mRNA_H-elongata_contig61070.13653.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 144 bits (364), Expect = 2.200e-36 Identity = 81/204 (39.71%), Postives = 122/204 (59.80%), Query Frame = 1
Query: 1 EPTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILH--GTMVVIIVVYVDD 600
+P ++ EA +S+EWPKWK IA+EM + G + +VE PK ++G++ VF+ K + +G IE YK RLVAQG QV GI + E+ +P ASIR++L++ WE Q+DV YL ++EEEIY+ P + K+ V LK+ +YGL +G KK EL + G S+ D CVF W+ + ++++I + VDD
Sbjct: 921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDD 1123
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY) HSP 1 Score: 139 bits (350), Expect = 8.190e-35 Identity = 78/204 (38.24%), Postives = 120/204 (58.82%), Query Frame = 1
Query: 1 EPTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILH--GTMVVIIVVYVDD 600
+P ++ EA +S+EWPKWK I +EM + G + +VE PK ++G++ VF+ K + + IE YK RLVAQG QV GI + E+ +P ASI ++L++ WE Q+DV YL ++EEEIY++ P + K+ V LK+ +YGL +G KK EL + G S+ D CVF W+ + ++++I + VDD
Sbjct: 111 DPASLNEAMQSTEWPKWKEAIVKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEREIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIHLILALAACYDWELHQMDVKGAYLNGDLEEEIYMQQPPGQAEPGKEHLVCRLKRPLYGLKQSGRQFHKKISGELGSMGLTRSKVDHCVF-WLRNEEDVLILLIALSVDD 313
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU) HSP 1 Score: 134 bits (338), Expect = 6.770e-33 Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 1
Query: 1 EPTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDDLLV 609
+PT++ EAQE+ +WPKW+ I EMD A + +V RP G V+G+R+VF RK D DG I++ K R+VAQG Q+ G+ Y E+ +P +S+R++L++ W QLDV YL +++EEIY+ P ++ V L+K++YGL AG KK+ + G S+AD F W G + ++ VDD+LV
Sbjct: 987 DPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAWYKKYRDAMTTLGMTRSEADHACF-WQHGGDSLAMVGTIVDDMLV 1190
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 134 bits (337), Expect = 8.950e-33 Identity = 77/199 (38.69%), Postives = 116/199 (58.29%), Query Frame = 1
Query: 4 PTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDD 600
P T EA SS+ KWK I E+D W++V P K + ++ VFK K DGRI+++K RLVA+G Q++G+ Y E+ +PT +I+++LS+ + G + Q DV +L E+EEE+Y++LP+ +S +V LKKA+YGL A +KF L+ GF+ QAD CV+ V ++V+YVDD
Sbjct: 635 PLTFDEAMNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKFNNFLQEFGFRQCQADKCVYNGEFEEKTV-LLVIYVDD 832
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI) HSP 1 Score: 134 bits (337), Expect = 9.040e-33 Identity = 72/207 (34.78%), Postives = 119/207 (57.49%), Query Frame = 1
Query: 1 EPTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDS----RKQVGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDDLLV 609
EP T EA+ S+W KW + + +MD W +V+ P G+ +G+R V+K K+D++G+ +++K RLVAQG QV G+ Y E+ +P S+R++L++ GW Q+DV YL ++EEE+Y+ P Y + V L+ +YGL +G KF +L A+G+ +++PCV+ G + I ++YVDD+L+
Sbjct: 731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYIRQPPGYEKGGSRRKNMVCKLRLPLYGLKQSGRQWNTKFHDKLIARGYTQCKSEPCVYVR-RKGGSISIALIYVDDVLI 936
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI) HSP 1 Score: 132 bits (332), Expect = 1.480e-32 Identity = 75/205 (36.59%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 1 EPTTMGEAQE--SSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDDLLV 609
EP + +A+ S+EW +WK+ + E+ T G W +VE G ++G+R V+K K+D+DG +YK RLVAQG Q +GI ++E+ +P ++R+V+S+ ALG +D+ YL ++ EE+Y++ P Y D +V LL++A+YGL AG +L + GF Q++PC+F G V I+ VYVDD+++
Sbjct: 22 EPVNLKQAKNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGRPV-ILAVYVDDIVI 225
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: I1R5L4_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=I1R5L4_ORYGL) HSP 1 Score: 128 bits (321), Expect = 1.720e-32 Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 1
Query: 4 PTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDDLLV 609
P ++ EA S + WK + EMD A G W+V ERP G +G + VFK+K+ DG IEKYK RLVA+G Q +G + ++ SP +IR++LS+ + G Q+DV T+L E++EEIY++ P+ ++ ++ V L K++YGL A +KF L + GF +++AD CV+ + G VI+ +YVDD+L+
Sbjct: 24 PKSISEAYASLDADYWKEVVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVY-YRHGGGEGVILCLYVDDILI 226
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: Q7XLA3_ORYSJ (OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XLA3_ORYSJ) HSP 1 Score: 130 bits (328), Expect = 4.050e-32 Identity = 78/204 (38.24%), Postives = 122/204 (59.80%), Query Frame = 1
Query: 4 PTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTMVVIIVVYVDDLLV 609
P ++ EA S + WK T+ EMD A G W+V ERP G +G + VFK+K+ DG IEKYK RL+A+G Q +G + ++ SP +IR++LS+ + G Q+DV T+L E++EEIY++ P+ ++ ++ V L K++YGL A +KF L + GF +++AD CV+ + G VI+ +YVDD+L+
Sbjct: 133 PKSISEAYASPDADYWKETVRSEMDSIIANGTWEVTERPYGCKPMGCKWVFKKKLRPDGTIEKYKARLIAKGYTQKEGGDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQASKQWHEKFDKTLTSAGFAVNEADKCVY-YRHGGGEGVILCLYVDDILI 335
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A177VSQ5_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VSQ5_9BASI) HSP 1 Score: 132 bits (332), Expect = 4.210e-32 Identity = 76/206 (36.89%), Postives = 123/206 (59.71%), Query Frame = 1
Query: 1 EPTTMGEAQE--SSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQVGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVF-RWILHGTMVVIIVVYVDDLLV 609
EP + +A+ S+EW +WK+ + E+ T G W +VE G ++G+R V+K K+D+DG +YK RLVAQG Q +GI ++E+ +P ++R+V+S+ ALG +D+ YL ++ EE+Y++ P Y D +V LL++A+YGL AG +L + GF Q++PC+F R+ G VI+ VYVDD+++
Sbjct: 691 EPVNLKQAKNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLISVGFSQVQSEPCLFVRFGAGGP--VILAVYVDDIVI 894
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Match: A0A5N6P044_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P044_9ASTR) HSP 1 Score: 130 bits (328), Expect = 4.740e-32 Identity = 82/207 (39.61%), Postives = 121/207 (58.45%), Query Frame = 1
Query: 1 EPTTMGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGSRQVKGIHYEESSSPTPAQASIRMVLSMITALGWEAWQLDVDMTYLEAEVEEEIYVELPEAYLDSRKQ--VGLLKKAMYGLVHAGLLR*KKFGIELEAKGFQISQADPCVFRWILHGTM--VVIIVVYVDDLLV 609
EP T +A SSE P+WK I E+D W++V+ P G LG R +FKRK+ DG I+KYK RLV +G RQ +G+ Y ++ SP SIR+VL++ E Q+DV ++L ++EEEIY+E PE + ++ V L K++YGL A +KF + GF+I++ D CV+ + TM VI+ +YVDD+L+
Sbjct: 70 EPQTYLDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTSFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVY---VKNTMRGYVILCLYVDDMLI 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61070.13653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61070.13653.1 >prot_H-elongata_contig61070.13653.1 ID=prot_H-elongata_contig61070.13653.1|Name=mRNA_H-elongata_contig61070.13653.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGEAQESSEWPKWKRTIAREMDGQTARGVWQVVERPKGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig61070:487..1095- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61070.13653.1 ID=mRNA_H-elongata_contig61070.13653.1|Name=mRNA_H-elongata_contig61070.13653.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig61070:487..1095- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61070:487..1095- >mRNA_H-elongata_contig61070.13653.1 ID=mRNA_H-elongata_contig61070.13653.1|Name=mRNA_H-elongata_contig61070.13653.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig61070:487..1095- (Himanthalia elongata Himel1 dioecious)back to top |