mRNA_H-elongata_contig60652.13606.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 192 bits (487), Expect = 1.640e-51 Identity = 106/295 (35.93%), Postives = 172/295 (58.31%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ SPT A ++V+++ + D++ A+++++++ E+ +++P ++V RL K++Y L A + K EL+ GF+ S +DP V R+++ VV ++ ++VDD+L A TK E V AL P K LGE ++LGC +RDR A T++ Q YI+++ ERF + +TS IP+ S ++ ++ E E + +RE+VG+LMW A+ TR DIS +A+ + P +HW+ AQK L Y
Sbjct: 939 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPA-------SLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNY 1225
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE) HSP 1 Score: 182 bits (461), Expect = 4.820e-51 Identity = 105/295 (35.59%), Postives = 167/295 (56.61%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK D+ +I K K RLVA+GF+Q G+ Y E+ SPT A ++V+++ + D++ A+++++++ E+ ++LP +V RL K++Y L A + K EL+ GF+ S +DP V R+++ VV ++ ++VDD+L A T E V AL P K LGE ++LGC +RDR A T++ Q YI+++ ERF V +TS IP+ S ++ ++ E E + +RE+VG+LMW A TR DIS +A+ + P +HW+ AQK L Y
Sbjct: 32 VFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSL-AEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNY 318
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 190 bits (483), Expect = 5.460e-51 Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query: 4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
F K +K+G+I +K RLVA+GF Q+ + Y SSSP P A IK++L++ G DV AY A ++EE+ ++LP D ++ + +AIY L +G W L GF+ +ADP VFR ++ VV++IV+YVDD+L+A + + D E+ + +L FP K LGE ++ GC + RD A TL+ Q YI +M ERF V TS IP+ G K E EE + RE +G++MW +T +R D+S +A+ +P HW QK L Y
Sbjct: 788 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1073
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 190 bits (483), Expect = 5.750e-51 Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query: 4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
F K +K+G+I +K RLVA+GF Q+ + Y SSSP P A IK++L++ G DV AY A ++EE+ ++LP D ++ + +AIY L +G W L GF+ +ADP VFR ++ VV++IV+YVDD+L+A + + D E+ + +L FP K LGE ++ GC + RD A TL+ Q YI +M ERF V TS IP+ G K E EE + RE +G++MW +T +R D+S +A+ +P HW QK L Y
Sbjct: 1167 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1452
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 190 bits (483), Expect = 5.790e-51 Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query: 4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
F K +K+G+I +K RLVA+GF Q+ + Y SSSP P A IK++L++ G DV AY A ++EE+ ++LP D ++ + +AIY L +G W L GF+ +ADP VFR ++ VV++IV+YVDD+L+A + + D E+ + +L FP K LGE ++ GC + RD A TL+ Q YI +M ERF V TS IP+ G K E EE + RE +G++MW +T +R D+S +A+ +P HW QK L Y
Sbjct: 1187 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1472
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 190 bits (483), Expect = 5.840e-51 Identity = 109/294 (37.07%), Postives = 160/294 (54.42%), Query Frame = 1
Query: 4 FKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
F K +K+G+I +K RLVA+GF Q+ + Y SSSP P A IK++L++ G DV AY A ++EE+ ++LP D ++ + +AIY L +G W L GF+ +ADP VFR ++ VV++IV+YVDD+L+A + + D E+ + +L FP K LGE ++ GC + RD A TL+ Q YI +M ERF V TS IP+ G K E EE + RE +G++MW +T +R D+S +A+ +P HW QK L Y
Sbjct: 1330 FSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR-------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGY 1615
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.840e-50 Identity = 105/295 (35.59%), Postives = 171/295 (57.97%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ SPT A ++V+++ + D++ A+++++++ E+ +++P ++V RL K++Y L A + K EL+ GF+ S +DP V +++ VV ++ ++VDD+L A TK E V AL P K LGE ++LGC +RDR A T++ Q YI+++ ERF + +TS IP+ S ++ ++ E E + +RE+VG+LMW A+ TR DIS +A+ + P +HW+ AQK L Y
Sbjct: 729 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPA-------SLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNY 1015
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A4V1T029_9SPHI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4V1T029_9SPHI) HSP 1 Score: 180 bits (456), Expect = 2.140e-50 Identity = 106/299 (35.45%), Postives = 172/299 (57.53%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQ--VGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTS--IIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK K+D +G I+++K RLVA+GF Q G+ Y+E+ SP + +++V++++A + Q+DV A+L +++EE+ ++ PE + K+ V +L+K+IY L A W F + + GF+ + D ++ I G+ +++V+YVDD+L+A+ Q L F +K +GEASY +G + RDR+ L Q YI + ERF + K S I+P G K S + P+ + E ++M QI Y IVG+LM+A T TR IS L ++ +PG HW+ A+K L+Y
Sbjct: 13 VFKTKLDSNGNIERHKARLVAKGFTQKDGVDYKETFSPVSKKDSLRIVMAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVTSFGFKENIVDRCIYLKI-SGSKFIILVLYVDDILLATNDLGLLRQTKEFLSKNFEMKDMGEASYVIGIEISRDRSQGWLGLSQKAYINKVLERFKMDKCSAGIVPIQKGDK-FSLNQCPKNELERKQMEQIPYASIVGSLMYAQTCTRPGISFAVGMLGRYQSNPGIDHWKAAKKVLRY 309
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 187 bits (475), Expect = 4.740e-50 Identity = 108/295 (36.61%), Postives = 170/295 (57.63%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQVGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK K D+ G+I K K RLVA+GF+Q G+ Y E+ SPT A ++V+++ + D++ A+++++++ E+ ++LP +V RL K++Y L A + K EL+ GF+ S +DP V R+++ VV ++ ++VDD+L A TK E V AL P K LGE ++LGC +RDR A T++ Q YI+++ ERF V +TS IP+ S ++ ++ E E + +RE+VG+LMW A TR DIS +A+ + P +HW+ AQK L Y
Sbjct: 498 VFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNY 784
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Match: A0A2P6SMQ0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SMQ0_ROSCH) HSP 1 Score: 186 bits (472), Expect = 5.060e-50 Identity = 108/299 (36.12%), Postives = 172/299 (57.53%), Query Frame = 1
Query: 1 VFKRKIDKDGRIKKYKCRLVAQGFRQVKGIHYEESSSPTPVQARIKMVLSIIAALGWKARQLDVDMAYLEADVEEEICVELPEAYRDSKKQ--VGRLRKAIYRLVHAGLLW*KTFGIELEAKGFQISQADPYVFRWILHGTVVVVIVVYVDDLLIASATKRDEEQAVRALCSCFPIKYLGEASYYLGCHVMRDRNARTLKFDQHQYIQTMAERFGVTKTSI--IPSAAGGKALSKSDSPQTDAEFEEMRQIIYREIVGALMWAATMTRLDISLVAHQLAKFNDSPGPTHWRVAQKALQY 885
VFK K D G I+++K RLVA+GF Q +GI++ E+ SP + +++++++A + Q+DV A+L ++EEEI + PE + ++ K+ V RL+K+IY L A W K F + + GF + D V+ ++ G + +++YVDD+L+AS+ + + L S F +K LGEASY LG + RDR L Q YI + +RFG+ + +P + G K L+K+ P+T+ E EM I Y +VG+LM+A TR D+S L++F +PG HW +K L+Y
Sbjct: 297 VFKTKRDVSGNIERHKARLVAKGFTQKEGIYFTETFSPVSTKDSFRIIMALVAHYDMELHQMDVKTAFLNGELEEEIFMVQPEGFIEAGKENMVCRLKKSIYGLKQASRQWYKKFDSVVSSFGFTENLVDECVYLKVV-GNNFIFLILYVDDILLASSNVKLLKDTKAFLSSNFDMKELGEASYVLGIEIKRDRKQGLLGLSQQNYISKILKRFGMETCANGEVPMSKGDK-LTKNQCPKTENEKTEMESIPYARLVGSLMYAQVCTRPDLSFAVGMLSRFQSNPGHEHWTAGKKVLRY 593 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60652.13606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60652.13606.1 >prot_H-elongata_contig60652.13606.1 ID=prot_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MRDRNARTLKFDQHQYIQTMAERFGVTKTSIIPSAAGGKALSKSDSPQTDback to top mRNA from alignment at H-elongata_contig60652:4..888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60652.13606.1 ID=mRNA_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig60652:4..888+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60652:4..888+ >mRNA_H-elongata_contig60652.13606.1 ID=mRNA_H-elongata_contig60652.13606.1|Name=mRNA_H-elongata_contig60652.13606.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig60652:4..888+ (Himanthalia elongata Himel1 dioecious)back to top |