mRNA_H-elongata_contig60817.13619.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60817.13619.1
Unique NamemRNA_H-elongata_contig60817.13619.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A6H5KT04_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT04_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 6.300e-64
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S +LGFLAAGV LGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSV R++AMKRD FG+GLATFG++AAAVAG  YLAGLTGAQM+VIGGGVALSSSAFVLQLL+DRDD+GTRYGRACFGILLFQ
Sbjct:  363 SPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVTRLMAMKRDVFGLGLATFGMSAAAVAGACYLAGLTGAQMVVIGGGVALSSSAFVLQLLRDRDDLGTRYGRACFGILLFQ 489          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: D8LS49_ECTSI (Similarity to sodium/hydrogen exchanger and potassium exchanger n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS49_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 7.780e-62
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S +LGFLAAGV LGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSV R++AMKRD FG+GLATFGV+AAAVAG  Y+AGLTGAQM+VIGGGVALSSSAFVLQLL+DRDD+GTRYGRACFGILLFQ
Sbjct:  331 SPVLGFLAAGVALGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVTRLMAMKRDVFGLGLATFGVSAAAVAGACYVAGLTGAQMVVIGGGVALSSSAFVLQLLRDRDDLGTRYGRACFGILLFQ 457          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A835Z5B4_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5B4_9STRA)

HSP 1 Score: 171 bits (434), Expect = 9.520e-48
Identity = 92/127 (72.44%), Postives = 105/127 (82.68%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLA G +LGPN L +++DVKA EVLGE+GIVFFLFEMGLELS+QR+ AMK+D FG+GLA F +TA  VA V   AGL    ++VIGGG+ALSSSAFVLQLLKDRDDMGTRYGRA FGILL Q
Sbjct:   16 SPILGFLATGTLLGPNGLRLIADVKATEVLGELGIVFFLFEMGLELSIQRLAAMKKDVFGLGLAQFFLTALGVAAVASRAGLGAPALVVIGGGIALSSSAFVLQLLKDRDDMGTRYGRASFGILLLQ 142          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A4D9D2S5_9STRA (Na_H_Exchanger domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2S5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.010e-43
Identity = 77/127 (60.63%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFL  G+VLGP  LS+V+D+K  E L E+GIVFFLFEMGLELSV+R+++M+RD FG+G A F ++A A+  +  + GL G   +V+GG +ALSSSAFVLQLL+D+D +GTR+GRA FG+LLFQ
Sbjct:   71 SPILGFLLTGMVLGPRGLSVVNDIKTTEALAELGIVFFLFEMGLELSVERLISMRRDVFGLGFAQFSLSAVAIFILSRMRGLPGPTSVVVGGALALSSSAFVLQLLRDKDSLGTRHGRASFGVLLFQ 197          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S2A6S9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6S9_TRICV)

HSP 1 Score: 152 bits (383), Expect = 3.570e-43
Identity = 81/128 (63.28%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLA-GLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLAAG +LGPN L  +S +   E L E+GIVFFLFEMG+ELS +R+L+MK+D FG+GL+ F  TA AVA VG +A GL    ++V+GGG+ALSSSAFVLQLLKD+D + TR+GRA FG+LLFQ
Sbjct:  126 SPILGFLAAGTILGPNALGWISGIHTTETLAELGIVFFLFEMGIELSFERLLSMKKDVFGLGLSQFLTTAVAVAAVGRVAFGLPANALVVLGGGLALSSSAFVLQLLKDKDQLATRFGRASFGVLLFQ 253          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S3L4P7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4P7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.510e-42
Identity = 80/127 (62.99%), Postives = 103/127 (81.10%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLA+G++LGPN   ++S +   E L E+GIVFFLFEMG+ELSV+R++ M++D FG+GL  FG+TA AVAG G L GL G  ++V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FGILLFQ
Sbjct:  254 SPILGFLASGMLLGPNGCGLISGIHTTETLAELGIVFFLFEMGIELSVERLMQMRKDVFGLGLGQFGLTALAVAGFGSLFGLPGNALVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGILLFQ 380          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S2MX89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX89_9STRA)

HSP 1 Score: 152 bits (383), Expect = 7.110e-42
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLAAG++LGPN   ++S +   E L E+GIVFFLFEMG+ELS  R+L+MK+D FG+GL+ F  TA  + GVG L GL G   +V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FG+LLFQ
Sbjct:  239 SPILGFLAAGMLLGPNGFGLISGIHTTETLAELGIVFFLFEMGIELSFNRLLSMKKDVFGLGLSQFLTTAITIGGVGRLCGLPGNAGVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGVLLFQ 365          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S4VUL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUL3_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.250e-41
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLAAG++LGPN   ++S +   E L E+GIVFFLFEMG+ELS  R+++MK+D FG+GL+ F  TA AV GVG   GL G   +V+GGG+ALSSSAFVLQLLKD+D + TR+G+A FG+LLFQ
Sbjct:  242 SPILGFLAAGMLLGPNGFGLISGIHTTETLAELGIVFFLFEMGIELSFDRLISMKKDVFGLGLSQFITTAIAVGGVGKFCGLPGNACVVLGGGLALSSSAFVLQLLKDKDQLATRFGKASFGVLLFQ 368          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A7S0Y7X8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7X8_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.920e-41
Identity = 76/127 (59.84%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLA+G++LGPN   +++D+   EVL E+GIVFFLFEMG+ELS++R+ +MKRD FG+GL+ F  +A A+AGVG + GL    ++V+GGG+ALSSSAFVLQLLKD++ + TR+G+A FG+LLFQ
Sbjct:    5 SPILGFLASGMLLGPNGFGLIADIHTTEVLAELGIVFFLFEMGIELSIERLTSMKRDVFGLGLSQFLASAIAIAGVGKVVGLPANAVVVLGGGLALSSSAFVLQLLKDKNQLATRFGKASFGVLLFQ 131          
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Match: A0A1E7FVM6_9STRA (Na_H_Exchanger-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVM6_9STRA)

HSP 1 Score: 150 bits (380), Expect = 2.930e-40
Identity = 79/127 (62.20%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQRMLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSAFVLQLLKDRDDMGTRYGRACFGILLFQ 381
            S ILGFLA+G++LGPN   ++  + A E L E+GIVFFLFEMGLELSV R+L+MKRD FG+GL+ F  +A A+AGVG +  L    ++VIGGG+ALSSSAFVLQLLKD++ M TR+G+A FG+LLFQ
Sbjct:   39 SPILGFLASGMLLGPNGFGLIGGIHATETLAELGIVFFLFEMGLELSVARLLSMKRDVFGLGLSQFLCSALAIAGVGKILKLPANALVVIGGGLALSSSAFVLQLLKDKNQMATRFGKASFGVLLFQ 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60817.13619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT04_9PHAE6.300e-6488.19Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
D8LS49_ECTSI7.780e-6288.19Similarity to sodium/hydrogen exchanger and potass... [more]
A0A835Z5B4_9STRA9.520e-4872.44Sodium/hydrogen exchanger family-domain-containing... [more]
A0A4D9D2S5_9STRA2.010e-4360.63Na_H_Exchanger domain-containing protein n=1 Tax=N... [more]
A0A7S2A6S9_TRICV3.570e-4363.28Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3L4P7_9STRA6.510e-4262.99Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2MX89_9STRA7.110e-4261.42Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S4VUL3_9STRA2.250e-4161.42Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0Y7X8_9STRA8.920e-4159.84Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FVM6_9STRA2.930e-4062.20Na_H_Exchanger-domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60817contigH-elongata_contig60817:1742..3069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.8
Seed ortholog evalue5.1e-53
Seed eggNOG ortholog2880.D8LS49
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.5116298-CDS-H-elongata_contig60817:1741..18251622930982.5116298-CDS-H-elongata_contig60817:1741..1825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60817 1742..1825 +
1691679650.0253243-CDS-H-elongata_contig60817:1741..18251691679650.0253243-CDS-H-elongata_contig60817:1741..1825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60817 1742..1825 +
1622930982.5318065-CDS-H-elongata_contig60817:2742..30691622930982.5318065-CDS-H-elongata_contig60817:2742..3069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60817 2743..3069 +
1691679650.036997-CDS-H-elongata_contig60817:2742..30691691679650.036997-CDS-H-elongata_contig60817:2742..3069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60817 2743..3069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60817.13619.1prot_H-elongata_contig60817.13619.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60817 1742..3069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60817.13619.1

>prot_H-elongata_contig60817.13619.1 ID=prot_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
SSILGFLAAGVVLGPNCLSIVSDVKAIEVLGEMGIVFFLFEMGLELSVQR
MLAMKRDTFGMGLATFGVTAAAVAGVGYLAGLTGAQMIVIGGGVALSSSA
FVLQLLKDRDDMGTRYGRACFGILLFQVRRARGGER*
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mRNA from alignment at H-elongata_contig60817:1742..3069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60817.13619.1 ID=mRNA_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-elongata_contig60817:1742..3069+ (Himanthalia elongata Himel1 dioecious)
TCGTCAATCCTCGGGTTTCTGGCCGCCGGCGTCGTTCTGGGGCCGAACTG CCTGAGCATCGTGTCCGACGTGAAGGCCATTGAGGTGCGAGGGGCTCGAG TCGTCAGGGCATTTTATCTGTGGTGTTAATTGAGAGGGGGGATAGGGGGG ATGGCGTTCAAAGGTTTAACGCGGGTCCGTTCCGGGAAGCTACGAGTGAT GGGAAACTAGTTTTATGTTATTTTGTGTGTTGAAAACTCTAGCTTACACC TTGGGACCGTCATCATCGCCGTTTCGATCACTCTATATTGCCGTTGCCGG TTTAAGGGGTAGAAGGTGAGGTGAGGGCCGGTCGATCCGTTGCTGATGTA AAGGACAGGAGATGAGGGCCGGTAGAACTGTTGTCAAAGTGTTGTTCTTG CTGATGTTCTCGCGTATGGTTTTCGCCGAACAGAGGGAAAATCCCTACCA CCCCAAAGCGGGGAAACCCCTCCCCCCCAAAATGTGTATAACGTAGGTGC GTTGTCCCTTTACAACGCTACTGCTGCTGCTATGTTTTGTTTAAAAAGTC GTGGGTGAGGGAAGAAAGGAGGGCTTCGGAACGTCGAAAGCGACGTGCGA TATATTTTTGGGGTTTGCGACTCGCATTTTGTCGATTTATTTTTCACCTT ATTAACAATCGACCATCGTCGGCCCAGTCGTCGAGGCACGCGCCCAGAAA CTGCCAGGCAATCAGGCAGACACCTTTGCCTTCCCGTCGTCGATATTAAA TGACATTAGACGTTGGAAATTAGATTAGATAACATTGGGAATTATACGGG GATTTCGATTATCTATAGCGGCGGACAGCGCATCCAAAACACCTCGGCGT TCGGTTGTCTAGATCGACTCGACCCGATACCGCGTATCTTTGTCGTGGCA ACTAGAGCGCAGTATCTGCGCCTCGACGACGAATGTTTTGCGTGCTGCTA CTGCTGCTACTACTACTACTACTACTTCTGCCGTTTAAACTTCGTCCACA GGTTCTGGGCGAGATGGGGATCGTCTTCTTCTTGTTTGAGATGGGCCTGG AGCTCAGCGTGCAGCGCATGTTAGCCATGAAGCGCGACACATTCGGCATG GGGCTGGCCACCTTCGGGGTCACCGCCGCGGCTGTCGCCGGCGTGGGCTA CCTGGCGGGCCTCACGGGGGCGCAGATGATTGTGATCGGTGGTGGCGTGG CTCTGTCGAGCAGCGCCTTCGTGCTGCAGCTGCTAAAGGACCGCGACGAC ATGGGCACGCGCTACGGTCGCGCGTGCTTCGGCATCCTGCTCTTCCAGGT GCGGCGAGCGCGTGGGGGCGAGCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60817:1742..3069+

>mRNA_H-elongata_contig60817.13619.1 ID=mRNA_H-elongata_contig60817.13619.1|Name=mRNA_H-elongata_contig60817.13619.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig60817:1742..3069+ (Himanthalia elongata Himel1 dioecious)
TCGTCAATCCTCGGGTTTCTGGCCGCCGGCGTCGTTCTGGGGCCGAACTG
CCTGAGCATCGTGTCCGACGTGAAGGCCATTGAGTCGTCAATCCTCGGGT
TTCTGGCCGCCGGCGTCGTTCTGGGGCCGAACTGCCTGAGCATCGTGTCC
GACGTGAAGGCCATTGAGGTTCTGGGCGAGATGGGGATCGTCTTCTTCTT
GTTTGAGATGGGCCTGGAGCTCAGCGTGCAGCGCATGTTAGCCATGAAGC
GCGACACATTCGGCATGGGGCTGGCCACCTTCGGGGTCACCGCCGCGGCT
GTCGCCGGCGTGGGCTACCTGGCGGGCCTCACGGGGGCGCAGATGATTGT
GATCGGTGGTGGCGTGGCTCTGTCGAGCAGCGCCTTCGTGCTGCAGCTGC
TAAAGGACCGCGACGACATGGGCACGCGCTACGGTCGCGCGTGCTTCGGC
ATCCTGCTCTTCCAGGTGCGGCGAGCGCGTGGGGGCGAGCGCTGAGTTCT
GGGCGAGATGGGGATCGTCTTCTTCTTGTTTGAGATGGGCCTGGAGCTCA
GCGTGCAGCGCATGTTAGCCATGAAGCGCGACACATTCGGCATGGGGCTG
GCCACCTTCGGGGTCACCGCCGCGGCTGTCGCCGGCGTGGGCTACCTGGC
GGGCCTCACGGGGGCGCAGATGATTGTGATCGGTGGTGGCGTGGCTCTGT
CGAGCAGCGCCTTCGTGCTGCAGCTGCTAAAGGACCGCGACGACATGGGC
ACGCGCTACGGTCGCGCGTGCTTCGGCATCCTGCTCTTCCAGGTGCGGCG
AGCGCGTGGGGGCGAGCGCTGA
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