mRNA_H-elongata_contig60837.13623.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A6H5KI28_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI28_9PHAE) HSP 1 Score: 292 bits (748), Expect = 2.850e-95 Identity = 148/248 (59.68%), Postives = 180/248 (72.58%), Query Frame = 3
Query: 147 MRSLEVLRRLHGQLAVATRSPWVWVVQGVHPDTVPPISHPRP-----SLRGEYVTPASLGYELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNLT 875
MRS RRL GQL+VAT SPWVWV GV P + HP P SLRGEYV+PAS +ELP PEVAF GRSN GKSTL+G+L+GN KLVR SKAPGCTKTVN+F +R+G +LVDLPGYGFAR++KRAVR W + V +YL+GR VL+RTFVLVD RHG+QP DE MLS L + V N VVLTKVDK +P LV+S+E + V HP+++P+VHC+SAHKG GM EF NT++ ++
Sbjct: 1 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASA---IHPPPRKRGLSLRGEYVSPASFNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESPQAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTLYGVS 245
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A835YYM3_9STRA (YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM3_9STRA) HSP 1 Score: 198 bits (504), Expect = 2.220e-58 Identity = 102/238 (42.86%), Postives = 149/238 (62.61%), Query Frame = 3
Query: 198 TRSPWVWVVQGVHPD-----TVPPISHPRPSLRGEYVTPASLGYELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTV-------RDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNLT 875
T+SPWVW ++G+ D T P I+ +++ + P ++LPK PEVAF GRSN GKSTL+G L+ N+KLVR SK PGCT+TVN+F + + +V +Y+VDLPGYGFA+ + V+ WT V ++ R +L+RTFVL+D RHG++ DE M+++LD+ V Q+VLTK D++T D+ +E V RA H + PVVH VSA G G+ + +T++ +T
Sbjct: 3 TKSPWVWTMKGMDADSAVHRTDPDIARGCRAMQAGFFPPNLFKFDLPKAGVPEVAFCGRSNVGKSTLVGTLINNTKLVRASKEPGCTRTVNYFGLTAPTRIKKGSEVDRAAVYMVDLPGYGFAKAPVQEVQAWTAAVEGFIVNRDCALLRRTFVLIDGRHGVKQHDEDMMTLLDDHGVSYQIVLTKADQLTKRDIAVVVEGVMRAAARHAACYPVVHVVSARDGHGVLQLLDTIYYVT 240
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A1I7NU75_9HYPH (Probable GTP-binding protein EngB n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NU75_9HYPH) HSP 1 Score: 172 bits (436), Expect = 1.050e-48 Identity = 89/188 (47.34%), Postives = 119/188 (63.30%), Query Frame = 3
Query: 318 LPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNLTKA 881
LP +PE+AFAGRSN GKS+LI LVG +L R S PG T+ +NFFT P DL+LVD+PGYGFA K V W K++ YL GR L R F+L+D+RHG++P D+ +L +LD A V QVVLTK DK+ P DL + +E +A+ HP++ P + S+ KGLG EE T+ L ++
Sbjct: 35 LPPDDRPEIAFAGRSNVGKSSLINALVGQLRLARASNTPGRTQELNFFTD-----PERDLFLVDMPGYGFAEAPKEKVAAWNKVIRAYLAGRR--TLLRVFLLIDARHGLKPPDDEILDLLDGAAVSYQVVLTKADKIKPTDLEKVMERTLKALAKHPAAFPAIIATSSEKGLGFEELRGTIAQLLES 215
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A2U1W0M8_9PROT (Probable GTP-binding protein EngB n=1 Tax=Azospirillum sp. TSO22-1 TaxID=716789 RepID=A0A2U1W0M8_9PROT) HSP 1 Score: 164 bits (414), Expect = 2.240e-45 Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 3
Query: 285 EYVTPASLGYELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNLTK 878
++V A +LP+ PEVAFAGRSN GKS+LI L G L RTS PG T+ +NFF + L LVD+PGYG+A++ K V W +V +L G RVVL+R VL+DSRHG++P D+ +L++LD A VP Q+VLTK DKV P L A+ HP++ P VH S+ KGLG+ E ++ LT+
Sbjct: 32 DFVWGADALSQLPEATLPEVAFAGRSNVGKSSLINALTGRRTLARTSNTPGRTQQLNFFDLGGR------LRLVDMPGYGYAKEAKDKVEAWNTLVRRFLKG--RVVLRRALVLIDSRHGLKPNDQEILTMLDQAAVPYQIVLTKADKVKPQALENIRIQTLAALKKHPAAFPEVHVTSSDKGLGIAELRASLAKLTE 221
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: UPI0020121EBD (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Emcibacteraceae bacterium Y4 TaxID=2857064 RepID=UPI0020121EBD) HSP 1 Score: 163 bits (413), Expect = 2.890e-45 Identity = 88/196 (44.90%), Postives = 128/196 (65.31%), Query Frame = 3
Query: 285 EYVTPASLGYELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNL 872
E++ A+ +LP+ EVAFAGRSN GKS+++ L G S L RTS PG T+ +NFF + G+ L LY+VDLPGYG+A+ +K+ V++W K++ +YL GRP L+R FVLVDSRHG++ D+ ++S+LD V QVVLTK DKV P + + I+ +AI + ++ P V S+ KG G+EE + +L
Sbjct: 27 EFLLGAASLTQLPEPNATEVAFAGRSNVGKSSILNALTGRSNLARTSNTPGRTQQLNFFFL--GNRSKLGLYVVDLPGYGYAKVSKKLVKDWVKLMRSYLRGRPN--LRRVFVLVDSRHGLKDSDKELMSMLDETAVSYQVVLTKCDKVKPSEQEKLIKKTEKAIAKNVAAHPEVLITSSVKGYGLEELRGVIADL 218
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A2D4VJ02_9HYPH (Probable GTP-binding protein EngB n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VJ02_9HYPH) HSP 1 Score: 162 bits (410), Expect = 3.290e-45 Identity = 84/171 (49.12%), Postives = 111/171 (64.91%), Query Frame = 3
Query: 336 PEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEE 848
PE AFAGRSN GKS+L+ L G L RTS PG TK +NFF + G L LVDLPGYG+AR+ K V +WT ++ +YL GRP L+R FVLVDSRHG++ D ++S+LD V Q+VLTK+DK+ ++L IE + + HP+S PV+H S+ KG G+ E
Sbjct: 2 PEGAFAGRSNVGKSSLVNALTGRKTLARTSNTPGRTKELNFFAL--GPAAGAALILVDLPGYGYARETKSRVAQWTALIIDYLRGRPE--LRRVFVLVDSRHGLKDSDRDVMSMLDEVAVSYQIVLTKIDKLKKNELESRIEEIRAELKKHPASHPVIHATSSEKGTGIAE 168
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: F8JH41_HYPSM (Probable GTP-binding protein EngB n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=F8JH41_HYPSM) HSP 1 Score: 162 bits (411), Expect = 5.560e-45 Identity = 88/185 (47.57%), Postives = 117/185 (63.24%), Query Frame = 3
Query: 318 LPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNL 872
LP +PE+AFAGRSN GKS+LI LVG +L R S PG T+ +NFFT P+ +LYLVD+PGYGFA K V W K++ YL GR L R F+LVD+RHG++P D+ ++++LD A V QVVLTKVDK++ DL + E A+ HP++ P + S+ K LG EE T+ L
Sbjct: 35 LPPDDRPEIAFAGRSNVGKSSLINALVGQLRLARASNTPGRTQDLNFFTE-----PNDELYLVDMPGYGFAEAPKDKVAAWNKVLRAYLAGRR--TLLRVFLLVDARHGLKPVDDEIMALLDGAAVSYQVVLTKVDKISKTDLEKVAERTQEALAKHPAAFPQLILTSSEKALGFEELRGTIAQL 212
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: UPI001B3BABB1 (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001B3BABB1) HSP 1 Score: 162 bits (409), Expect = 1.040e-44 Identity = 87/193 (45.08%), Postives = 123/193 (63.73%), Query Frame = 3
Query: 315 ELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNLTKAPRAQ 893
+LP+ QPE+AFAGRSN GKS+LI L + L RTS PG T+ +NFF + D L +VD+PGYG+A+++K V WT++V +YL G RV L+R VL+DSRHG +P D ++++LD A VP QVVLTK DKV +L ++ + HP++ P VH S+ GLG+ E ++ L AP+A+
Sbjct: 32 QLPEEAQPEIAFAGRSNVGKSSLINALTRRNTLARTSNTPGRTQQLNFFNLGDR------LTIVDMPGYGYAKESKEKVAAWTEMVRSYLKG--RVTLRRALVLIDSRHGTKPHDHEVMTMLDKAAVPYQVVLTKADKVKDKELQAMLDRTVAEMKKHPAAFPEVHLTSSETGLGIAELRASLAALA-APKAE 215
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A482SLS6_9ARCH (Probable GTP-binding protein EngB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLS6_9ARCH) HSP 1 Score: 163 bits (412), Expect = 1.990e-44 Identity = 86/197 (43.65%), Postives = 129/197 (65.48%), Query Frame = 3
Query: 273 SLRGEYVTPASLGYELPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLD---LYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIV--VHPSSVPVVHCVSAHKGLGMEE 848
SL Y+ P+ ++LP +PEVAF GRSN GKS+L+ L+G L+R SK PGCT T+N++ + G LD YL+D+PGYGFA+ K+ ++W +IV++YL R +++L+R FVL+DSR G+Q D M+ +L++A +P QVVLTK D V+ ++ + + I + S +P+VH VSA KGLG+E+
Sbjct: 70 SLNPTYIPPSYFNHQLPSAGRPEVAFVGRSNVGKSSLVEALLGTKGLLRISKEPGCTTTLNYYALAKGSA--LDDHACYLIDMPGYGFAKIAKQQQKKWLEIVNSYLMNRDQLLLRRVFVLIDSRRGVQMQDVEMMEMLNHAHIPYQVVLTKKDLVSDKEIKEKLFELFCVISRKKNNSCLPLVHVVSALKGLGLED 264
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Match: A0A2W4KWF0_9PROT (Probable GTP-binding protein EngB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KWF0_9PROT) HSP 1 Score: 160 bits (406), Expect = 4.000e-44 Identity = 86/185 (46.49%), Postives = 114/185 (61.62%), Query Frame = 3
Query: 318 LPKCRQPEVAFAGRSNAGKSTLIGQLVGNSKLVRTSKAPGCTKTVNFFTVRDGDVPHLDLYLVDLPGYGFARQNKRAVREWTKIVHNYLDGRPRVVLQRTFVLVDSRHGIQPGDEHMLSVLDNAQVPNQVVLTKVDKVTPHDLVRSIESVCRAIVVHPSSVPVVHCVSAHKGLGMEEFTNTVWNL 872
LP +PE+AFAGRSN GKS+LI LVG + L RTS PG T+ +NFF + + LYLVD+PGYGFA+ K V+ WT++V NYL GRP L+R F+L+DSRHGI+ D ++ +LD A V Q+VLTK DK L I + I HP++ P + SA KG G++ T+ L
Sbjct: 45 LPDADRPEIAFAGRSNVGKSSLINALVGQNGLARTSNTPGRTQELNFFATAN-----VALYLVDMPGYGFAQAPKEKVKAWTELVRNYLRGRP--TLKRVFLLIDSRHGIKSNDREIMEMLDEAAVSYQIVLTKADKPNLRQLRSVITATYETIASHPAAYPEILVTSAEKGQGIDVLRATIAEL 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60837.13623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60837.13623.1 >prot_H-elongata_contig60837.13623.1 ID=prot_H-elongata_contig60837.13623.1|Name=mRNA_H-elongata_contig60837.13623.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bp MRSLEVLRRLHGQLAVATRSPWVWVVQGVHPDTVPPISHPRPSLRGEYVTback to top mRNA from alignment at H-elongata_contig60837:1510..2936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60837.13623.1 ID=mRNA_H-elongata_contig60837.13623.1|Name=mRNA_H-elongata_contig60837.13623.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1427bp|location=Sequence derived from alignment at H-elongata_contig60837:1510..2936+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60837:1510..2936+ >mRNA_H-elongata_contig60837.13623.1 ID=mRNA_H-elongata_contig60837.13623.1|Name=mRNA_H-elongata_contig60837.13623.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at H-elongata_contig60837:1510..2936+ (Himanthalia elongata Himel1 dioecious)back to top |