mRNA_H-elongata_contig60646.13604.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60646.13604.1
Unique NamemRNA_H-elongata_contig60646.13604.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Match: A0A6H5L3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3V4_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.790e-36
Identity = 80/171 (46.78%), Postives = 110/171 (64.33%), Query Frame = 1 
Query:   22 VRWRGPPGYHEASPRLPPDSIDEVRQRLLSSPEYDKLVNRVGVNNPF---GDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSGKLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFSAVADRLVVAPAIHMWGQFRLWYISS 525
             R +GPP +  ++    P+ IDEVRQRL++S +YD++V R+  N+PF   GDK  A    +E E+     +L  TVR  V+V + LV VVL V+  KLPP +L    S AT+I GSP+E VL   PWE  +VL++AA+G VA++ S V DRLVV+PAIH W Q +L  +SS
Sbjct:   43 ARHQGPPRHLMSTAGNSPEDIDEVRQRLMASSKYDEMVGRIEGNSPFLEAGDKGSA----KEGEESPILPVLRQTVRVVVDVAVGLVPVVLVVTYAKLPPPLLEALGSAATAIKGSPLEPVLEALPWEPVVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 209
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BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Match: D8LQA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA5_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.020e-34
Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = 1 
Query:   73 PDSIDEVRQRLLSSPEYDKLVNRVGVNNPF---GDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSGKLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFSAVADRLVVAPAIHMWGQFRLWYISS 525
            P+ IDEVRQRL++S  Y+++V R+  N+PF   GDK  A    +E E+     +L  TVR  V+V I LV VVL V+  KLPP +L    S AT+I GSP+E VL   PWE  +VL++AA+G VA++ S V DRLVV+PAIH W Q +L  +SS
Sbjct:    8 PEDIDEVRQRLMASSNYNEMVGRIEGNSPFLEAGDKGSA----KEGEESPILPVLRQTVRVVVDVAITLVPVVLVVTYAKLPPPLLEALGSAATTIKGSPLEPVLEALPWEPAVVLKWAAQGGVAVLLSPVTDRLVVSPAIHQWVQAKLRSLSS 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60646.13604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3V4_9PHAE5.790e-3646.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA5_ECTSI1.020e-3449.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60646contigH-elongata_contig60646:536..2359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005530.1
Exons2
Model size1184
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60646.13604.1prot_H-elongata_contig60646.13604.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60646 1190..2359 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.4836245-UTR-H-elongata_contig60646:535..11891622930980.4836245-UTR-H-elongata_contig60646:535..1189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60646 536..1189 -
1691679649.3450158-UTR-H-elongata_contig60646:535..11891691679649.3450158-UTR-H-elongata_contig60646:535..1189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60646 536..1189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.5007927-CDS-H-elongata_contig60646:1189..13451622930980.5007927-CDS-H-elongata_contig60646:1189..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60646 1190..1345 -
1691679649.357057-CDS-H-elongata_contig60646:1189..13451691679649.357057-CDS-H-elongata_contig60646:1189..1345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60646 1190..1345 -
1622930980.519942-CDS-H-elongata_contig60646:1987..23591622930980.519942-CDS-H-elongata_contig60646:1987..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60646 1988..2359 -
1691679649.3664436-CDS-H-elongata_contig60646:1987..23591691679649.3664436-CDS-H-elongata_contig60646:1987..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60646 1988..2359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60646.13604.1

>prot_H-elongata_contig60646.13604.1 ID=prot_H-elongata_contig60646.13604.1|Name=mRNA_H-elongata_contig60646.13604.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
RRPRTIRVRWRGPPGYHEASPRLPPDSIDEVRQRLLSSPEYDKLVNRVGV
NNPFGDKNVAGVTEEEAEDPAAFRLLWSTVRFAVNVGIVLVAVVLCVSSG
KLPPSILAPFESVATSISGSPIEQVLATWPWETTLVLRFAAEGLVALIFS
AVADRLVVAPAIHMWGQFRLWYISS*
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mRNA from alignment at H-elongata_contig60646:536..2359-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60646.13604.1 ID=mRNA_H-elongata_contig60646.13604.1|Name=mRNA_H-elongata_contig60646.13604.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1824bp|location=Sequence derived from alignment at H-elongata_contig60646:536..2359- (Himanthalia elongata Himel1 dioecious)
CGACGACCGCGTACAATCCGCGTGCGGTGGCGAGGCCCACCCGGATATCA
CGAGGCGTCCCCGAGACTTCCTCCAGACTCCATCGACGAGGTACGCCAAC
GTCTCCTCTCCTCTCCAGAATACGACAAGCTGGTCAACCGTGTAGGTGTT
AACAATCCGTTCGGGGACAAAAACGTCGCTGGGGTGACTGAGGAAGAAGC
GGAGGATCCGGCGGCGTTTCGGTTGCTTTGGTCGACGGTGCGATTCGCGG
TGAACGTGGGAATCGTCTTGGTGGCGGTGGTTTTGTGTGTCAGCTCTGGG
AAGCTGCCGCCAAGCATCCTCGCGCCTTTCGAATCGGTGGCAACTTCCAT
CAGCGGTTCGCCGATTGAGCAGGTGAGGTACCGTTTGGTTCGTAAAATGC
AGTCAACCCCTCGATCCCCCTCTACCGGAGTTCTGGCGAACGCGCAGCAG
GTCTTACCGCGGAGCGTGGAGCCACGCTACCGTCTACAGTATATTTATTT
CAGGGTGCATGTATGCTCCATTTGGTTAGGCCTCGTGATTACGGTTCGGA
TGACAAGCCTGAGATGGTAGGACGCCGCTGTGGGGGTTTTACGGGTCCCT
CTTCTGGTGTGGCGTGAGTTGTCAACGCGCGCGAAGGCCGCGCGCATCCT
TTTGTACTCCGCAAGCAAAAAGCGGGATTGGTACCCATTTGTAAACAAGG
GCGTAGCTACCAACGGTATGAGGTCAAACGCGTAGAGTTATAACAATGAA
AATATCAGCTTCAACAGCATGCGGATCTTGGAGCACAATAATTGACCAAG
CCTCGCGTAATCGCGGGATTCATGTGTCTAGGCGAGAGTGTAAAGGCATC
GTTGTACTTGTCGAGTGCGCTGCGTGGTGAACGTTACCGAATCGGGTCAT
GTTGTAGACTTCTTTGACCTCTCAACAGCCTGTTATCGATAACCACTGCC
AGGATGTGATACTGAGTGTGTTCTTCATTCCCTACCTCTTTTTAACGTGG
GTATTTTATCTTAGGTGCTGGCGACGTGGCCTTGGGAGACGACGCTTGTA
CTAAGGTTTGCAGCGGAAGGGCTGGTGGCGTTAATTTTTTCCGCCGTGGC
AGATCGTTTGGTAGTCGCTCCTGCGATACACATGTGGGGGCAATTTCGAC
TATGGTACATTTCCTCCTAAAGGTCGTTGCACATTTTAGGCGTTCCTGTT
CACCTTCTCACAGGCGGTCCTTTTTTCATGCCGCACGTGGTACGACCCAT
GAGAGTCCCGGGATCAACCATCATTGTCAAGATCCTCCGTCAAAGGAGAA
ATACATCATGTGTCGATCTTGCGGCTTGAAGTGCTCGGCTCGTCGTTTTG
TCAGCATCTTGAAGCGCTGAGTCGTCGAAGATCAAAGCGTGTGGCTGGGA
GGTGGTCTATCTTATTGAATCGTTTTCTGTTCGGCAAGTGTGCCTCAACC
TTATCCTTGAGCTGGACTCTCCCCCCTTTGAATTGCCACGTGAGTAGGCG
TTTTTTAGACAAAGACGGTCGGCCACTTTCGATTCTCTAGCACTTGTTCA
TGTTGTCGTTATCGATCCGAATGGTTGTGTACATTTATGTGCTAGATTTG
CGGGGGTCGTCCATACAGTGTATTTATAAAGCCGTTCTCTAGACAGTTCG
CAACAACGCTGGTACGCAACAAGCCAATGGCGAATCCAGGTGCGGCGCAC
TGGATGAATGGATGCGTCAAATATTTGGTTGCTTTCTCAGGTATATATTG
CTCTCTTCTCTTGGCAAAAGAAGAATTATAGCCCTCGTGATGAAGATGGT
TATTTGGGTGGAAGGTATCACTCC
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Coding sequence (CDS) from alignment at H-elongata_contig60646:536..2359-

>mRNA_H-elongata_contig60646.13604.1 ID=mRNA_H-elongata_contig60646.13604.1|Name=mRNA_H-elongata_contig60646.13604.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig60646:536..2359- (Himanthalia elongata Himel1 dioecious)
CGACGACCGCGTACAATCCGCGTGCGGTGGCGAGGCCCACCCGGATATCA
CGAGGCGTCCCCGAGACTTCCTCCAGACTCCATCGACGAGGTACGCCAAC
GTCTCCTCTCCTCTCCAGAATACGACAAGCTGGTCAACCGTGTAGGTGTT
AACAATCCGTTCGGGGACAAAAACGTCGCTGGGGTGACTGAGGAAGAAGC
GGAGGATCCGGCGGCGTTTCGGTTGCTTTGGTCGACGGTGCGATTCGCGG
TGAACGTGGGAATCGTCTTGGTGGCGGTGGTTTTGTGTGTCAGCTCTGGG
AAGCTGCCGCCAAGCATCCTCGCGCCTTTCGAATCGGTGGCAACTTCCAT
CAGCGGTTCGCCGATTGAGCAGCGACGACCGCGTACAATCCGCGTGCGGT
GGCGAGGCCCACCCGGATATCACGAGGCGTCCCCGAGACTTCCTCCAGAC
TCCATCGACGAGGTACGCCAACGTCTCCTCTCCTCTCCAGAATACGACAA
GCTGGTCAACCGTGTAGGTGTTAACAATCCGTTCGGGGACAAAAACGTCG
CTGGGGTGACTGAGGAAGAAGCGGAGGATCCGGCGGCGTTTCGGTTGCTT
TGGTCGACGGTGCGATTCGCGGTGAACGTGGGAATCGTCTTGGTGGCGGT
GGTTTTGTGTGTCAGCTCTGGGAAGCTGCCGCCAAGCATCCTCGCGCCTT
TCGAATCGGTGGCAACTTCCATCAGCGGTTCGCCGATTGAGCAGGTGCTG
GCGACGTGGCCTTGGGAGACGACGCTTGTACTAAGGTTTGCAGCGGAAGG
GCTGGTGGCGTTAATTTTTTCCGCCGTGGCAGATCGTTTGGTAGTCGCTC
CTGCGATACACATGTGGGGGCAATTTCGACTATGGTACATTTCCTCCTAA
GTGCTGGCGACGTGGCCTTGGGAGACGACGCTTGTACTAAGGTTTGCAGC
GGAAGGGCTGGTGGCGTTAATTTTTTCCGCCGTGGCAGATCGTTTGGTAG
TCGCTCCTGCGATACACATGTGGGGGCAATTTCGACTATGGTACATTTCC
TCCTAA
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