mRNA_H-elongata_contig60599.13600.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60599.13600.1
Unique NamemRNA_H-elongata_contig60599.13600.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60599.13600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60599contigH-elongata_contig60599:1507..2343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size789
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60599.13600.1prot_H-elongata_contig60599.13600.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60599 1604..2323 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.1032147-UTR-H-elongata_contig60599:1506..16031622930980.1032147-UTR-H-elongata_contig60599:1506..1603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60599 1507..1603 -
1691679649.1777418-UTR-H-elongata_contig60599:1506..16031691679649.1777418-UTR-H-elongata_contig60599:1506..1603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60599 1507..1603 -
1622930980.1483102-UTR-H-elongata_contig60599:2323..23431622930980.1483102-UTR-H-elongata_contig60599:2323..2343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60599 2324..2343 -
1691679649.2060456-UTR-H-elongata_contig60599:2323..23431691679649.2060456-UTR-H-elongata_contig60599:2323..2343Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60599 2324..2343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.1173956-CDS-H-elongata_contig60599:1603..17691622930980.1173956-CDS-H-elongata_contig60599:1603..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60599 1604..1769 -
1691679649.186651-CDS-H-elongata_contig60599:1603..17691691679649.186651-CDS-H-elongata_contig60599:1603..1769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60599 1604..1769 -
1622930980.131573-CDS-H-elongata_contig60599:1817..23231622930980.131573-CDS-H-elongata_contig60599:1817..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60599 1818..2323 -
1691679649.1959631-CDS-H-elongata_contig60599:1817..23231691679649.1959631-CDS-H-elongata_contig60599:1817..2323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60599 1818..2323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60599.13600.1

>prot_H-elongata_contig60599.13600.1 ID=prot_H-elongata_contig60599.13600.1|Name=mRNA_H-elongata_contig60599.13600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
MLFFTTKCAAYSDVRRFTGNTFGEGSGHGKRAWAALREKLYGYSREAPRA
EHAKINSTRISSRKDPDEFLYELDNRREPLNACDSPEGPTDRQFEGIILQ
ALPSEYERIRTSHFEKPRRRDRWDRRMMSAIHAANLARSGSTTGIAGRGA
AMSVAEDKVVTSFATTANASDNGTNITIGSRADGVNAVGSGAIKRHANHQ
APEAGGVRFTTSLTTATPNVAPD*
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mRNA from alignment at H-elongata_contig60599:1507..2343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60599.13600.1 ID=mRNA_H-elongata_contig60599.13600.1|Name=mRNA_H-elongata_contig60599.13600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig60599:1507..2343- (Himanthalia elongata Himel1 dioecious)
CCAACGAGGATTTGTACAACATGCTGTTCTTCACGACGAAATGTGCAGCA
TACTCCGACGTCCGCCGCTTTACAGGAAACACATTCGGCGAGGGCTCAGG
ACACGGAAAACGAGCGTGGGCCGCCCTTCGCGAAAAGTTATACGGCTATT
CGAGGGAAGCGCCCAGAGCCGAACACGCCAAAATTAACTCCACGCGAATT
AGTTCTCGAAAAGACCCTGATGAGTTCCTGTATGAGCTCGATAATCGCCG
CGAACCCCTCAACGCGTGCGACTCTCCAGAGGGACCAACGGATCGCCAAT
TCGAGGGCATCATCCTCCAAGCTCTTCCGTCGGAGTACGAACGCATTCGA
ACATCCCACTTCGAGAAGCCCCGACGTCGGGATCGTTGGGATCGCCGCAT
GATGTCTGCTATCCATGCGGCCAACCTTGCCCGTTCGGGCTCGACGACGG
GAATTGCGGGGCGCGGGGCTGCTATGTCCGTGGCAGAAGACAAGGTGGTG
ACATCATTTGCCACTACTGCGAACGCGCAGATCATTTCAAGAACACGTGT
CCTCTCCGCGCCAAGCACGAGCAGCAGCGACAATGGAACGAACATCACAA
TCGGCAGCAGAGCGGACGGCGTCAACGCGGTCGGCAGTGGTGCGATAAAA
CGTCACGCCAACCACCAAGCACCGGAGGCAGGTGGTGTTCGTTTCACAAC
ATCACTAACCACGGCGACGCCGAATGTCGCGCCAGATTAAAAGAAAGTGG
CAACGCCCATATCACCGCCACTCAACACACCTGCGTGAAGGGTATCTACA
GCGCGTACGACATCCCCGACCCAAAGAAGGATTCAGA
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Coding sequence (CDS) from alignment at H-elongata_contig60599:1507..2343-

>mRNA_H-elongata_contig60599.13600.1 ID=mRNA_H-elongata_contig60599.13600.1|Name=mRNA_H-elongata_contig60599.13600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig60599:1507..2343- (Himanthalia elongata Himel1 dioecious)
ATGCTGTTCTTCACGACGAAATGTGCAGCATACTCCGACGTCCGCCGCTT
TACAGGAAACACATTCGGCGAGGGCTCAGGACACGGAAAACGAGCGTGGG
CCGCCCTTCGCGAAAAGTTATACGGCTATTCGAGGGAAGCGCCCAGAGCC
GAACACGCCAAAATTAACTCCACGCGAATTAGTTCTCGAAAAGACCCTGA
TGAGTTCCTGTATGAGCTCGATAATCGCCGCGAACCCCTCAACGCGTGCG
ACTCTCCAGAGGGACCAACGGATCGCCAATTCGAGGGCATCATCCTCCAA
GCTCTTCCGTCGGAGTACGAACGCATTCGAACATCCCACTTCGAGAAGCC
CCGACGTCGGGATCGTTGGGATCGCCGCATGATGTCTGCTATCCATGCGG
CCAACCTTGCCCGTTCGGGCTCGACGACGGGAATTGCGGGGCGCGGGGCT
GCTATGTCCGTGGCAGAAGACAAGGTGGTGACATCATTTGCCACTACTGC
GAACGCATGCTGTTCTTCACGACGAAATGTGCAGCATACTCCGACGTCCG
CCGCTTTACAGGAAACACATTCGGCGAGGGCTCAGGACACGGAAAACGAG
CGTGGGCCGCCCTTCGCGAAAAGTTATACGGCTATTCGAGGGAAGCGCCC
AGAGCCGAACACGCCAAAATTAACTCCACGCGAATTAGTTCTCGAAAAGA
CCCTGATGAGTTCCTGTATGAGCTCGATAATCGCCGCGAACCCCTCAACG
CGTGCGACTCTCCAGAGGGACCAACGGATCGCCAATTCGAGGGCATCATC
CTCCAAGCTCTTCCGTCGGAGTACGAACGCATTCGAACATCCCACTTCGA
GAAGCCCCGACGTCGGGATCGTTGGGATCGCCGCATGATGTCTGCTATCC
ATGCGGCCAACCTTGCCCGTTCGGGCTCGACGACGGGAATTGCGGGGCGC
GGGGCTGCTATGTCCGTGGCAGAAGACAAGGTGGTGACATCATTTGCCAC
TACTGCGAACGCCAGCGACAATGGAACGAACATCACAATCGGCAGCAGAG
CGGACGGCGTCAACGCGGTCGGCAGTGGTGCGATAAAACGTCACGCCAAC
CACCAAGCACCGGAGGCAGGTGGTGTTCGTTTCACAACATCACTAACCAC
GGCGACGCCGAATGTCGCGCCAGATTAACAGCGACAATGGAACGAACATC
ACAATCGGCAGCAGAGCGGACGGCGTCAACGCGGTCGGCAGTGGTGCGAT
AAAACGTCACGCCAACCACCAAGCACCGGAGGCAGGTGGTGTTCGTTTCA
CAACATCACTAACCACGGCGACGCCGAATGTCGCGCCAGATTAA
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