mRNA_H-elongata_contig60790.13617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60790.13617.1
Unique NamemRNA_H-elongata_contig60790.13617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60790.13617.1 vs. uniprot
Match: D7FJW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW8_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 2.540e-81
Identity = 130/175 (74.29%), Postives = 147/175 (84.00%), Query Frame = 1 
Query:    1 RRPRMGVTCESMSLKLLTGQARLVEALAGMYMKSVIFFADEGRGEFSIPGAPQQAFLPYERALYSAGMRDGDVVTLVDGLPATQGTLAKLGVKAHSQCNQPCVACVRLTFLRPIGASPTIPLASPQSVIDRWRELVRIIVLDSVPESQRKKEVLEQLERLQDASTLRTLACHSFE 525
            R+ R+GVTCE+MSL+LLT Q+RLVEALAGMYMKS +F ADEG GE S+PGAPQ AFLP ERALY+AGMRDGDVVTLVDGLPATQ TL  LG KAHS CN+PCVA VRLTFLRP G S  +P  SPQSV+D WRE VR+IVL+SVPES RK EV+ +L RLQDA+TLR LAC +FE
Sbjct:    9 RQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQ-AFLPVERALYAAGMRDGDVVTLVDGLPATQETLGALGDKAHSNCNEPCVASVRLTFLRPCGTS--VPPRSPQSVLDLWREHVRVIVLNSVPESNRKHEVMLELSRLQDATTLRALACQAFE 180
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BLAST of mRNA_H-elongata_contig60790.13617.1 vs. uniprot
Match: A0A6H5JPZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 5.460e-60
Identity = 111/163 (68.10%), Postives = 125/163 (76.69%), Query Frame = 1 
Query:    1 RRPRMGVTCESMSLKLLTGQARLVEALAGMYMKSVIFFADEGRGEFSIPGAPQQAFLPYERALYSAGMRDGDVVTLVDGLPATQGTLAKLGVKAHSQC-----------------NQPCVACVRLTFLRPIGASPTIPLASPQSVIDRWRELVRIIVLDSVPE 438
            R+ R+GVTCE+MSL+LLT Q+RLVEALAGMYMKS +F ADEG GE S+PGAPQ AFLP ERALY+AGMRDGDVVTLVDGLPATQ TL  LG KAHS+C                 N+PCVA VRLTFLRP G S  +P  SPQSV+D WRE VR+IVL+SVPE
Sbjct:  307 RQGRVGVTCETMSLQLLTAQSRLVEALAGMYMKSTMFRADEGLGELSLPGAPQ-AFLPVERALYAAGMRDGDVVTLVDGLPATQDTLGALGDKAHSKCRKLFTAWSPPPPFPSPQNEPCVASVRLTFLRPCGTS--VPPRSPQSVLDLWREHVRVIVLNSVPE 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60790.13617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJW8_ECTSI2.540e-8174.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPZ0_9PHAE5.460e-6068.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60790contigH-elongata_contig60790:1117..2854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size525
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60790.13617.1prot_H-elongata_contig60790.13617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60790 1117..2842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.279632-CDS-H-elongata_contig60790:1116..12031622930982.279632-CDS-H-elongata_contig60790:1116..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 1117..1203 -
1691679649.9277008-CDS-H-elongata_contig60790:1116..12031691679649.9277008-CDS-H-elongata_contig60790:1116..1203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 1117..1203 -
1622930982.2948396-CDS-H-elongata_contig60790:1754..18981622930982.2948396-CDS-H-elongata_contig60790:1754..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 1755..1898 -
1691679649.9355774-CDS-H-elongata_contig60790:1754..18981691679649.9355774-CDS-H-elongata_contig60790:1754..1898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 1755..1898 -
1622930982.3151054-CDS-H-elongata_contig60790:2201..23361622930982.3151054-CDS-H-elongata_contig60790:2201..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 2202..2336 -
1691679649.9496245-CDS-H-elongata_contig60790:2201..23361691679649.9496245-CDS-H-elongata_contig60790:2201..2336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 2202..2336 -
1622930982.3322167-CDS-H-elongata_contig60790:2695..28421622930982.3322167-CDS-H-elongata_contig60790:2695..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 2696..2842 -
1691679649.9636307-CDS-H-elongata_contig60790:2695..28421691679649.9636307-CDS-H-elongata_contig60790:2695..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60790 2696..2842 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.3506868-UTR-H-elongata_contig60790:2842..28541622930982.3506868-UTR-H-elongata_contig60790:2842..2854Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60790 2843..2854 -
1691679649.972452-UTR-H-elongata_contig60790:2842..28541691679649.972452-UTR-H-elongata_contig60790:2842..2854Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60790 2843..2854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60790.13617.1

>prot_H-elongata_contig60790.13617.1 ID=prot_H-elongata_contig60790.13617.1|Name=mRNA_H-elongata_contig60790.13617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MGVTCESMSLKLLTGQARLVEALAGMYMKSVIFFADEGRGEFSIPGAPQQ
AFLPYERALYSAGMRDGDVVTLVDGLPATQGTLAKLGVKAHSQCNQPCVA
CVRLTFLRPIGASPTIPLASPQSVIDRWRELVRIIVLDSVPESQRKKEVL
EQLERLQDASTLRTLACHSFE
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mRNA from alignment at H-elongata_contig60790:1117..2854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60790.13617.1 ID=mRNA_H-elongata_contig60790.13617.1|Name=mRNA_H-elongata_contig60790.13617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1738bp|location=Sequence derived from alignment at H-elongata_contig60790:1117..2854- (Himanthalia elongata Himel1 dioecious)
CGCCGGCCGCGCATGGGGGTGACGTGCGAGAGCATGTCGTTGAAGCTGTT
GACGGGGCAGGCCCGGCTGGTGGAAGCCTTGGCCGGGATGTACATGAAGA
GCGTCATCTTCTTCGCCGATGAAGGACGCGGCGAATTTTCCATACCGGGC
GCTCCTCAGGTAGAGTAGGGTGTAGTGTCTAGTGTAGAGTGTGGTGTAGT
TGAGCATAGCGTACGCGGTTACCAATCCGGGTCGGATACTAGTAGATACG
TGATGTGGTACGTGATGTAATACGGTACGGTGAGATGTAGCACACCGTTG
TAAAATATTGTGAAGCATTCGTTTGCGGATATTGAAGGGTCCTCGTTGAA
GTTTCATGGAACATTCCCGTGCCTCTCTGTCTGTTAGCCTTCTCCCTGCC
TCTCTCTATCACCATATAGCAGTGCGTGTCTTTTCTCTTTACATTTTTAT
ATAACATAATCTTTCGCACCTTCCGTCTCGCCACGAAATCGGTCCCGCTT
CCCCGGCGTTCCCTGGAGCAGGCGTTCTTGCCATACGAGCGGGCCCTGTA
CTCGGCGGGTATGCGGGACGGTGATGTCGTCACGCTAGTGGATGGGCTGC
CCGCCACCCAGGGAACGCTCGCCAAGCTGGGAGTCAAGGCTCACTCTCAA
TGCGTAAGTCTATGCACGTCGAAGACCACATGAGAGGGTAGCCATGTTGG
CTAACCACCCCCCACCCCCTTCTGTTTTTGACTCTGTTTGAATCATTCAT
CGGGTTTTTAGAGGGTGAGGCGTTATGGAGACGCATTTGTTTTGTAGCAG
TATCTGAAGTGTTTATGTGTGTATATGTGTGTCTCTATGTGCGTGAGAAT
GTTTTGTGTTTCTGCGTGCCTTCTAGAATCCAACATACGCGATTCGTACC
CCAAACCACGTCCCTGTTTCCTCGCCCCTCGACGGCCGATCTCCATCTCC
GTTTAGAATCAACCCTGCGTTGCCTGCGTACGGCTGACCTTTCTCCGTCC
GATCGGAGCCAGCCCGACCATACCGCTAGCATCTCCGCAGTCTGTCATCG
ATCGCTGGCGTGAGCTCGTGCGGATCATCGTACTCGACAGCGTCCCAGAG
GTAACCGACTGCTGAATTACTGGAATGATTTACTGAAACAATAGTTGTCC
TTGAAATGATGTGCCTGGTACCTAGCTCTCTAATAATAGCTCTCACCTGG
CTGTCTGACTATCCCTTGGATAACGAGTTGGTTGGCTGGCTGACTGATTA
ACTGATTTCGACTTGTTAAATTATGAAAGTGTACGGTAAGGCAAACCGTC
TCACAGGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCGTATTTATTAAA
TTCCACATAACCGCGCAATCCGGCTCTGTCATGATAGCTCTTCTAGGCTA
CTCTCGCATTGATCCTCCCAATGGGGGATGTGTCTGTGTGTGTGTGTATT
TATCAAAGTGGACATAACCGTGCAATCTGGGTATGTTTTTAGCGATATAT
ATATAATTTTCTCCCTTTTTTTCTTGTGCCAAACAATCGATCCTTCTTTT
TTCATGAACCGTTTTTGAAACGATCCACCCTTTTTCACACAAGTGCTGGA
TTTTTTATTCTTCGTTTTTTTCCTGGTTTTGTTTTCGTTTTTTTTCAAAA
GTCTCAGAGAAAGAAGGAAGTCCTGGAGCAGCTCGAAAGGCTTCAAGACG
CGAGCACTCTCCGAACACTTGCATGTCATTCATTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig60790:1117..2854-

>mRNA_H-elongata_contig60790.13617.1 ID=mRNA_H-elongata_contig60790.13617.1|Name=mRNA_H-elongata_contig60790.13617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig60790:1117..2854- (Himanthalia elongata Himel1 dioecious)
ATGGGGGTGACGTGCGAGAGCATGTCGTTGAAGCTGTTGACGGGGCAGGC
CCGGCTGGTGGAAGCCTTGGCCGGGATGTACATGAAGAGCGTCATCTTCT
TCGCCGATGAAGGACGCGGCGAATTTTCCATACCGGGCGCTCCTCAGATG
GGGGTGACGTGCGAGAGCATGTCGTTGAAGCTGTTGACGGGGCAGGCCCG
GCTGGTGGAAGCCTTGGCCGGGATGTACATGAAGAGCGTCATCTTCTTCG
CCGATGAAGGACGCGGCGAATTTTCCATACCGGGCGCTCCTCAGCAGGCG
TTCTTGCCATACGAGCGGGCCCTGTACTCGGCGGGTATGCGGGACGGTGA
TGTCGTCACGCTAGTGGATGGGCTGCCCGCCACCCAGGGAACGCTCGCCA
AGCTGGGAGTCAAGGCTCACTCTCAATGCCAGGCGTTCTTGCCATACGAG
CGGGCCCTGTACTCGGCGGGTATGCGGGACGGTGATGTCGTCACGCTAGT
GGATGGGCTGCCCGCCACCCAGGGAACGCTCGCCAAGCTGGGAGTCAAGG
CTCACTCTCAATGCAATCAACCCTGCGTTGCCTGCGTACGGCTGACCTTT
CTCCGTCCGATCGGAGCCAGCCCGACCATACCGCTAGCATCTCCGCAGTC
TGTCATCGATCGCTGGCGTGAGCTCGTGCGGATCATCGTACTCGACAGCG
TCCCAGAGAATCAACCCTGCGTTGCCTGCGTACGGCTGACCTTTCTCCGT
CCGATCGGAGCCAGCCCGACCATACCGCTAGCATCTCCGCAGTCTGTCAT
CGATCGCTGGCGTGAGCTCGTGCGGATCATCGTACTCGACAGCGTCCCAG
AGTCTCAGAGAAAGAAGGAAGTCCTGGAGCAGCTCGAAAGGCTTCAAGAC
GCGAGCACTCTCCGAACACTTGCATGTCATTCATTTGAGTCTCAGAGAAA
GAAGGAAGTCCTGGAGCAGCTCGAAAGGCTTCAAGACGCGAGCACTCTCC
GAACACTTGCATGTCATTCATTTGAG
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