mRNA_H-elongata_contig60938.13634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60938.13634.1
Unique NamemRNA_H-elongata_contig60938.13634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 4.150e-52
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:   16 NQAATTTATSMSSMDGMVGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            ++A++ T  SMS++DG VGVS EAGG VFDPLGLAELH+INP VNPHPKWL+E+EIKHCRICMLAFVGI AAQ+G  FPGL Y+AVPWYDQF EF SKNPGGLAQ+
Sbjct:   32 SKASSKTPLSMSAVDGEVGVSLEAGGAVFDPLGLAELHSINPLVNPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQL 137
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.950e-25
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   67 VGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            +G   E G + +DP+G ++++ +N   +NPHP+WL+ESEIKH R  MLAFVG +   AGIH PGL Y    WY+ F EF +KNP GLAQV
Sbjct:    6 LGAGVETGNEPWDPMGFSQMYKVNSLGINPHPQWLQESEIKHGRTAMLAFVGTLVIHAGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQV 94
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI)

HSP 1 Score: 93.2 bits (230), Expect = 6.860e-22
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  145 VNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            +NPHP+WL+ESEIKH RICMLAFVG +   AGIH P L Y +  WY+ F EFV+KNP GLAQV
Sbjct:    4 INPHPQWLQESEIKHGRICMLAFVGTLVIHAGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQV 65
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A8J5XJ42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ42_DIALT)

HSP 1 Score: 93.2 bits (230), Expect = 2.480e-21
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:   52 SMDGMVGVSNEAGGKVFDPLGLAELHTI----NPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            S+  + G S E GGK +DPLG A+L+ +     P  NP  KWLRE+E+KHCR+ MLAF+G      G H PG A+    W+     F ++NPGG AQ+
Sbjct:   27 SLSDLPGASIELGGKPWDPLGFAKLNALPTGSGPASNPSLKWLREAEVKHCRVAMLAFLGTAFQTFGPHLPGAAFSEPDWFKASYTFSAQNPGGAAQI 124
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.660e-19
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   55 MDGMVGVSNEAGGKVFDPLGLAELHTI----NPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPG----LAYEAVPWYDQFGEFVSKNPGGLAQV 333
            +D MVGV  E+G KV+DP+    +  +    +  V P  KWLRE+EIKH R+CMLAFVG   A  G+ FPG      YEA  WYD     +S N  G+AQ+
Sbjct:   51 LDSMVGVGPESGNKVWDPMSFGSVSKVIAGEHSTVMPDVKWLREAEIKHGRVCMLAFVGTCFAANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQL 151
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A6V1SPG2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SPG2_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 3.640e-18
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   55 MDGMVGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            ++ MVG   E G K +DPL L++L  ++   NPH  WLRESE+KH R+ MLA VG+ A   G   PG   E   W   +GE + KNP    Q+
Sbjct:   36 LEDMVGAGVETGNKPWDPLNLSKLSDVSQN-NPHVNWLRESELKHGRVAMLASVGVFATSIGARIPGYPVETKDWTAAYGEMIEKNPLAFVQI 127
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S0PWE2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PWE2_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.720e-15
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   67 VGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            VG S E G K +DP  L EL  ++   NP   WLRE+E+KH R+ MLAF G++A   G+H PG  +    W    G    KN GG+ Q+
Sbjct:   61 VGSSVELGDKPWDPWSLTELWKVSAN-NPDVAWLREAELKHGRLSMLAFAGVLATNGGLHLPGEFWTDSDWTTALGSTFGKNSGGMTQI 148
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A7S0NXV2_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXV2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 5.550e-15
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   67 VGVSNEAGGKVFDPLGLAELHTINPYVNPHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEFVSKNPGGLAQV 333
            VG S E G   +DP  L EL  ++   NP   WLRE+E+KH R+ MLAF GI+A   G+H PG  +    W    G   +KNP G+ Q+
Sbjct:   65 VGASVEFGDAPWDPWSLTELWKVSAN-NPDVAWLREAELKHGRLSMLAFAGILATNGGLHLPGEFWTDSDWTSALGSTFAKNPSGMLQI 152
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC)

HSP 1 Score: 75.9 bits (185), Expect = 1.080e-14
Identity = 44/96 (45.83%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:   55 MDGMVGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVG-IVAAQAGIHFPGLAYEAVPWYDQ-FGEFVSKNPGGLAQV 333
            ++G VG   E GGK +DPLG A +   N   +NPH KWL+ESEIKH R  MLAF+G IV    G++ P   Y   P + Q F + +  NP G+AQ+
Sbjct:   17 LEGQVGYDVETGGKPWDPLGFAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVP--TYPQEPDFTQAFYKALQNNPLGMAQI 110
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BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Match: A0A4D9CZC1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZC1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.690e-14
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   55 MDGMVGVSNEAGGKVFDPLGLAELHTINPY-VNPHPKWLRESEIKHCRICMLAFVG-IVAAQAGIHFPGLAYEAVPWYDQ-FGEFVSKNPGGLA 327
            ++G VG   E GGK +DPLGLA +   N   +NPH KWL+ESEIKH R  MLAF+G IV    G++ P   Y   P + Q F + +  NP G+A
Sbjct:   33 LEGQVGYDVETGGKPWDPLGLAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVP--TYPQEPDFTQAFYKALQNNPLGMA 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60938.13634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D5_ECTSI4.150e-5276.42Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CLY0_9STRA4.950e-2552.22Light harvesting complex protein 2 n=1 Tax=Tribone... [more]
Q9ATC4_VAULI6.860e-2266.67Light harvesting complex protein 2 (Fragment) n=4 ... [more]
A0A8J5XJ42_DIALT2.480e-2144.90Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2BU75_9STRA7.660e-1945.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6V1SPG2_HETAK3.640e-1843.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0PWE2_9EUKA3.720e-1542.70Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0NXV2_9EUKA5.550e-1542.70Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
I2CR44_NANGC1.080e-1445.83Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZC1_9STRA7.690e-1446.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60938contigH-elongata_contig60938:937..3499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue9.8e-42
Seed eggNOG ortholog2880.D7G0D5
EggNOG free text desc.light harvesting protein
EggNOG OGs2CDPH@1,2SBCH@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-02_000850.1
Exons3
Model size339
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60938.13634.1prot_H-elongata_contig60938.13634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60938 937..3499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930984.2435954-CDS-H-elongata_contig60938:936..10491622930984.2435954-CDS-H-elongata_contig60938:936..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 937..1049 -
1691679650.8196115-CDS-H-elongata_contig60938:936..10491691679650.8196115-CDS-H-elongata_contig60938:936..1049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 937..1049 -
1622930984.2582636-CDS-H-elongata_contig60938:1604..16681622930984.2582636-CDS-H-elongata_contig60938:1604..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 1605..1668 -
1691679650.8291366-CDS-H-elongata_contig60938:1604..16681691679650.8291366-CDS-H-elongata_contig60938:1604..1668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 1605..1668 -
1622930984.2715876-CDS-H-elongata_contig60938:3337..34991622930984.2715876-CDS-H-elongata_contig60938:3337..3499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 3338..3499 -
1691679650.8373666-CDS-H-elongata_contig60938:3337..34991691679650.8373666-CDS-H-elongata_contig60938:3337..3499Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60938 3338..3499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60938.13634.1

>prot_H-elongata_contig60938.13634.1 ID=prot_H-elongata_contig60938.13634.1|Name=mRNA_H-elongata_contig60938.13634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MCIVQNQAATTTATSMSSMDGMVGVSNEAGGKVFDPLGLAELHTINPYVN
PHPKWLRESEIKHCRICMLAFVGIVAAQAGIHFPGLAYEAVPWYDQFGEF
VSKNPGGLAQVH*
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mRNA from alignment at H-elongata_contig60938:937..3499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60938.13634.1 ID=mRNA_H-elongata_contig60938.13634.1|Name=mRNA_H-elongata_contig60938.13634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2563bp|location=Sequence derived from alignment at H-elongata_contig60938:937..3499- (Himanthalia elongata Himel1 dioecious)
ATGTGCATTGTTCAAAATCAGGCGGCTACGACGACGGCTACCTCCATGAG
CTCCATGGATGGGATGGTCGGCGTCTCCAACGAGGCCGGGGGCAAGGTTT
TCGACCCCCTTGGCCTGGCGGAGCTACACACGATCAACCCTTACGTGAAC
CCTCACCCGAAGGTGCGGCTTCCTGAGAATAGCGCGATACATTACATTGC
GGCAAAAACGATTTTCGGAATACTGCTAGTAGGGAAGGTATACAGAGCAG
TAGCCTAGCAGTATAGTCTATGGTCATTGTTTATAATTTTTTAGATATTG
TAGTGCTTAACTATTCGCCCAATTTGGGCTGTATCAAGACCAGTCCCAAA
TATATGCTACAGGCGCGCGCGTGTACACGCACACACACACAAGTGATCCG
CCATTAAGAAGATCAATGCATGTAGCCTAAAATAACTAGTATATCATAAC
AGGGCCGGATTGCGCGCACACACATACTTCAGAGAACCCGAAGGTGTTTT
CCGATATTTGGGGCGCTCAGAGTCGGGGGTGCAGAGGAAGATATTCCTTG
ACTTCACACGACCCGGTGGCTTTGCAACGTACTTGACAGCAGTTTCAGCT
GTGAGGGAATAATGCTGTGAAGGGGTGGCTAGTTAGCGGGGGGGGGGCTC
CCTCTGTGGACATAAAGCATGTCCACTCTCGGCTTCCCTGGCGAAACTAA
GGGGGATTACCATATAAGGGTAGTCGGCAGGAGACCTGCCAAAACGTTTC
CCCTTTTTGGTCGAAATTTGCAAGGGGTAATATCCTTTTCTTGCCCGGAA
GTCATGAAGGTGTACCCTTTTGGACGACATACGACAGCAGGTTAACCCTT
TGGGGGGGGAGGGAGAAATTCGTCATGGTATACCCCTTCAAAACAAAATT
AATTAAGGCATGTACCCGTTTTGGTAATCCTCGCAAAAAACAAAAATGCG
CATGTATACCACGTGGACACTTTTTTTCTATCGAGACTACTAGGATCAAT
GACCCTTGAAAGCATAACACCGGCTGTGTCTCGTCGTGACACGATGTGAT
ATGCCGGCACCGGTCAGGCTCTCGCACAAAGAGCCGTGACTGCGGTGGAC
TGTTTTCATATCAAGCTGTGGCGTGACATATCAAATCTAGTATGTCCTCT
AAGAACAGTAGAGGAAGGCACCGAAGACCACCAAACGTGAAACGTGTTTT
CCCGCAGATATATATATTCACACTCGAGACCCTGCCGTAGGGCTCCAGTG
CTGCACGTCAAGAAGCCCTATTTCGGCGCTCTAATGTTTTTGCCCTCCCG
AAAAGCAACAGTCCGTGAGCCTTTCTTTCCGGTGATTCAGCCGGCGCGCG
AAAGGTCCCTACGTTTTCGGTCGAAAATACGGTGTCCAGCGCGAAGCTTA
AGGTTTTCTTTTTCAGCACCTATAGCAAGGAAAAATCCGATAAAAATCTA
GAGAGCCCTTGTGTTGGTCATAGCCAGTCAAAAGGTATGCCACGATGCGG
TAGCCCTCTCCCCAGCCCAGTACGGTAGGGTAGGGTAGCGGAACCACCGA
AAAAAACGAAAGCGTTTGGGAACCACCTCTCCTAGGCCTCTCTTCTTACG
TGCCTAAGCTTCCAAATCCGATTTGGTTCGGTCCGATTAGATTCGATTCG
ATTCGATTGCACCAGCGTGAACAAACAGCCCTCGGAAAAGTGCAAGCGTA
TGCCGCGTCGTCGTTTTTTGGACATTTAGTTGATGTTATGGGTTTGGGTA
TCGGGGCAAAGCGGTAAATGGCATTTTTCCCTCAAACAGTCATGCTCTCT
CCCCCCCCCCCCCCCCCCCCGATTAACGCAGTGGTTGCGGGAGTCGGAGA
TCAAGCACTGCCGCATTTGCATGTTGGCGTTCGTGGGCATCGTGGGTGAG
TGTTACAACACATGAATGGACGAGTAGTTTGGTTTCTTCCACAGCAGCAG
GGGTTCCATACAGTAATCAGGCATGTTGATCGGGAGGAGGGGGGAAAGGG
TTATCCGAAACACATCCAAAATACCGAAAACATAATCTAAAGGTTCGAAC
GGGACCAGGGAAATTAGTTTTCCCTTTTCATCAATTTGCATTAAACCGCA
CAAACCGGCATGACACGTAAGGGGGCGCCAAGCCGGTTTGCAAATACTCC
CCCCTTATGGAGAGCTATCCCTGGAGACGTTGGATTGGCATATCCTACTC
GCGTTGCTTACGCAACCGCGCCGGACTACCGCTACAGCCTGTTAAACTGA
TTGACCCATACTCTGCTATACCCCGACTCTCTGCCTCTCCTACTAATCGT
TTCGTGCTCCAAAGATGGTAAATTATCTAGGAGACCGACCGAAGCCCGCG
AGGCGTAATCGGCACTTGTCGTGTGTTGTACGAGTGTAATGATAAAATAA
CATGCCCCACGTCCCGCCGCGTGTGCTTGCGTGCGCTCGTGAAATTGCAG
CTGCTCAGGCGGGGATTCACTTCCCGGGCTTGGCCTACGAGGCGGTGCCG
TGGTATGATCAGTTTGGCGAGTTCGTGTCCAAGAACCCCGGGGGGCTTGC
TCAGGTACACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig60938:937..3499-

>mRNA_H-elongata_contig60938.13634.1 ID=mRNA_H-elongata_contig60938.13634.1|Name=mRNA_H-elongata_contig60938.13634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig60938:937..3499- (Himanthalia elongata Himel1 dioecious)
ATGTGCATTGTTCAAAATCAGGCGGCTACGACGACGGCTACCTCCATGAG
CTCCATGGATGGGATGGTCGGCGTCTCCAACGAGGCCGGGGGCAAGGTTT
TCGACCCCCTTGGCCTGGCGGAGCTACACACGATCAACCCTTACGTGAAC
CCTCACCCGAAGATGTGCATTGTTCAAAATCAGGCGGCTACGACGACGGC
TACCTCCATGAGCTCCATGGATGGGATGGTCGGCGTCTCCAACGAGGCCG
GGGGCAAGGTTTTCGACCCCCTTGGCCTGGCGGAGCTACACACGATCAAC
CCTTACGTGAACCCTCACCCGAAGTGGTTGCGGGAGTCGGAGATCAAGCA
CTGCCGCATTTGCATGTTGGCGTTCGTGGGCATCGTGGTGGTTGCGGGAG
TCGGAGATCAAGCACTGCCGCATTTGCATGTTGGCGTTCGTGGGCATCGT
GGCTGCTCAGGCGGGGATTCACTTCCCGGGCTTGGCCTACGAGGCGGTGC
CGTGGTATGATCAGTTTGGCGAGTTCGTGTCCAAGAACCCCGGGGGGCTT
GCTCAGGTACACTAACTGCTCAGGCGGGGATTCACTTCCCGGGCTTGGCC
TACGAGGCGGTGCCGTGGTATGATCAGTTTGGCGAGTTCGTGTCCAAGAA
CCCCGGGGGGCTTGCTCAGGTACACTAA
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