mRNA_H-elongata_contig61014.13645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61014.13645.1
Unique NamemRNA_H-elongata_contig61014.13645.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.120e-8
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            VRFR++VFRPFVGEIL+G+VSSCTK GIKV  D
Sbjct:   87 VRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLD 119          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A1E3PMM4_9ASCO (Uncharacterized protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PMM4_9ASCO)

HSP 1 Score: 52.0 bits (123), Expect = 6.500e-7
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            V FRL+VFRPFVGEIL G +SSC++DGI+V+ +
Sbjct:   70 VEFRLIVFRPFVGEILEGWISSCSEDGIRVKME 102          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A3N4L4F8_9PEZI (Uncharacterized protein n=2 Tax=Morchella TaxID=5193 RepID=A0A3N4L4F8_9PEZI)

HSP 1 Score: 51.6 bits (122), Expect = 9.310e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            V FRLVVFRPF GE+L+GR+SS T  GIKVR D
Sbjct:   70 VEFRLVVFRPFKGEVLTGRISSSTAHGIKVRTD 102          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: R8BER6_PHAM7 (Putative dna-directed rna polymerase iii polypeptide protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BER6_PHAM7)

HSP 1 Score: 51.6 bits (122), Expect = 1.030e-6
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            V FRL+VFRPF GE++ GR+SSC+ DGI +R D
Sbjct:   90 VEFRLIVFRPFKGEVMLGRISSCSPDGIHIRTD 122          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A1E4TEG9_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TEG9_9ASCO)

HSP 1 Score: 51.2 bits (121), Expect = 1.150e-6
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVR 93
            V FR++VFRPF+GE+L G +SSCT +GIKVR
Sbjct:   70 VEFRMIVFRPFIGEVLVGWISSCTSEGIKVR 100          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A250XJV4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJV4_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.350e-6
Identity = 22/30 (73.33%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKV 90
            VRFRLVVFRPFVGEIL GR+ SC+++G++V
Sbjct:   70 VRFRLVVFRPFVGEILVGRLKSCSREGLRV 99          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A1J7J5P9_9PEZI (RNA polymerase III subunit Rpc25 n=3 Tax=Coniochaeta TaxID=79808 RepID=A0A1J7J5P9_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.680e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            V FRLVVFRPF GE+L GR++S T+DGI +R D
Sbjct:   70 VEFRLVVFRPFKGEVLLGRITSATQDGISIRTD 102          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: Q6C9G5_YARLI (YALI0D11396p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C9G5_YARLI)

HSP 1 Score: 50.8 bits (120), Expect = 1.770e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            + FR+VVFRPFVGE+L G +SSCT +GIKV+ +
Sbjct:   70 ITFRMVVFRPFVGEVLEGWISSCTAEGIKVKME 102          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A2T7A368_TUBBO (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T7A368_TUBBO)

HSP 1 Score: 50.1 bits (118), Expect = 1.830e-6
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1
Query:    1 VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            V FR++VFRPF GE+L+GR+SS T  G+KVR D
Sbjct:   12 VEFRMIVFRPFKGEVLTGRISSATAAGVKVRTD 44          
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Match: A0A1E3Q2P1_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q2P1_LIPST)

HSP 1 Score: 50.4 bits (119), Expect = 2.650e-6
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1
Query:    7 FRLVVFRPFVGEILSGRVSSCTKDGIKVRAD 99
            FRL+VFRPFVGE+L G +SSC+++GI+VR D
Sbjct:   72 FRLIVFRPFVGEVLVGWISSCSEEGIRVRMD 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61014.13645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI1.120e-878.79RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A1E3PMM4_9ASCO6.500e-766.67Uncharacterized protein n=1 Tax=Nadsonia fulvescen... [more]
A0A3N4L4F8_9PEZI9.310e-772.73Uncharacterized protein n=2 Tax=Morchella TaxID=51... [more]
R8BER6_PHAM71.030e-663.64Putative dna-directed rna polymerase iii polypepti... [more]
A0A1E4TEG9_9ASCO1.150e-667.74Uncharacterized protein n=1 Tax=Tortispora caseino... [more]
A0A250XJV4_9CHLO1.350e-673.33Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A1J7J5P9_9PEZI1.680e-666.67RNA polymerase III subunit Rpc25 n=3 Tax=Coniochae... [more]
Q6C9G5_YARLI1.770e-663.64YALI0D11396p n=4 Tax=Yarrowia TaxID=4951 RepID=Q6C... [more]
A0A2T7A368_TUBBO1.830e-663.64RNA polymerase III subunit Rpc25-domain-containing... [more]
A0A1E3Q2P1_LIPST2.650e-667.74Uncharacterized protein n=1 Tax=Lipomyces starkeyi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61014contigH-elongata_contig61014:93..197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930985.1356835-CDS-H-elongata_contig61014:92..1971622930985.1356835-CDS-H-elongata_contig61014:92..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61014 93..197 -
1691679651.1476147-CDS-H-elongata_contig61014:92..1971691679651.1476147-CDS-H-elongata_contig61014:92..197Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61014 93..197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61014.13645.1prot_H-elongata_contig61014.13645.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61014 93..197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61014.13645.1

>prot_H-elongata_contig61014.13645.1 ID=prot_H-elongata_contig61014.13645.1|Name=mRNA_H-elongata_contig61014.13645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
VRFRLVVFRPFVGEILSGRVSSCTKDGIKVRADT*
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mRNA from alignment at H-elongata_contig61014:93..197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61014.13645.1 ID=mRNA_H-elongata_contig61014.13645.1|Name=mRNA_H-elongata_contig61014.13645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig61014:93..197- (Himanthalia elongata Himel1 dioecious)
GTACGCTTCCGGCTGGTGGTGTTCCGACCGTTCGTTGGAGAGATCCTGTC TGGGAGGGTGTCTTCGTGTACTAAGGATGGCATAAAGGTACGTGCGGATA CATAA
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Coding sequence (CDS) from alignment at H-elongata_contig61014:93..197-

>mRNA_H-elongata_contig61014.13645.1 ID=mRNA_H-elongata_contig61014.13645.1|Name=mRNA_H-elongata_contig61014.13645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig61014:93..197- (Himanthalia elongata Himel1 dioecious)
GTACGCTTCCGGCTGGTGGTGTTCCGACCGTTCGTTGGAGAGATCCTGTC
TGGGAGGGTGTCTTCGTGTACTAAGGATGGCATAAAGGTACGTGCGGATA
CATAAGTACGCTTCCGGCTGGTGGTGTTCCGACCGTTCGTTGGAGAGATC
CTGTCTGGGAGGGTGTCTTCGTGTACTAAGGATGGCATAAAGGTACGTGC
GGATACATAA
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