mRNA_H-elongata_contig60819.13620.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60819.13620.1
Unique NamemRNA_H-elongata_contig60819.13620.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.640e-51
Identity = 96/183 (52.46%), Postives = 110/183 (60.11%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-----------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  ++MILVLDNASYHHGFD EVKVPETN K +NV+LLR FGA+SI V+RK+           T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  139 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGRQMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 321          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.410e-51
Identity = 98/185 (52.97%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-------------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGFD EVKVPETN K +NV+LLR FGA+SI VKRK+             T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  251 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRK 435          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 1.480e-50
Identity = 101/185 (54.59%), Postives = 113/185 (61.08%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-----------------------------------TA---------PNRVE----AFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  KKMILVLDNASYHHGFD EVKVPETN K +NV+LLRKFGA+SI VKRK+                                   TA         P R+E     FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  390 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 574          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.560e-50
Identity = 95/183 (51.91%), Postives = 110/183 (60.11%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-----------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGFD +VK+PE+N K +NV+LLR FGA+SI VKRK+           T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:   86 QAKLAKGDYHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRVKRKEGEQGVYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 268          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 2.710e-49
Identity = 97/185 (52.43%), Postives = 110/185 (59.46%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-------------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGFD EVKVPETN K +NV+LLR FGA+SI V+RK+             T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  356 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 540          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.810e-49
Identity = 95/185 (51.35%), Postives = 109/185 (58.92%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-------------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGFD EVKVPE+N K +NV+LLR FGA+SI V+RK+             T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS  F+  RK
Sbjct:  239 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRK 423          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.640e-48
Identity = 91/185 (49.19%), Postives = 107/185 (57.84%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKCFGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQTAP---------------------------------------------------NRVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGR 402
            Q K + GDYH +MTD MFMEWLERRL PAFK  +G+KKMILVLDNASYHHG+D EV VPE+N+K YN  LLRK+  + I+V+R+ T+                                                     +VE FM  +G  LIWTPPYMPSFQPI+LFW HGK YVSFNFKT R
Sbjct:  360 QAKRATGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYTFQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKR 544          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 4.260e-48
Identity = 96/185 (51.89%), Postives = 109/185 (58.92%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-------------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            Q KL+KGDYHA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGF  EVKVPETN K +NV+LLR FGA+SI V+RK+             T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  366 QAKLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 550          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.100e-48
Identity = 94/183 (51.37%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    7 KLSKGDYHASMTDAMFMEWLERRLIPAFKKC--FGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ-------------TAPN-----------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK 405
            K +KGD+HA+MTD+MFMEWLE RL PA+     F  K+MILVLDNASYHHGFD EVKVPETN K +NV+LLR FGA+SI V+RK+             T P                                    RV  FM+ KG  LIWTPPYMPSFQPI+LFW HGK YVS NF+  RK
Sbjct:  257 KFAKGDHHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRK 439          
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 7.290e-48
Identity = 89/179 (49.72%), Postives = 105/179 (58.66%), Query Frame = 1
Query:    1 QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKCFGDKKMILVLDNASYHHGFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQ---------------TAPN------------------------------RVEAFMQSKGSDLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGR 402
            Q KL+ GDYH +MTD MFM+WL+ RL PAF   F +KKM LVLDNASYHH FDEEVKVPETN+K YNVELLRK+G  S  V R+                + PN                              + E +M+ KG  LIWTPPYMP+FQPI+LFW HGK YVS +F+ GR
Sbjct:  205 QAKLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGKAAEYNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGR 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60819.13620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUM1_9PHAE1.640e-5152.46DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE6.410e-5152.97DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
D8LNM6_ECTSI1.480e-5054.59DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE1.560e-5051.91DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE2.710e-4952.43DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE6.810e-4951.35DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LQ25_ECTSI1.640e-4849.19Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5JR41_9PHAE4.260e-4851.89DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE7.100e-4851.37DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LE74_9PHAE7.290e-4849.72Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60819contigH-elongata_contig60819:235..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog34740.HMEL009783-PA
EggNOG OGs2CXRQ@1,2RZ9T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.6108937-CDS-H-elongata_contig60819:234..3721622930982.6108937-CDS-H-elongata_contig60819:234..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60819 235..372 -
1691679650.047742-CDS-H-elongata_contig60819:234..3721691679650.047742-CDS-H-elongata_contig60819:234..372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60819 235..372 -
1622930982.6294267-CDS-H-elongata_contig60819:522..7891622930982.6294267-CDS-H-elongata_contig60819:522..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60819 523..789 -
1691679650.0698516-CDS-H-elongata_contig60819:522..7891691679650.0698516-CDS-H-elongata_contig60819:522..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60819 523..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60819.13620.1prot_H-elongata_contig60819.13620.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60819 235..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60819.13620.1

>prot_H-elongata_contig60819.13620.1 ID=prot_H-elongata_contig60819.13620.1|Name=mRNA_H-elongata_contig60819.13620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
QTKLSKGDYHASMTDAMFMEWLERRLIPAFKKCFGDKKMILVLDNASYHH
GFDEEVKVPETNNKNYNVELLRKFGAQSISVKRKQTAPNRVEAFMQSKGS
DLIWTPPYMPSFQPIKLFWPHGKAYVSFNFKTGRK
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mRNA from alignment at H-elongata_contig60819:235..789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60819.13620.1 ID=mRNA_H-elongata_contig60819.13620.1|Name=mRNA_H-elongata_contig60819.13620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig60819:235..789- (Himanthalia elongata Himel1 dioecious)
CAGACTAAGTTGTCGAAGGGCGATTACCACGCATCCATGACCGATGCGAT GTTCATGGAGTGGCTTGAGCGCCGCCTCATACCAGCTTTCAAGAAGTGTT TTGGCGATAAGAAGATGATTCTCGTTCTCGACAACGCATCGTACCACCAC GGCTTCGACGAGGAGGTAAAGGTGCCTGAAACCAACAATAAGAACTACAA TGTCGAATTGTTGCGCAAGTTTGGGGCACAGAGCATCTCGGTAAAGCGCA AGCAAACCGCACCCAACGTTTGTGTTTCTGACTTTCACTTTGAAGTCCCA CAAGAGCCTGGGTCTACGTTTCCTGGGGCGAGATCGGTAGGTGGAGTAAG CAAAGAGGAGGTCGCGATCGCTACTCGGGCGTACTTGCAGCTTCACCACC CTACCAAACTCGTTGAGCGTGTAGAGGCGTTCATGCAGAGTAAGGGGTCG GATTTAATTTGGACACCCCCGTACATGCCATCTTTCCAGCCGATCAAGCT GTTTTGGCCGCATGGCAAGGCGTACGTCAGCTTCAATTTTAAGACGGGAC GGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig60819:235..789-

>mRNA_H-elongata_contig60819.13620.1 ID=mRNA_H-elongata_contig60819.13620.1|Name=mRNA_H-elongata_contig60819.13620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig60819:235..789- (Himanthalia elongata Himel1 dioecious)
CAGACTAAGTTGTCGAAGGGCGATTACCACGCATCCATGACCGATGCGAT
GTTCATGGAGTGGCTTGAGCGCCGCCTCATACCAGCTTTCAAGAAGTGTT
TTGGCGATAAGAAGATGATTCTCGTTCTCGACAACGCATCGTACCACCAC
GGCTTCGACGAGGAGGTAAAGGTGCCTGAAACCAACAATAAGAACTACAA
TGTCGAATTGTTGCGCAAGTTTGGGGCACAGAGCATCTCGGTAAAGCGCA
AGCAAACCGCACCCAACCAGACTAAGTTGTCGAAGGGCGATTACCACGCA
TCCATGACCGATGCGATGTTCATGGAGTGGCTTGAGCGCCGCCTCATACC
AGCTTTCAAGAAGTGTTTTGGCGATAAGAAGATGATTCTCGTTCTCGACA
ACGCATCGTACCACCACGGCTTCGACGAGGAGGTAAAGGTGCCTGAAACC
AACAATAAGAACTACAATGTCGAATTGTTGCGCAAGTTTGGGGCACAGAG
CATCTCGGTAAAGCGCAAGCAAACCGCACCCAACCGTGTAGAGGCGTTCA
TGCAGAGTAAGGGGTCGGATTTAATTTGGACACCCCCGTACATGCCATCT
TTCCAGCCGATCAAGCTGTTTTGGCCGCATGGCAAGGCGTACGTCAGCTT
CAATTTTAAGACGGGACGGAAGCGTGTAGAGGCGTTCATGCAGAGTAAGG
GGTCGGATTTAATTTGGACACCCCCGTACATGCCATCTTTCCAGCCGATC
AAGCTGTTTTGGCCGCATGGCAAGGCGTACGTCAGCTTCAATTTTAAGAC
GGGACGGAAG
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