mRNA_H-elongata_contig60845.13625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60845.13625.1
Unique NamemRNA_H-elongata_contig60845.13625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.200e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:  116 RSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTSAV 280
            R+  NRSDCSNIADNP+H T PDKLV  + VVETRLAKYVA+S LTRDLLDTSAV
Sbjct: 1923 RTAANRSDCSNIADNPIHDTVPDKLVGTRLVVETRLAKYVAVSMLTRDLLDTSAV 1977
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A6H5JBJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.020e-14
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:  137 DCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTSAV 280
            DCSNIADNP+H T PDKLV  + VVETRLAKYVA+S LTRDLLDTSAV
Sbjct: 2000 DCSNIADNPIHDTVPDKLVGTRLVVETRLAKYVAVSMLTRDLLDTSAV 2047
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A7S4DA20_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA20_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 3.330e-13
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:  107 LIFRSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTS 274
            L+  ++ +R+DC+N+ADNP+H   PDKL+ I TVVETR AKYVA+SRLT D LDTS
Sbjct:  333 LVNLNLTDRADCANVADNPLHAALPDKLIGIHTVVETRRAKYVAVSRLTDDFLDTS 388
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: B5YLR0_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLR0_THAPS)

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-10
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:  107 LIFRSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTSAV 280
            L  R   NR +CSNI DNP+H T PDK +  + V+E R +KYVA+SRLT D LDTS V
Sbjct: 1752 LPLREAPNRGNCSNIVDNPIHPTLPDKRIGPEVVMEQRRSKYVAVSRLTDDYLDTSGV 1809
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.670e-10
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  128 NRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTS-AVRA 286
            +R +CSNIADNPVH TPPD L     VV+ RLA+Y A++RLT DLLDT  AVRA
Sbjct: 1992 DRGNCSNIADNPVHATPPDALAAGLRVVQRRLARYAAVTRLTADLLDTDGAVRA 2045
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: F0YFP0_AURAN (MFS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP0_AURAN)

HSP 1 Score: 67.8 bits (164), Expect = 9.160e-10
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 2 
Query:  116 RSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTS 274
            R  V+R +CSNI DNP+H T PD+LV    +VETR AKYVA+S LT DLLDT+
Sbjct: 2614 RDQVDRGNCSNIEDNPMHPTMPDELVGELYIVETRRAKYVAVSTLTPDLLDTT 2666
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A7S4T1F0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T1F0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-9
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  128 NRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTSAV 280
            +RS CSNI DNPVH T PD L+    VVE R AK++AISRLT D LDT+ +
Sbjct:  242 DRSSCSNIVDNPVHNTGPDMLIGPDQVVERRRAKFIAISRLTYDYLDTNGI 292
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A7S2WVY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVY2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.750e-9
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 2 
Query:  116 RSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTS 274
            R   +R +CS IADNP+H T PD LV  + V ETR +K+VA+S LT D LDTS
Sbjct:   53 RPPADRENCSGIADNPIHDTLPDLLVGPEAVAETRRSKFVAVSLLTDDFLDTS 105
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A8J2SVR8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVR8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.560e-8
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:  116 RSVVNRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTSA 277
            R + +R +CSNI DNP+H T PD+LV    VVE R AK+VA+S LT DLLDT++
Sbjct: 2220 RELQDRGNCSNIEDNPLHPTMPDELVKELYVVERRRAKFVAVSALTPDLLDTTS 2273
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BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Match: A0A7S3MGQ4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGQ4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.880e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:  128 NRSDCSNIADNPVHGTPPDKLVDIQTVVETRLAKYVAISRLTRDLLDTS 274
            +R  CSNIADNP+H T  DKL+ +  V+ TR AK++A+S LT D LDT+
Sbjct:   70 DRGTCSNIADNPIHATFQDKLIGLTKVITTRRAKFIALSALTFDFLDTT 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60845.13625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LIJ2_ECTSI3.200e-1778.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ3_9PHAE2.020e-1481.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DA20_HETAK3.330e-1362.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B5YLR0_THAPS2.610e-1056.90Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A835YHE6_9STRA2.670e-1064.812Fe-2S ferredoxin-type domain-containing protein n... [more]
F0YFP0_AURAN9.160e-1062.26MFS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S4T1F0_9STRA1.580e-960.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2WVY2_9STRA3.750e-956.60Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J2SVR8_9STRA2.560e-857.41Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3MGQ4_9STRA3.880e-855.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60845contigH-elongata_contig60845:170..753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.0926964-CDS-H-elongata_contig60845:169..4901622930983.0926964-CDS-H-elongata_contig60845:169..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60845 170..490 +
1691679650.2730937-CDS-H-elongata_contig60845:169..4901691679650.2730937-CDS-H-elongata_contig60845:169..490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60845 170..490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.1095512-UTR-H-elongata_contig60845:490..7531622930983.1095512-UTR-H-elongata_contig60845:490..753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60845 491..753 +
1691679650.2817006-UTR-H-elongata_contig60845:490..7531691679650.2817006-UTR-H-elongata_contig60845:490..753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60845 491..753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60845.13625.1prot_H-elongata_contig60845.13625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60845 170..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60845.13625.1

>prot_H-elongata_contig60845.13625.1 ID=prot_H-elongata_contig60845.13625.1|Name=mRNA_H-elongata_contig60845.13625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MDSTKPLLLLGHYLKRGNKGPIIITVSLISLNPRCFDLQIGGEPKRLFEH
RRQPCPRHAAGQAGGYPNGGRNPPGEVRGHFSSNARPPGHQRREGTSPLF
IYFYFL*
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mRNA from alignment at H-elongata_contig60845:170..753+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60845.13625.1 ID=mRNA_H-elongata_contig60845.13625.1|Name=mRNA_H-elongata_contig60845.13625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=584bp|location=Sequence derived from alignment at H-elongata_contig60845:170..753+ (Himanthalia elongata Himel1 dioecious)
ATGGACTCTACAAAACCGCTTCTTCTTCTAGGTCATTACCTAAAGCGGGG
GAATAAGGGGCCAATCATCATAACAGTTTCACTTATCTCTCTGAACCCGC
GCTGTTTTGATCTTCAGATCGGTGGTGAACCGAAGCGACTGTTCGAACAT
CGCAGACAACCCTGTCCACGGCACGCCGCCGGACAAGCTGGTGGATATCC
AAACGGTGGTAGAAACCCGCCTGGCGAAGTACGTGGCCATTTCTCGTCTA
ACGCGAGACCTCCTGGACACCAGCGCCGTGAGGGCACGAGTCCATTATTT
ATTTATTTTTACTTTCTCTAGATAAAAAGCTAGCGATATAATATTTTATG
CTGTATTTTTTTTAATGTTTTTTCCCTCCTATACTTGATTTCATTCCAAC
CCTCCGAACATCCACACCTTCTTAGCACCGTGAGAGGTGCAGTCCAGGGG
ACCAACTATCATCAGGTCCGAGTGTGTACATTACTACCTTTCCCCCCTTT
TTGACAGCTTGGAAAGGCAGGTCGATGCGGCCAATGCGCAGTCAACGATT
TCCTCTCGACGTTACCACATGGATGAAGCCAACG
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Coding sequence (CDS) from alignment at H-elongata_contig60845:170..753+

>mRNA_H-elongata_contig60845.13625.1 ID=mRNA_H-elongata_contig60845.13625.1|Name=mRNA_H-elongata_contig60845.13625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60845:170..753+ (Himanthalia elongata Himel1 dioecious)
ATGGACTCTACAAAACCGCTTCTTCTTCTAGGTCATTACCTAAAGCGGGG
GAATAAGGGGCCAATCATCATAACAGTTTCACTTATCTCTCTGAACCCGC
GCTGTTTTGATCTTCAGATCGGTGGTGAACCGAAGCGACTGTTCGAACAT
CGCAGACAACCCTGTCCACGGCACGCCGCCGGACAAGCTGGTGGATATCC
AAACGGTGGTAGAAACCCGCCTGGCGAAGTACGTGGCCATTTCTCGTCTA
ACGCGAGACCTCCTGGACACCAGCGCCGTGAGGGCACGAGTCCATTATTT
ATTTATTTTTACTTTCTCTAGATGGACTCTACAAAACCGCTTCTTCTTCT
AGGTCATTACCTAAAGCGGGGGAATAAGGGGCCAATCATCATAACAGTTT
CACTTATCTCTCTGAACCCGCGCTGTTTTGATCTTCAGATCGGTGGTGAA
CCGAAGCGACTGTTCGAACATCGCAGACAACCCTGTCCACGGCACGCCGC
CGGACAAGCTGGTGGATATCCAAACGGTGGTAGAAACCCGCCTGGCGAAG
TACGTGGCCATTTCTCGTCTAACGCGAGACCTCCTGGACACCAGCGCCGT
GAGGGCACGAGTCCATTATTTATTTATTTTTACTTTCTCTAG
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