mRNA_H-elongata_contig6101.13644.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5KDM0_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM0_9PHAE) HSP 1 Score: 152 bits (385), Expect = 1.400e-42 Identity = 78/152 (51.32%), Postives = 101/152 (66.45%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
F M+GQ +LG MS RGKQAV GR Q ++GGL++ILVGDPA LPPVGA+ +W P+ G +++G + WL +N AVELT+V RQQG +QA FR L +AEG DDW++L+ + A TFDDAVH+FPTN+ AD WN
Sbjct: 71 FSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAHLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWN 222
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE) HSP 1 Score: 154 bits (388), Expect = 3.360e-40 Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
F M+GQ +LG MS RGKQAV GR Q ++GGL++ILVGDPAQLPPVGA +W P+ G +++G + WL +N AVELT+V RQQG +QA FR L +AEG DDW++L+ + A TFDDAVH+FPTN+ AD WN
Sbjct: 47 FSMVGQDILGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGARPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWN 198
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.660e-39 Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
F M+GQ +LG MS RGKQAV GR Q ++GGL++ILVGDPAQLPPVGA+ +W P+ G +++G + WL +N AVELT+V RQQG +QA FR L +AEG DDW++L+ + A TFDDAVH+FPTN+ AD WN
Sbjct: 451 FSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWN 602
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.760e-39 Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
F M+GQ +LG MS RGKQAV GR Q ++GGL++ILVGDPAQLPPVGA+ +W P+ G +++G + WL +N AVELT+V RQQG +QA FR L +AEG DDW++L+ + A TFDDAVH+FPTN+ AD WN
Sbjct: 1192 FSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWN 1343
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5KA18_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA18_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.280e-30 Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDA 646
F M+GQ +LG +S RGKQAV GR Q ++GGL++ILVGDPAQLPPVGA+ +W P+ G +++G + WL +N AVELT V RQQG +QA FR L +AEG DDW++L+ + A TFDDA
Sbjct: 569 FSMVGQDILGLISARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTRVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDA 706
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 128 bits (321), Expect = 3.040e-30 Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGRPCALSTLQ--GLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
F MIGQ +LG MS+R KQAV GR + GL+GGL +I+VGD QL V + +W+S P + +G WLG+NAAV+LT+V RQQG QA FR L +AEG DW L+ + A +FD+AVH+FPTN AD WN
Sbjct: 1261 FSMIGQDMLGMMSVRLKQAVEGRRTYWVDDRHLGLFGGLCIIMVGDIIQLLTVAQSPMWTSRPQSSALSGQGLYAWLGMNAAVQLTQVMRQQGAAQAAFRETLLRIAEGEATEADWNTLRPRFTTAVDAAERESFDNAVHIFPTNGAADDWN 1412
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.510e-20 Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGR--PCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQG 511
F M+GQ +LG MS RGKQAV GR Q ++GGL++ILVGDPAQLPPVGA+ +W P+ G +++G + WL +N AVELT+V RQQG
Sbjct: 880 FSMVGQDMLGLMSARGKQAVEGRRGDGIEDFRQDVFGGLSIILVGDPAQLPPVGASPLWKHNPSTGGLSMQGLQAWLSMNNAVELTQVMRQQG 972
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: A0A2H3FRQ0_FUSOX (ATP-dependent DNA helicase n=2 Tax=Fusarium TaxID=5506 RepID=A0A2H3FRQ0_FUSOX) HSP 1 Score: 85.9 bits (211), Expect = 1.060e-15 Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 2
Query: 245 MIGQALLGFMSIRGKQAVRGRPCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQGDDQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
M+G L ++ R +Q GR +GG+N+ILVGD QLPPV ++ P D H V G + N V L +V+RQQGDDQAGFR L+ V + + W+LL +R TFD A+ ++ ++ D +N
Sbjct: 226 MLGLRQLSWIDKRLRQVFPGRATEF------FGGMNIILVGDFFQLPPVANKPLYFDGPLKDLHEVSGQTAYRAFNHTVFLKKVQRQQGDDQAGFRLALSEVRGLKLSIESWKLLSQRVRVKLSQREVDTFDAALRIYSKKARVDEYN 367
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: UPI00109BC70A (uncharacterized protein LOC110236158 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC70A) HSP 1 Score: 80.5 bits (197), Expect = 9.280e-14 Identity = 54/155 (34.84%), Postives = 81/155 (52.26%), Query Frame = 2
Query: 239 FLMIGQALLGFMSIRGKQAVRGRPCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLG---LNAAVELTEVRRQQGDD--QAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
+ M+GQ G++ R +QA G+ + L+GG ++IL+GDPAQLPPV ++ S P+ T G +G+L N+ + LT+ +R QG D Q FR +L H+ GC+ DW +L R T T F D LF +N + +N
Sbjct: 1385 YSMLGQTTFGWIDRRCRQA-SGKN------EQLFGGKSIILIGDPAQLPPVADKPLYHSVPS----TAIGEQGYLAYRMFNSVILLTDNQRVQGSDSEQRIFRDLLKHIRNGCISTSDWNVLLT--RQPTSITNLDEFKDVTRLFYSNEEVGKYN 1526
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Match: UPI001EEA0166 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEA0166) HSP 1 Score: 77.4 bits (189), Expect = 8.620e-13 Identity = 58/156 (37.18%), Postives = 82/156 (52.56%), Query Frame = 2
Query: 233 VIFLMIGQALLGFMSIRGKQAVRGRPCALSTLQGLYGGLNLILVGDPAQLPPVGAAAIWSSAPAGDGHTVEGYRGWLGLNAAVELTEVRRQQ---GD-DQAGFRRVLAHVAEGCVMPDDWELLQVSMRSNTIATTAATFDDAVHLFPTNSKADAWN 688
V ++I + + +++ GK R R + L GGL +ILVGDPAQLPPV A +++S + A + EG +L + ++LTEVRRQQ GD DQ F L + EG D W+ LQ + IA F+DA +LF TN + N
Sbjct: 233 VKIIIIDEYSMLSLTMLGKIDARLREAKGNNL--FCGGLTVILVGDPAQLPPVAAPSLYSQSTAPFAN--EGRAAYLAFQSVIKLTEVRRQQVEDGDIDQQTFLDTLNSLREGNCSIDQWKFLQ-ARNPEAIANFGTDFEDATYLFATNEAVNRRN 383 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6101.13644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6101.13644.1 >prot_H-elongata_contig6101.13644.1 ID=prot_H-elongata_contig6101.13644.1|Name=mRNA_H-elongata_contig6101.13644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp MIGQALLGFMSIRGKQAVRGRPCALSTLQGLYGGLNLILVGDPAQLPPVGback to top mRNA from alignment at H-elongata_contig6101:5321..6185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6101.13644.1 ID=mRNA_H-elongata_contig6101.13644.1|Name=mRNA_H-elongata_contig6101.13644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=865bp|location=Sequence derived from alignment at H-elongata_contig6101:5321..6185+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6101:5321..6185+ >mRNA_H-elongata_contig6101.13644.1 ID=mRNA_H-elongata_contig6101.13644.1|Name=mRNA_H-elongata_contig6101.13644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig6101:5321..6185+ (Himanthalia elongata Himel1 dioecious)back to top |