mRNA_H-elongata_contig60648.13605.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60648.13605.1
Unique NamemRNA_H-elongata_contig60648.13605.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60648.13605.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.600e-54
Identity = 98/138 (71.01%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:    4 QAKDVVAEYAISGELEEAFTCLSEIDEAVRWAAVSEAISDGMERKQKHRDALAVVLAAAAKKGALTEDSLLRGINDVLELIPDVCLDVPQATTYVASAVAPLVLAGHLTLGSVVASPCEGLLEAGKAAEFAVAALKEV 417
            + KDVVAE+A+SGEL EA TCL EID  VRWAAVSEA++D  ERKQKHRDAL VVLAA AK GAL+E++LL+G  DVL+++PDVC+DVPQAT YVASA+APLVL GH+ LG +++SPCEGL+E GKAAEFAV A+K+V
Sbjct:  771 KGKDVVAEFAVSGELGEACTCLMEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSEEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAIKQV 908
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BLAST of mRNA_H-elongata_contig60648.13605.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 3.570e-54
Identity = 97/138 (70.29%), Postives = 119/138 (86.23%), Query Frame = 1 
Query:    4 QAKDVVAEYAISGELEEAFTCLSEIDEAVRWAAVSEAISDGMERKQKHRDALAVVLAAAAKKGALTEDSLLRGINDVLELIPDVCLDVPQATTYVASAVAPLVLAGHLTLGSVVASPCEGLLEAGKAAEFAVAALKEV 417
            + KDVVAE+A+SGEL EA TCL EID  VRWAAVSEA++D  ERKQKHRDAL VVLAA AK GAL++++LL+G  DVL+++PDVC+DVPQAT YVASA+APLVL GH+ LG +++SPCEGL+E GKAAEFAV A+K+V
Sbjct:  731 KGKDVVAEFAVSGELGEACTCLKEIDAEVRWAAVSEAVNDSFERKQKHRDALGVVLAAGAKDGALSKEALLKGFGDVLDMVPDVCIDVPQATQYVASALAPLVLGGHVKLGPLLSSPCEGLMEGGKAAEFAVVAMKQV 868
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BLAST of mRNA_H-elongata_contig60648.13605.1 vs. uniprot
Match: A0A8K1FHI0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHI0_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 8.050e-10
Identity = 41/129 (31.78%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:   10 KDVVAEYAISGELEEAFTCLSEIDEAVRWAA-VSEAISDGMERKQKHRDALAVVLAAAAKKGALTEDSLLRGINDVLELIPDVCLDVPQATTYVASAVAPLVLAGHLTLGSVVASPCEGLLEAGKAAEF 393
            K +  EY    +LEEA TC+SE++ +   A  V++ ++ G+E+ +K R+A+A +LA   ++  L  ++    ++++LE   D+ +D+P   TY+A  +AP V AG +++  +V S  + +   GKAA+ 
Sbjct:  734 KGIFEEYVELRDLEEAVTCVSELNSSEHHALIVTQTMNVGLEKGKKEREAVATLLAGLHERQVLDSEAFATSLHELLEFAEDLEIDIPLTLTYIAEMIAPSVAAGGVSVSRLVES-IQHMTYNGKAAKL 861
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60648.13605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKQ5_ECTSI1.600e-5471.01Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A6H5L9P4_9PHAE3.570e-5470.29MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A8K1FHI0_PYTOL8.050e-1031.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60648contigH-elongata_contig60648:26..1150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue6.6e-48
Seed eggNOG ortholog2880.D8LKQ5
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.570331-CDS-H-elongata_contig60648:25..1691622930980.570331-CDS-H-elongata_contig60648:25..169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60648 26..169 -
1691679649.380673-CDS-H-elongata_contig60648:25..1691691679649.380673-CDS-H-elongata_contig60648:25..169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60648 26..169 -
1622930980.5821648-CDS-H-elongata_contig60648:877..11501622930980.5821648-CDS-H-elongata_contig60648:877..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60648 878..1150 -
1691679649.3929625-CDS-H-elongata_contig60648:877..11501691679649.3929625-CDS-H-elongata_contig60648:877..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60648 878..1150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60648.13605.1prot_H-elongata_contig60648.13605.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60648 26..1150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60648.13605.1

>prot_H-elongata_contig60648.13605.1 ID=prot_H-elongata_contig60648.13605.1|Name=mRNA_H-elongata_contig60648.13605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MQAKDVVAEYAISGELEEAFTCLSEIDEAVRWAAVSEAISDGMERKQKHR
DALAVVLAAAAKKGALTEDSLLRGINDVLELIPDVCLDVPQATTYVASAV
APLVLAGHLTLGSVVASPCEGLLEAGKAAEFAVAALKEV
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mRNA from alignment at H-elongata_contig60648:26..1150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60648.13605.1 ID=mRNA_H-elongata_contig60648.13605.1|Name=mRNA_H-elongata_contig60648.13605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig60648:26..1150- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCAAAGGACGTGGTCGCAGAGTACGCAATCTCCGGAGAACTCGA
GGAGGCGTTCACGTGCCTCTCGGAAATCGACGAGGCGGTGCGCTGGGCGG
CCGTGTCCGAGGCCATCAGCGACGGGATGGAACGGAAGCAGAAGCACCGA
GACGCCCTCGCGGTCGTGCTTGCCGCGGCGGCGAAGAAGGGCGCACTAAC
CGAGGATTCCCTGCTAAGGGGCATCAACGACGTGCTGGAGCTGATTCCCG
ACGTTTGCCTCGACGTGCCTCAGGTGATAGAAATAAATGTAGATGGAGCG
TGGGTTGGATTTTGATATCCCGGGGTGCTCGTGTTTGTGGTCGACGAATG
ACTTGGACGCAACGACGCCCTCGAGAGGAGTATGCTGGTTTGCTCGCTGT
AGTTGATTAGCCACGAGTGACGCGAACTTATCCCCCGGGCGTTCTTTTTG
CTTGCTGATGTCATATTGTCTTTTTCTGGCTCTTCGTTCAATCGTTCTCC
GATATGCCCGCGTCCCAATAGCCACATGTAGTTCGTTAACAACTGTGTAT
GTTCTCTTTTTTGTGTGTTTCTTTTTTCTTTGGATATGTCGCTTTTTCCG
AGTATTTGTATTATGCACCATTGCCGTTTCCTTTTGTATTGGAGAGTACC
TGAAACGTTTTTCTCCTTTTTCCGGATGGTGTTTTTTCTACCTTGTGACC
ACGGGCTGGATTTTGACATTAGCTTATGTGAGAATTCAATTAAGACAAAA
AAATCTCTATCTAACGATTTCCTCTCCTCACAAAAATTTACCGTGTCCTT
GAGTTATCAGGCATGTCAAAAATTTAACTTCCTATCCCGCGTCGCTTCTT
CCCCTGGACGCGACGGATCGGTTGACTCGACGCCGCGCAAACTTATCTCC
TCCGTCCCGCCTTCTTTGTCCTCTCGCTGACTGAATGGCTGCCTGCACCT
TCTCTTGTCTTGTCTGCTCTGCGCTGCCAAGGCGACGACCTACGTGGCTT
CCGCCGTGGCCCCGCTGGTCCTGGCAGGGCACCTTACTCTCGGCAGCGTT
GTGGCCTCGCCTTGCGAAGGTTTGCTAGAGGCGGGGAAGGCAGCGGAGTT
TGCGGTGGCGGCTCTGAAGGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig60648:26..1150-

>mRNA_H-elongata_contig60648.13605.1 ID=mRNA_H-elongata_contig60648.13605.1|Name=mRNA_H-elongata_contig60648.13605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig60648:26..1150- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCAAAGGACGTGGTCGCAGAGTACGCAATCTCCGGAGAACTCGA
GGAGGCGTTCACGTGCCTCTCGGAAATCGACGAGGCGGTGCGCTGGGCGG
CCGTGTCCGAGGCCATCAGCGACGGGATGGAACGGAAGCAGAAGCACCGA
GACGCCCTCGCGGTCGTGCTTGCCGCGGCGGCGAAGAAGGGCGCACTAAC
CGAGGATTCCCTGCTAAGGGGCATCAACGACGTGCTGGAGCTGATTCCCG
ACGTTTGCCTCGACGTGCCTCAGATGCAGGCAAAGGACGTGGTCGCAGAG
TACGCAATCTCCGGAGAACTCGAGGAGGCGTTCACGTGCCTCTCGGAAAT
CGACGAGGCGGTGCGCTGGGCGGCCGTGTCCGAGGCCATCAGCGACGGGA
TGGAACGGAAGCAGAAGCACCGAGACGCCCTCGCGGTCGTGCTTGCCGCG
GCGGCGAAGAAGGGCGCACTAACCGAGGATTCCCTGCTAAGGGGCATCAA
CGACGTGCTGGAGCTGATTCCCGACGTTTGCCTCGACGTGCCTCAGGCGA
CGACCTACGTGGCTTCCGCCGTGGCCCCGCTGGTCCTGGCAGGGCACCTT
ACTCTCGGCAGCGTTGTGGCCTCGCCTTGCGAAGGTTTGCTAGAGGCGGG
GAAGGCAGCGGAGTTTGCGGTGGCGGCTCTGAAGGAGGTAGCGACGACCT
ACGTGGCTTCCGCCGTGGCCCCGCTGGTCCTGGCAGGGCACCTTACTCTC
GGCAGCGTTGTGGCCTCGCCTTGCGAAGGTTTGCTAGAGGCGGGGAAGGC
AGCGGAGTTTGCGGTGGCGGCTCTGAAGGAGGTA
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