mRNA_H-elongata_contig60729.13611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60729.13611.1
Unique NamemRNA_H-elongata_contig60729.13611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.850e-29
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    1 NIQLWHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            N   WHR L HLN  S+E +++ + NG     ++  CD+CAI K +QLAHP+K    + T P +L Y D MG  TP A GGF YVSK TD ++    +YLL+     + + H +    A   G R+   R + GG+  +  F ++F++  IT ++ ATNTPQ
Sbjct:  307 NANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTN-RETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQ 467          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.820e-26
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   10 LWHRQLGHLNRTSLEPMQRHQINGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            LWHR+L H ++  +E   R +  G      +  C+ C ++K  Q  HPK A+++ + +P +  Y DL+GP +P A GGFNYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R+D GG+YT++ + +F     I ++F A  TPQ
Sbjct:  470 LWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAV-QPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQ 627          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.820e-25
Identity = 59/157 (37.58%), Postives = 87/157 (55.41%), Query Frame = 1
Query:   16 HRQLGHLNRTSLEPMQRHQIN-----GTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            HR+LGHLN  S++ +++ + N      ++  CD+CAI K  QLAHPKK    + T P  L Y D+MG  TP A GGF YVS   D ++R   +YLL+ K   + + H +    A   G  +   R D+G +  +  F  + ++  IT ++ ATNTPQ
Sbjct:  110 HRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTS-RETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAKSETVRALHAYNMQVAAPLGRGIEIIRCDRGRENVANEFTTYCMDSGITIEYAATNTPQ 265          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 6.450e-25
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 1
Query:   70 QINGTIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            ++   +A C+ C I+K  Q  HPK AQ++ + +P +  Y DL+GP +P A GG+NYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R+D GG+YTS+ ++ F     I ++F A  TPQ
Sbjct:   13 KLKDKMAPCETCIIQKSTQKKHPKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQ 145          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.370e-25
Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   13 WHRQLGHLNRTSLEPMQRHQING-----TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            WH++LGH N   LE + R   +G     + + C  C I K  Q  HPK A    IT   +L   DL+GP +P A GG+NY++K TD  TR  AVY + +KG AL S   ++   A   G RV    +D GG+Y +  F+ +     I ++F + +TPQ
Sbjct:  240 WHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQ 397          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS)

HSP 1 Score: 101 bits (252), Expect = 4.850e-22
Identity = 57/163 (34.97%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   10 LWHRQLGHLNRTSLEPMQ-RHQING--------TIADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            LWHR+ GHLN   L  +  +  +NG        T A CD+C   K  + + PKK+ +   T P +L + D+ GP +P ++ G  Y+    D F+R    +LL EK  A   F  F  +     G +++  RTD+GG+Y+SKAF++F  E  I ++  A  TPQ
Sbjct:  413 LWHRRFGHLNYGGLRILAAKKMVNGLPITGLEETEAACDICFRGKQNRHSIPKKSDWKSTT-PLQLVHSDICGPISPISESGKRYIINFIDDFSRKCWTFLLTEKSEAFQVFKEFKAAAERESGQQLVCLRTDRGGEYSSKAFEEFCRENGIKRQLTAAYTPQ 574          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 100 bits (249), Expect = 1.270e-21
Identity = 57/161 (35.40%), Postives = 80/161 (49.69%), Query Frame = 1
Query:   10 LWHRQLGHLNRTSLEPMQRHQINGTIAD-------CDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            LWH +LGH+N   +E M R  +   I         C+ C + K  + + P +AQ+     P EL Y DL GP TP+  GG  Y   I D F R+  VY+++ K  A   F  F T        ++   RTD+GG++TS+AF  F  E  I ++  A  TPQ
Sbjct:  481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWR-AKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQ 640          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: UPI001929FDC5 (uncharacterized protein LOC120272535 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI001929FDC5)

HSP 1 Score: 97.1 bits (240), Expect = 1.660e-20
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   10 LWHRQLGHLNRTSLEPMQRHQ-INGT-----IADCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            LWHR+ GHLN+ SL  +  H+ ++G      I  C+ CA+ K    A PK   Y   T P EL +GDL+GP    + GG  Y   + D F+R + VY L+ K  AL  F +F  +        V  +R+D+G ++TS AF+ F  E  I  +  A  TP+
Sbjct:  369 LWHRRYGHLNKRSLNYLNEHKLVDGLPTITHIQPCEACALGKQAHRAFPKGQAYR-ATTPLELVHGDLVGPMQTPSYGGNLYFFLLIDDFSRHSWVYFLQYKNEALQKFKVFKLAVEKQYSTPVKAFRSDRGREFTSGAFRAFCEETGIKHQLTAPRTPR 527          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A6H5KFB1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.590e-20
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:   85 IADCDVCAIEK---PQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            +A C+ C I+K   P++    K AQ++ + +P +  Y DL+GP +P A GG+NYVSK TD+++R   VYL+  K  A+ +   FI       G R+ R R D GG+Y+S+ ++ F     I ++F    TPQ
Sbjct:    1 MAPCETCKIQKSTLPKRNTLTKTAQHTAV-QPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRNDNGGEYSSEYYRDFCKTIGIVQEFTVPATPQ 131          
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Match: A0A2K3MWU3_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MWU3_TRIPR)

HSP 1 Score: 95.1 bits (235), Expect = 9.600e-20
Identity = 53/162 (32.72%), Postives = 81/162 (50.00%), Query Frame = 1
Query:    7 QLWHRQLGHLNRTSLEPM-QRHQINGTIA------DCDVCAIEKPQQLAHPKKAQYSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKGCALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKFVATNTPQ 471
            QLWH++ GHL+   L  + ++  + G  A       C  C   K  +   PKK  +   T   EL + D+ GP  P ++ G  Y    TD FTR T VY+L++K  A  SF  F        G +++  RTD+GG++ S+AF ++  E+ I ++     TPQ
Sbjct:  428 QLWHKRYGHLSYKGLNTLVKKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWR-ATHKLELIHSDICGPINPASNSGNKYFITFTDDFTRKTWVYILQDKASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSEAFNKYCTEQGIKRQLTTAYTPQ 588          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60729.13611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYD3_9PHAE4.850e-2938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE1.820e-2637.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JT61_9PHAE3.820e-2537.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE6.450e-2539.55Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KAG6_9PHAE7.370e-2537.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HN99_9BRAS4.850e-2234.97Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI0016531AD11.270e-2135.40uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
UPI001929FDC51.660e-2036.25uncharacterized protein LOC120272535 n=1 Tax=Diosc... [more]
A0A6H5KFB1_9PHAE3.590e-2037.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3MWU3_TRIPR9.600e-2032.72Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60729contigH-elongata_contig60729:48..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score97.8
Seed ortholog evalue4.7e-18
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.721811-CDS-H-elongata_contig60729:47..5211622930981.721811-CDS-H-elongata_contig60729:47..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60729 48..521 -
1691679649.7679217-CDS-H-elongata_contig60729:47..5211691679649.7679217-CDS-H-elongata_contig60729:47..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60729 48..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60729.13611.1prot_H-elongata_contig60729.13611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60729 48..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60729.13611.1

>prot_H-elongata_contig60729.13611.1 ID=prot_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
NIQLWHRQLGHLNRTSLEPMQRHQINGTIADCDVCAIEKPQQLAHPKKAQ
YSDITRPFELCYGDLMGPFTPEADGGFNYVSKITDQFTRWTAVYLLEEKG
CALGSFHLFITSTATLCGGRVIRWRTDKGGDYTSKAFKQFFLEKYITKKF
VATNTPQ*
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mRNA from alignment at H-elongata_contig60729:48..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60729.13611.1 ID=mRNA_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig60729:48..521- (Himanthalia elongata Himel1 dioecious)
AACATCCAACTTTGGCACCGGCAACTGGGCCACCTCAACAGAACGAGTTT GGAACCCATGCAGCGGCACCAAATCAACGGCACCATTGCGGACTGTGACG TCTGCGCTATCGAAAAACCCCAACAATTAGCTCATCCCAAGAAAGCTCAG TATTCCGATATCACCCGGCCTTTCGAGCTTTGTTACGGCGATCTCATGGG CCCTTTCACTCCCGAAGCCGACGGCGGTTTCAACTACGTCAGCAAGATCA CGGACCAGTTCACCAGGTGGACCGCCGTCTACTTACTGGAAGAGAAGGGC TGCGCCTTGGGCTCCTTTCATTTGTTCATCACATCAACTGCCACCCTTTG CGGCGGCCGAGTCATTCGCTGGCGTACGGACAAAGGAGGGGATTACACGA GCAAAGCGTTCAAGCAGTTTTTCTTGGAAAAATACATCACCAAGAAGTTT GTGGCCACCAATACGCCTCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig60729:48..521-

>mRNA_H-elongata_contig60729.13611.1 ID=mRNA_H-elongata_contig60729.13611.1|Name=mRNA_H-elongata_contig60729.13611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig60729:48..521- (Himanthalia elongata Himel1 dioecious)
AACATCCAACTTTGGCACCGGCAACTGGGCCACCTCAACAGAACGAGTTT
GGAACCCATGCAGCGGCACCAAATCAACGGCACCATTGCGGACTGTGACG
TCTGCGCTATCGAAAAACCCCAACAATTAGCTCATCCCAAGAAAGCTCAG
TATTCCGATATCACCCGGCCTTTCGAGCTTTGTTACGGCGATCTCATGGG
CCCTTTCACTCCCGAAGCCGACGGCGGTTTCAACTACGTCAGCAAGATCA
CGGACCAGTTCACCAGGTGGACCGCCGTCTACTTACTGGAAGAGAAGGGC
TGCGCCTTGGGCTCCTTTCATTTGTTCATCACATCAACTGCCACCCTTTG
CGGCGGCCGAGTCATTCGCTGGCGTACGGACAAAGGAGGGGATTACACGA
GCAAAGCGTTCAAGCAGTTTTTCTTGGAAAAATACATCACCAAGAAGTTT
GTGGCCACCAATACGCCTCAGTAAAACATCCAACTTTGGCACCGGCAACT
GGGCCACCTCAACAGAACGAGTTTGGAACCCATGCAGCGGCACCAAATCA
ACGGCACCATTGCGGACTGTGACGTCTGCGCTATCGAAAAACCCCAACAA
TTAGCTCATCCCAAGAAAGCTCAGTATTCCGATATCACCCGGCCTTTCGA
GCTTTGTTACGGCGATCTCATGGGCCCTTTCACTCCCGAAGCCGACGGCG
GTTTCAACTACGTCAGCAAGATCACGGACCAGTTCACCAGGTGGACCGCC
GTCTACTTACTGGAAGAGAAGGGCTGCGCCTTGGGCTCCTTTCATTTGTT
CATCACATCAACTGCCACCCTTTGCGGCGGCCGAGTCATTCGCTGGCGTA
CGGACAAAGGAGGGGATTACACGAGCAAAGCGTTCAAGCAGTTTTTCTTG
GAAAAATACATCACCAAGAAGTTTGTGGCCACCAATACGCCTCAGTAA
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