mRNA_H-elongata_contig60622.13602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60622.13602.1
Unique NamemRNA_H-elongata_contig60622.13602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60622.13602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60622contigH-elongata_contig60622:2403..3180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.3532627-CDS-H-elongata_contig60622:2402..25621622930980.3532627-CDS-H-elongata_contig60622:2402..2562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60622 2403..2562 -
1691679649.2937162-CDS-H-elongata_contig60622:2402..25621691679649.2937162-CDS-H-elongata_contig60622:2402..2562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60622 2403..2562 -
1622930980.3714902-CDS-H-elongata_contig60622:3040..31801622930980.3714902-CDS-H-elongata_contig60622:3040..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60622 3041..3180 -
1691679649.3023105-CDS-H-elongata_contig60622:3040..31801691679649.3023105-CDS-H-elongata_contig60622:3040..3180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60622 3041..3180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60622.13602.1prot_H-elongata_contig60622.13602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60622 2403..3180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60622.13602.1

>prot_H-elongata_contig60622.13602.1 ID=prot_H-elongata_contig60622.13602.1|Name=mRNA_H-elongata_contig60622.13602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MGTRQRFEGPKTLQGALGHSRHSARSTPGPVEAVFPGTQKDCCESLRQGS
CCYGARYPPRDHSGVGCPAPDPLRSTKKREQTRSRSRRRSSCGSNVRCG*
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mRNA from alignment at H-elongata_contig60622:2403..3180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60622.13602.1 ID=mRNA_H-elongata_contig60622.13602.1|Name=mRNA_H-elongata_contig60622.13602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at H-elongata_contig60622:2403..3180- (Himanthalia elongata Himel1 dioecious)
ATGGGTACTAGGCAGCGTTTTGAAGGACCGAAAACCTTGCAGGGAGCCCT
GGGCCATTCTCGACACAGTGCCCGCAGCACCCCAGGACCAGTCGAGGCTG
TATTTCCTGGTACCCAGAAGGACTGTTGCGAGAGTTTGCGGTGAGACGAG
AAATTTGTGATTTTCGCATTGAGATTGAGGGTAGATTGGGGGGGGTTGCC
CAAAGTACTTCCAGGGCGTGCTGCCATGCTCGATAAGCACGATCCAATGC
CGTACACCACGCAAGCACATTTGACATGCGTGTCTCACAGTATGTACATG
AAAAAGAACTGTGGTGTTTGAGCTGGTAGAACAGAAATGCGGCCAAGTCA
AGCATGGTACATGCTATGTTACATGTGGTGTCCCAGTGGATTGCACCTGA
AATGACTCGAATTCAGTTTGGTGTGATACTGCCCTGAAATCTATATCATA
CGCCGCAGACCGGTAGTGCAGACCAGACTAGGTTCAGCAGCAGTAGATCA
AATCTTCAGGGACAAATTGTCAGCTTATTGTTTACTTAATTTACTATAGT
GTACATCAGTAGGATGGTGCGCTTGGCCAGCGATTTCACATTCCGATATC
ATCCTTCCGGTCCCACAGGCAAGGCAGCTGCTGTTATGGAGCCAGATACC
CCCCGAGAGATCACAGCGGCGTAGGGTGTCCTGCGCCAGACCCTTTACGG
AGCACCAAGAAGAGAGAGCAGACTCGCTCAAGATCCAGACGACGCTCGTC
CTGCGGTTCCAATGTGCGTTGTGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60622:2403..3180-

>mRNA_H-elongata_contig60622.13602.1 ID=mRNA_H-elongata_contig60622.13602.1|Name=mRNA_H-elongata_contig60622.13602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig60622:2403..3180- (Himanthalia elongata Himel1 dioecious)
ATGGGTACTAGGCAGCGTTTTGAAGGACCGAAAACCTTGCAGGGAGCCCT
GGGCCATTCTCGACACAGTGCCCGCAGCACCCCAGGACCAGTCGAGGCTG
TATTTCCTGGTACCCAGAAGGACTGTTGCGAGAGTTTGCGATGGGTACTA
GGCAGCGTTTTGAAGGACCGAAAACCTTGCAGGGAGCCCTGGGCCATTCT
CGACACAGTGCCCGCAGCACCCCAGGACCAGTCGAGGCTGTATTTCCTGG
TACCCAGAAGGACTGTTGCGAGAGTTTGCGGCAAGGCAGCTGCTGTTATG
GAGCCAGATACCCCCCGAGAGATCACAGCGGCGTAGGGTGTCCTGCGCCA
GACCCTTTACGGAGCACCAAGAAGAGAGAGCAGACTCGCTCAAGATCCAG
ACGACGCTCGTCCTGCGGTTCCAATGTGCGTTGTGGGTGAGCAAGGCAGC
TGCTGTTATGGAGCCAGATACCCCCCGAGAGATCACAGCGGCGTAGGGTG
TCCTGCGCCAGACCCTTTACGGAGCACCAAGAAGAGAGAGCAGACTCGCT
CAAGATCCAGACGACGCTCGTCCTGCGGTTCCAATGTGCGTTGTGGGTGA
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