mRNA_H-elongata_contig60837.13624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig60837.13624.1
Unique Name	mRNA_H-elongata_contig60837.13624.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: D8LRT8_ECTSI (Phosphoglycerate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRT8_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.520e-62
Identity = 102/116 (87.93%), Postives = 108/116 (93.10%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V A DIPDGWMGLDIGT+AV EFKQEIS+A TIVWNGPLGVFEWDAFA GTNE+AKALA  TA+GG TIVGGGDCVAAVEKAGVASQI+HISTGGGASLELLEGKELPG+AALDDA
Sbjct:  312 VDAKDIPDGWMGLDIGTSAVDEFKQEISQANTIVWNGPLGVFEWDAFANGTNELAKALATRTAEGGITIVGGGDCVAAVEKAGVASQISHISTGGGASLELLEGKELPGIAALDDA 427

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: O65080_PICMA (Phosphoglycerate kinase (Fragment) n=3 Tax=cellular organisms TaxID=131567 RepID=O65080_PICMA)

HSP 1 Score: 159 bits (401), Expect = 9.690e-48
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPASDIPDGWMGLDIG  ++  F + +   KT++WNGP+GVFE+D F++GT  IAK LA  +  G TTI+GGGD VAAVEK GVA +++HISTGGGASLELLEGK LPGV ALD+A
Sbjct:   31 VPASDIPDGWMGLDIGADSIKTFSEALDTTKTVIWNGPMGVFEFDKFSLGTTSIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKTLPGVLALDEA 146

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A072TEE4_MEDTR (Phosphoglycerate kinase n=12 Tax=Pentapetalae TaxID=1437201 RepID=A0A072TEE4_MEDTR)

HSP 1 Score: 157 bits (398), Expect = 2.640e-46
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F + + K++TI+WNGP+GVFE+D FA GT  IAK LA  +  G TTI+GGGD VAAVEK G+A +++HISTGGGASLELLEGK LPGV ALDDA
Sbjct:  111 VPASSIPDGWMGLDIGPDSIKTFNEALDKSQTIIWNGPMGVFEFDKFAAGTEAIAKKLAEVSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 226

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: I3T8P4_LOTJA (Phosphoglycerate kinase n=2 Tax=cellular organisms TaxID=131567 RepID=I3T8P4_LOTJA)

HSP 1 Score: 156 bits (394), Expect = 2.820e-46
Identity = 78/116 (67.24%), Postives = 92/116 (79.31%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VP+S IPDGWMGLDIG  ++  F   +   +TI+WNGP+GVFE+D FA+GT  IAK LA  +  G TTI+GGGD VAAVEK GVAS ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:   61 VPSSAIPDGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEA 176

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A1E5QKA1_9CYAN (Phosphoglycerate kinase n=3 Tax=Desertifilum TaxID=1185872 RepID=A0A1E5QKA1_9CYAN)

HSP 1 Score: 162 bits (409), Expect = 4.660e-46
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V   +IPDGWMGLDIG  +V  F+QE+S  K+++WNGP+GVFE+D FA+GT  IA++LA  T  G TTI+GGGD VAAVEK GVA Q++HISTGGGASLELLEGKELPG+AALD+A
Sbjct:  285 VSVENIPDGWMGLDIGPDSVKMFQQELSDCKSVIWNGPMGVFEFDKFAVGTEAIARSLADLTKQGTTTIIGGGDSVAAVEKVGVAEQMSHISTGGGASLELLEGKELPGIAALDEA 400

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A6L9HMI2_9CLOT (Phosphoglycerate kinase (Fragment) n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A6L9HMI2_9CLOT)

HSP 1 Score: 154 bits (390), Expect = 5.840e-46
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F   +   KT++WNGP+GVFE+D FA GT+ +AK LA  +  G TTI+GGGD VAAVEK GVAS ++HISTGGGASLELLEGK LPGV ALD+A
Sbjct:   39 VPASAIPDGWMGLDIGPDSIKTFNAALETTKTVIWNGPMGVFEFDKFAAGTDSVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKALPGVLALDEA 154

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A6A6M9Z0_HEVBR (Phosphoglycerate kinase n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M9Z0_HEVBR)

HSP 1 Score: 157 bits (396), Expect = 8.360e-46
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F   +   KT++WNGP+GVFE+D FA+GT  IAK LA  +  G TTI+GGGD VAAVEK GVA  ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:  122 VPASAIPDGWMGLDIGPESIKTFSDALETTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEA 237

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: UPI0007398BDD (Phosphoglycerate kinase n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0007398BDD)

HSP 1 Score: 160 bits (406), Expect = 1.300e-45
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V   +IPDGWMGLDIG  +V  F+QE++  KT+VWNGP+GVFE+D FA+GT  IA+ LA+ T  G TTI+GGGD VAAVEK GVA++++HISTGGGASLELLEGK LPG+AALDDA
Sbjct:  285 VSVENIPDGWMGLDIGPESVKLFQQELADCKTVVWNGPMGVFEFDKFAVGTEAIARTLASLTKTGTTTIIGGGDSVAAVEKVGVAAEMSHISTGGGASLELLEGKVLPGIAALDDA 400

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: F2CQV1_HORVV (Phosphoglycerate kinase n=4 Tax=BOP clade TaxID=359160 RepID=F2CQV1_HORVV)

HSP 1 Score: 160 bits (406), Expect = 1.330e-45
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++ +F + +   KT++WNGP+GVFE++ FA GT+ IAK LA  TA G TTI+GGGD VAAVEKAG+AS+++HISTGGGASLELLEGK LPGV ALDDA
Sbjct:  286 VPASAIPDGWMGLDIGPDSIRKFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAQGVTTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKTLPGVLALDDA 401

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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: UPI001F5F4326 (phosphoglycerate kinase, chloroplastic n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F4326)

HSP 1 Score: 159 bits (402), Expect = 1.430e-45
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1

Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  +V  F + +   KTI+WNGP+GVFE+D FA+GT  IAK LA  + +G TTI+GGGD VAAVEK GVA+ ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:  223 VPASAIPDGWMGLDIGPDSVKSFSEALDTTKTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSQNGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEA 338

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot

BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRT8_ECTSI	9.520e-62	87.93	Phosphoglycerate kinase n=2 Tax=Ectocarpus TaxID=2...	[more]
O65080_PICMA	9.690e-48	66.38	Phosphoglycerate kinase (Fragment) n=3 Tax=cellula...	[more]
A0A072TEE4_MEDTR	2.640e-46	67.24	Phosphoglycerate kinase n=12 Tax=Pentapetalae TaxI...	[more]
I3T8P4_LOTJA	2.820e-46	67.24	Phosphoglycerate kinase n=2 Tax=cellular organisms...	[more]
A0A1E5QKA1_9CYAN	4.660e-46	68.10	Phosphoglycerate kinase n=3 Tax=Desertifilum TaxID...	[more]
A0A6L9HMI2_9CLOT	5.840e-46	66.38	Phosphoglycerate kinase (Fragment) n=1 Tax=Clostri...	[more]
A0A6A6M9Z0_HEVBR	8.360e-46	67.24	Phosphoglycerate kinase n=1 Tax=Hevea brasiliensis...	[more]
UPI0007398BDD	1.300e-45	68.10	Phosphoglycerate kinase n=1 Tax=Synechococcales cy...	[more]
F2CQV1_HORVV	1.330e-45	68.97	Phosphoglycerate kinase n=4 Tax=BOP clade TaxID=35...	[more]
UPI001F5F4326	1.430e-45	68.97	phosphoglycerate kinase, chloroplastic n=1 Tax=Vig...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig60837	contig	H-elongata_contig60837:3047..3397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	186.0
Seed ortholog evalue	8.9e-45
Seed eggNOG ortholog	2880.D8LRT8
Preferred name	PGK1
KEGG rclass	RC00002,RC00043
KEGG ko	ko:K00927
KEGG Reaction	R01512
KEGG Pathway	ko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.	phosphoglycerate kinase activity
EggNOG OGs	COG0126@1,KOG1367@2759
EC	2.7.2.3
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting category	other localisation
Exons	1
Model size	351
Cds size	321
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930983.005596-CDS-H-elongata_contig60837:3046..3367	1622930983.005596-CDS-H-elongata_contig60837:3046..3367	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig60837 3047..3367 -
1691679650.2437367-CDS-H-elongata_contig60837:3046..3367	1691679650.2437367-CDS-H-elongata_contig60837:3046..3367	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig60837 3047..3367 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930983.0335326-UTR-H-elongata_contig60837:3367..3397	1622930983.0335326-UTR-H-elongata_contig60837:3367..3397	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig60837 3368..3397 -
1691679650.2557576-UTR-H-elongata_contig60837:3367..3397	1691679650.2557576-UTR-H-elongata_contig60837:3367..3397	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig60837 3368..3397 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig60837.13624.1	prot_H-elongata_contig60837.13624.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig60837 3047..3367 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig60837:3047..3397-
coding sequence from alignment at H-elongata_contig60837:3047..3397-

protein sequence of mRNA_H-elongata_contig60837.13624.1

>prot_H-elongata_contig60837.13624.1 ID=prot_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAA
NTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGV
AALDDA*

mRNA from alignment at H-elongata_contig60837:3047..3397-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig60837.13624.1 ID=mRNA_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig60837:3047..3397- (Himanthalia elongata Himel1 dioecious)
GTTCCTGCCAGTGATATCCCCGATGGTTGGATGGGCCTTGACATCGGAAC
GACAGCCGTGAGTGAATTCAAGCAAGAGATTTCCAAAGCAAAAACGATAG
TTTGGAACGGACCGCTGGGAGTTTTTGAATGGGATGCATTCGCGATCGGG
ACAAACGAGATCGCGAAAGCGTTAGCTGCGAACACTGCGGACGGGGGTAC
CACCATCGTTGGTGGTGGTGATTGTGTTGCCGCCGTAGAGAAGGCCGGTG
TTGCAAGTCAGATCACTCACATCTCGACCGGCGGAGGGGCGAGCTTAGAG
CTTCTTGAAGGCAAAGAGCTTCCGGGCGTAGCGGCTTTGGACGATGCGTA
A

Coding sequence (CDS) from alignment at H-elongata_contig60837:3047..3397-

>mRNA_H-elongata_contig60837.13624.1 ID=mRNA_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60837:3047..3397- (Himanthalia elongata Himel1 dioecious)
ATGGGCCTTGACATCGGAACGACAGCCGTGAGTGAATTCAAGCAAGAGAT
TTCCAAAGCAAAAACGATAGTTTGGAACGGACCGCTGGGAGTTTTTGAAT
GGGATGCATTCGCGATCGGGACAAACGAGATCGCGAAAGCGTTAGCTGCG
AACACTGCGGACGGGGGTACCACCATCGTTGGTGGTGGTGATTGTGTTGC
CGCCGTAGAGAAGGCCGGTGTTGCAAGTCAGATCACTCACATCTCGACCG
GCGGAGGGGCGAGCTTAGAGCTTCTTGAAGGCAAAGAGCTTCCGGGCGTA
GCGGCTTTGGACGATGCGTAAATGGGCCTTGACATCGGAACGACAGCCGT
GAGTGAATTCAAGCAAGAGATTTCCAAAGCAAAAACGATAGTTTGGAACG
GACCGCTGGGAGTTTTTGAATGGGATGCATTCGCGATCGGGACAAACGAG
ATCGCGAAAGCGTTAGCTGCGAACACTGCGGACGGGGGTACCACCATCGT
TGGTGGTGGTGATTGTGTTGCCGCCGTAGAGAAGGCCGGTGTTGCAAGTC
AGATCACTCACATCTCGACCGGCGGAGGGGCGAGCTTAGAGCTTCTTGAA
GGCAAAGAGCTTCCGGGCGTAGCGGCTTTGGACGATGCGTAA