mRNA_H-elongata_contig60837.13624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60837.13624.1
Unique NamemRNA_H-elongata_contig60837.13624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: D8LRT8_ECTSI (Phosphoglycerate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRT8_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 9.520e-62
Identity = 102/116 (87.93%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V A DIPDGWMGLDIGT+AV EFKQEIS+A TIVWNGPLGVFEWDAFA GTNE+AKALA  TA+GG TIVGGGDCVAAVEKAGVASQI+HISTGGGASLELLEGKELPG+AALDDA
Sbjct:  312 VDAKDIPDGWMGLDIGTSAVDEFKQEISQANTIVWNGPLGVFEWDAFANGTNELAKALATRTAEGGITIVGGGDCVAAVEKAGVASQISHISTGGGASLELLEGKELPGIAALDDA 427
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: O65080_PICMA (Phosphoglycerate kinase (Fragment) n=3 Tax=cellular organisms TaxID=131567 RepID=O65080_PICMA)

HSP 1 Score: 159 bits (401), Expect = 9.690e-48
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPASDIPDGWMGLDIG  ++  F + +   KT++WNGP+GVFE+D F++GT  IAK LA  +  G TTI+GGGD VAAVEK GVA +++HISTGGGASLELLEGK LPGV ALD+A
Sbjct:   31 VPASDIPDGWMGLDIGADSIKTFSEALDTTKTVIWNGPMGVFEFDKFSLGTTSIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKTLPGVLALDEA 146
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A072TEE4_MEDTR (Phosphoglycerate kinase n=12 Tax=Pentapetalae TaxID=1437201 RepID=A0A072TEE4_MEDTR)

HSP 1 Score: 157 bits (398), Expect = 2.640e-46
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F + + K++TI+WNGP+GVFE+D FA GT  IAK LA  +  G TTI+GGGD VAAVEK G+A +++HISTGGGASLELLEGK LPGV ALDDA
Sbjct:  111 VPASSIPDGWMGLDIGPDSIKTFNEALDKSQTIIWNGPMGVFEFDKFAAGTEAIAKKLAEVSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 226
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: I3T8P4_LOTJA (Phosphoglycerate kinase n=2 Tax=cellular organisms TaxID=131567 RepID=I3T8P4_LOTJA)

HSP 1 Score: 156 bits (394), Expect = 2.820e-46
Identity = 78/116 (67.24%), Postives = 92/116 (79.31%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VP+S IPDGWMGLDIG  ++  F   +   +TI+WNGP+GVFE+D FA+GT  IAK LA  +  G TTI+GGGD VAAVEK GVAS ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:   61 VPSSAIPDGWMGLDIGPDSIKSFSDALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEA 176
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A1E5QKA1_9CYAN (Phosphoglycerate kinase n=3 Tax=Desertifilum TaxID=1185872 RepID=A0A1E5QKA1_9CYAN)

HSP 1 Score: 162 bits (409), Expect = 4.660e-46
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V   +IPDGWMGLDIG  +V  F+QE+S  K+++WNGP+GVFE+D FA+GT  IA++LA  T  G TTI+GGGD VAAVEK GVA Q++HISTGGGASLELLEGKELPG+AALD+A
Sbjct:  285 VSVENIPDGWMGLDIGPDSVKMFQQELSDCKSVIWNGPMGVFEFDKFAVGTEAIARSLADLTKQGTTTIIGGGDSVAAVEKVGVAEQMSHISTGGGASLELLEGKELPGIAALDEA 400
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A6L9HMI2_9CLOT (Phosphoglycerate kinase (Fragment) n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A6L9HMI2_9CLOT)

HSP 1 Score: 154 bits (390), Expect = 5.840e-46
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F   +   KT++WNGP+GVFE+D FA GT+ +AK LA  +  G TTI+GGGD VAAVEK GVAS ++HISTGGGASLELLEGK LPGV ALD+A
Sbjct:   39 VPASAIPDGWMGLDIGPDSIKTFNAALETTKTVIWNGPMGVFEFDKFAAGTDSVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKALPGVLALDEA 154
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: A0A6A6M9Z0_HEVBR (Phosphoglycerate kinase n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6M9Z0_HEVBR)

HSP 1 Score: 157 bits (396), Expect = 8.360e-46
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++  F   +   KT++WNGP+GVFE+D FA+GT  IAK LA  +  G TTI+GGGD VAAVEK GVA  ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:  122 VPASAIPDGWMGLDIGPESIKTFSDALETTKTVIWNGPMGVFEFDKFAVGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEA 237
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: UPI0007398BDD (Phosphoglycerate kinase n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0007398BDD)

HSP 1 Score: 160 bits (406), Expect = 1.300e-45
Identity = 79/116 (68.10%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            V   +IPDGWMGLDIG  +V  F+QE++  KT+VWNGP+GVFE+D FA+GT  IA+ LA+ T  G TTI+GGGD VAAVEK GVA++++HISTGGGASLELLEGK LPG+AALDDA
Sbjct:  285 VSVENIPDGWMGLDIGPESVKLFQQELADCKTVVWNGPMGVFEFDKFAVGTEAIARTLASLTKTGTTTIIGGGDSVAAVEKVGVAAEMSHISTGGGASLELLEGKVLPGIAALDDA 400
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BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: F2CQV1_HORVV (Phosphoglycerate kinase n=4 Tax=BOP clade TaxID=359160 RepID=F2CQV1_HORVV)

HSP 1 Score: 160 bits (406), Expect = 1.330e-45
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  ++ +F + +   KT++WNGP+GVFE++ FA GT+ IAK LA  TA G TTI+GGGD VAAVEKAG+AS+++HISTGGGASLELLEGK LPGV ALDDA
Sbjct:  286 VPASAIPDGWMGLDIGPDSIRKFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAQGVTTIIGGGDSVAAVEKAGLASKMSHISTGGGASLELLEGKTLPGVLALDDA 401
[Close]
BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Match: UPI001F5F4326 (phosphoglycerate kinase, chloroplastic n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F4326)

HSP 1 Score: 159 bits (402), Expect = 1.430e-45
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:    1 VPASDIPDGWMGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAANTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGVAALDDA 348
            VPAS IPDGWMGLDIG  +V  F + +   KTI+WNGP+GVFE+D FA+GT  IAK LA  + +G TTI+GGGD VAAVEK GVA+ ++HISTGGGASLELLEGKELPGV ALD+A
Sbjct:  223 VPASAIPDGWMGLDIGPDSVKSFSEALDTTKTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSQNGVTTIIGGGDSVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVLALDEA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60837.13624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRT8_ECTSI9.520e-6287.93Phosphoglycerate kinase n=2 Tax=Ectocarpus TaxID=2... [more]
O65080_PICMA9.690e-4866.38Phosphoglycerate kinase (Fragment) n=3 Tax=cellula... [more]
A0A072TEE4_MEDTR2.640e-4667.24Phosphoglycerate kinase n=12 Tax=Pentapetalae TaxI... [more]
I3T8P4_LOTJA2.820e-4667.24Phosphoglycerate kinase n=2 Tax=cellular organisms... [more]
A0A1E5QKA1_9CYAN4.660e-4668.10Phosphoglycerate kinase n=3 Tax=Desertifilum TaxID... [more]
A0A6L9HMI2_9CLOT5.840e-4666.38Phosphoglycerate kinase (Fragment) n=1 Tax=Clostri... [more]
A0A6A6M9Z0_HEVBR8.360e-4667.24Phosphoglycerate kinase n=1 Tax=Hevea brasiliensis... [more]
UPI0007398BDD1.300e-4568.10Phosphoglycerate kinase n=1 Tax=Synechococcales cy... [more]
F2CQV1_HORVV1.330e-4568.97Phosphoglycerate kinase n=4 Tax=BOP clade TaxID=35... [more]
UPI001F5F43261.430e-4568.97phosphoglycerate kinase, chloroplastic n=1 Tax=Vig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60837contigH-elongata_contig60837:3047..3397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.9e-45
Seed eggNOG ortholog2880.D8LRT8
Preferred namePGK1
KEGG rclassRC00002,RC00043
KEGG koko:K00927
KEGG ReactionR01512
KEGG Pathwayko00010,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.phosphoglycerate kinase activity
EggNOG OGsCOG0126@1,KOG1367@2759
EC2.7.2.3
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.005596-CDS-H-elongata_contig60837:3046..33671622930983.005596-CDS-H-elongata_contig60837:3046..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60837 3047..3367 -
1691679650.2437367-CDS-H-elongata_contig60837:3046..33671691679650.2437367-CDS-H-elongata_contig60837:3046..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60837 3047..3367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930983.0335326-UTR-H-elongata_contig60837:3367..33971622930983.0335326-UTR-H-elongata_contig60837:3367..3397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60837 3368..3397 -
1691679650.2557576-UTR-H-elongata_contig60837:3367..33971691679650.2557576-UTR-H-elongata_contig60837:3367..3397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60837 3368..3397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60837.13624.1prot_H-elongata_contig60837.13624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60837 3047..3367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60837.13624.1

>prot_H-elongata_contig60837.13624.1 ID=prot_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MGLDIGTTAVSEFKQEISKAKTIVWNGPLGVFEWDAFAIGTNEIAKALAA
NTADGGTTIVGGGDCVAAVEKAGVASQITHISTGGGASLELLEGKELPGV
AALDDA*
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mRNA from alignment at H-elongata_contig60837:3047..3397-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60837.13624.1 ID=mRNA_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig60837:3047..3397- (Himanthalia elongata Himel1 dioecious)
GTTCCTGCCAGTGATATCCCCGATGGTTGGATGGGCCTTGACATCGGAAC
GACAGCCGTGAGTGAATTCAAGCAAGAGATTTCCAAAGCAAAAACGATAG
TTTGGAACGGACCGCTGGGAGTTTTTGAATGGGATGCATTCGCGATCGGG
ACAAACGAGATCGCGAAAGCGTTAGCTGCGAACACTGCGGACGGGGGTAC
CACCATCGTTGGTGGTGGTGATTGTGTTGCCGCCGTAGAGAAGGCCGGTG
TTGCAAGTCAGATCACTCACATCTCGACCGGCGGAGGGGCGAGCTTAGAG
CTTCTTGAAGGCAAAGAGCTTCCGGGCGTAGCGGCTTTGGACGATGCGTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig60837:3047..3397-

>mRNA_H-elongata_contig60837.13624.1 ID=mRNA_H-elongata_contig60837.13624.1|Name=mRNA_H-elongata_contig60837.13624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60837:3047..3397- (Himanthalia elongata Himel1 dioecious)
ATGGGCCTTGACATCGGAACGACAGCCGTGAGTGAATTCAAGCAAGAGAT
TTCCAAAGCAAAAACGATAGTTTGGAACGGACCGCTGGGAGTTTTTGAAT
GGGATGCATTCGCGATCGGGACAAACGAGATCGCGAAAGCGTTAGCTGCG
AACACTGCGGACGGGGGTACCACCATCGTTGGTGGTGGTGATTGTGTTGC
CGCCGTAGAGAAGGCCGGTGTTGCAAGTCAGATCACTCACATCTCGACCG
GCGGAGGGGCGAGCTTAGAGCTTCTTGAAGGCAAAGAGCTTCCGGGCGTA
GCGGCTTTGGACGATGCGTAAATGGGCCTTGACATCGGAACGACAGCCGT
GAGTGAATTCAAGCAAGAGATTTCCAAAGCAAAAACGATAGTTTGGAACG
GACCGCTGGGAGTTTTTGAATGGGATGCATTCGCGATCGGGACAAACGAG
ATCGCGAAAGCGTTAGCTGCGAACACTGCGGACGGGGGTACCACCATCGT
TGGTGGTGGTGATTGTGTTGCCGCCGTAGAGAAGGCCGGTGTTGCAAGTC
AGATCACTCACATCTCGACCGGCGGAGGGGCGAGCTTAGAGCTTCTTGAA
GGCAAAGAGCTTCCGGGCGTAGCGGCTTTGGACGATGCGTAA
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