mRNA_H-elongata_contig60962.13639.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60962.13639.1
Unique NamemRNA_H-elongata_contig60962.13639.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60962.13639.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.980e-8
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  157 QCRTVMNINLAKAGNWVLLEGVDASIHKTA 246
            Q RTVM+IN+AKAGNWVLLEGVDA+IHKTA
Sbjct:  560 QGRTVMDINMAKAGNWVLLEGVDATIHKTA 589
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60962.13639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE3.980e-886.67Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60962contigH-elongata_contig60962:1172..2711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog2880.D8LIZ9
Preferred nameEF-TU
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0468@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size247
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60962.13639.1prot_H-elongata_contig60962.13639.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60962 1172..2711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.6667178-CDS-H-elongata_contig60962:1171..12531622930984.6667178-CDS-H-elongata_contig60962:1171..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 1172..1253 -
1691679650.9754918-CDS-H-elongata_contig60962:1171..12531691679650.9754918-CDS-H-elongata_contig60962:1171..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 1172..1253 -
1622930984.6829393-CDS-H-elongata_contig60962:1709..17971622930984.6829393-CDS-H-elongata_contig60962:1709..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 1710..1797 -
1691679650.9879224-CDS-H-elongata_contig60962:1709..17971691679650.9879224-CDS-H-elongata_contig60962:1709..1797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 1710..1797 -
1622930984.7009308-CDS-H-elongata_contig60962:2067..21061622930984.7009308-CDS-H-elongata_contig60962:2067..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 2068..2106 -
1691679650.9972305-CDS-H-elongata_contig60962:2067..21061691679650.9972305-CDS-H-elongata_contig60962:2067..2106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 2068..2106 -
1622930984.7202296-CDS-H-elongata_contig60962:2674..27111622930984.7202296-CDS-H-elongata_contig60962:2674..2711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 2675..2711 -
1691679651.0061238-CDS-H-elongata_contig60962:2674..27111691679651.0061238-CDS-H-elongata_contig60962:2674..2711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60962 2675..2711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60962.13639.1

>prot_H-elongata_contig60962.13639.1 ID=prot_H-elongata_contig60962.13639.1|Name=mRNA_H-elongata_contig60962.13639.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
AHSFAGGERSEKGCTAARCGRDRKQGARGGVLHTGRGGYGDQGGDGHQHQ
PGQCRTVMNINLAKAGNWVLLEGVDASIHKTA
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mRNA from alignment at H-elongata_contig60962:1172..2711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60962.13639.1 ID=mRNA_H-elongata_contig60962.13639.1|Name=mRNA_H-elongata_contig60962.13639.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-elongata_contig60962:1172..2711- (Himanthalia elongata Himel1 dioecious)
GCACATTCCTTCGCCGGTGGCGAACGCTCAGAAAAAGGTGAGAAAAATCT
CGACGGCGCCTCGTAATGGGAGGCTCAGGATATACGGACGTGCTGCCACG
CGTCCAAAATCGTTTTACACACTTATGTCGCGCGTCCAGGCTTCGTGTGA
CGGTGTTCGCGATCGCACACGAAGTCAAGTCTCATTTTCGCTTGTCTGTA
CTGCCCTGGTTGTTGTGGACTCAAACGAGCTACAGCCACAGTACTCAAAT
GTGGGTATGGTGTGCTCCAGCGGTTGGGACCCAAGTGCCGAATTTGTCTT
CGAAAAGCAGTACAGATGCGAGATATTATGTTTGTACCGCTTTTGAAACA
GATCCGATCTCTCTCGCTTCTCTCGCTTCGTAGCTTAGCGTTGTCTCGCG
TCGCGCCAAGTGCGGCATCCACCCGTCAGACGGTAGCACGATGAGCTACA
CCCACCCCCAAATTTATAACCCCGTAACCCTCAACCCTTAACCATCTACT
CCTACCCTTCTCTTAGGCGGGCGAGAAGACCTCTTCCATTGCTTCCATTG
CCACTGCCATGGCCAAGTGTAATCCCCTTGGTGCCCTCATGTGCCCTGTT
GGCAGGATGTACAGCGGCTCGGTGCGGACGGGACAGAAAGCAAGGTAAAT
CAGGGGGGGGGTGTTGGATTCGGCCCTTCAGGCATTTTTTAGCATACTTC
GTGGTGCGCGGCGGTTGTGTGTTTTTGTGGCGAGGACGCTACTCACACGC
ATACCCATTGATAGGTTAATCGGGAGGGGGAGGGGAGGGGGGTGGACCGT
AACCCGTCTATGGTGGTGAGTCTTGTATGCAGAGGGGACACGTTATGTAT
GCATGTTCTCTATATAGTCGTTATCGTTATTACACCGTTATCGTGTGGTC
CCCGTCGCAAATAGGTGCTCGGGGAGGCGTACTCCACACAGGACGAGGAG
GATATGGCGATCAAGGAGGTGACGGCCATCAGCATCAGCCAGGGCAGTGC
AGGTGTAAAATATTTTCAAGACGCACTTTATCGGGAGCCTTGTAGTGTAG
ATTCGAGCTTTAAAAATGCGATACCGCTCACAGCAATGCGATACCTACAC
ACACACACATACCTTCCCACCTGCCAATCACAGCGGTCGAGACAGCGCAA
CCGCGATGATGTTAGCAGACAGAGGCAAGATAGGAAAAAATCGTCTAATA
ATCCTTTTGGAACTGAATTTCAATTTTTATATTGAATTTAGTATTAAAAA
AACAGATCGAGTTCCATAAAGGTTATTTTGGGAACTGAATTTCAATTTTT
ATATTGAATTTAGTATTTTAAAAAAACAGATCGAGTTCCATAAGGGTTAT
TAGTGTTATTAGTCTTTCTGTTCTGAGTAATATAATACCGGTGTCACATG
CACCCTGTTTTCTACTTATTTCATACATATTTTATTTTTTTCTCAATAAC
CGTGCAAGGACTGTAATGAACATCAACCTGGCCAAGGCTGGCAACTGGGT
GCTCTTGGAGGGCGTCGACGCCTCCATCCACAAGACGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig60962:1172..2711-

>mRNA_H-elongata_contig60962.13639.1 ID=mRNA_H-elongata_contig60962.13639.1|Name=mRNA_H-elongata_contig60962.13639.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig60962:1172..2711- (Himanthalia elongata Himel1 dioecious)
GCACATTCCTTCGCCGGTGGCGAACGCTCAGAAAAAGGCACATTCCTTCG
CCGGTGGCGAACGCTCAGAAAAAGGATGTACAGCGGCTCGGTGCGGACGG
GACAGAAAGCAAGGATGTACAGCGGCTCGGTGCGGACGGGACAGAAAGCA
AGGTGCTCGGGGAGGCGTACTCCACACAGGACGAGGAGGATATGGCGATC
AAGGAGGTGACGGCCATCAGCATCAGCCAGGGCAGTGCAGGTGCTCGGGG
AGGCGTACTCCACACAGGACGAGGAGGATATGGCGATCAAGGAGGTGACG
GCCATCAGCATCAGCCAGGGCAGTGCAGGACTGTAATGAACATCAACCTG
GCCAAGGCTGGCAACTGGGTGCTCTTGGAGGGCGTCGACGCCTCCATCCA
CAAGACGGCCGACTGTAATGAACATCAACCTGGCCAAGGCTGGCAACTGG
GTGCTCTTGGAGGGCGTCGACGCCTCCATCCACAAGACGGCC
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