQ 309
+YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+LV+C LVK + +N + A KKT QIG H+ ++
Sbjct: 55 IYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGKTIDDIPPEVLVDCAQLVKNNSIQGCKMNNINVVYTAWANLKKTGDMDVG-QIGFHKQKE 154
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI00122F24FF (coiled-coil domain-containing protein 25 isoform X3 n=1 Tax=Globicephala melas TaxID=9731 RepID=UPI00122F24FF) HSP 1 Score: 101 bits (251), Expect = 3.740e-25 Identity = 41/64 (64.06%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 210
+ +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+ E+L++C LVK +
Sbjct: 15 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI001130B46A (coiled-coil domain-containing protein 25 isoform X2 n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI001130B46A) HSP 1 Score: 102 bits (253), Expect = 4.500e-25 Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 19 HLLYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQ 309
+ +YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G ++D+ E+L++C LVK + +N + A KKT QIG H+H++
Sbjct: 14 YTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGLTIEDIPKEVLIDCAQLVKNNSIQGCKMNNINVVYTPWANLKKTGDMDVG-QIGFHRHKE 115
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A3B3TTG9_9TELE (Coiled-coil domain-containing protein 25 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=A0A3B3TTG9_9TELE) HSP 1 Score: 103 bits (258), Expect = 5.570e-25 Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 25 LYMGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK------VSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ*LYCLHRWLSYVSDLL 360
+YMGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+LV+C LVK + +N + A KKT QIG H+ ++ + + + ++ + + L
Sbjct: 16 IYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRMPKGKTIDDIPPEVLVDCAQLVKNNSIQGCKMNNINVVYTAWANLKKTGDMDVG-QIGFHKQKEVKIVAVEKKINEIVNRL 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61108.13657.1 >prot_H-elongata_contig61108.13657.1 ID=prot_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLback to top mRNA from alignment at H-elongata_contig61108:1105..2159+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61108.13657.1 ID=mRNA_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1055bp|location=Sequence derived from alignment at H-elongata_contig61108:1105..2159+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61108:1105..2159+ >mRNA_H-elongata_contig61108.13657.1 ID=mRNA_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig61108:1105..2159+ (Himanthalia elongata Himel1 dioecious)back to top |