mRNA_H-elongata_contig60536.13598.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI) HSP 1 Score: 272 bits (695), Expect = 2.320e-80 Identity = 146/247 (59.11%), Postives = 179/247 (72.47%), Query Frame = 1
Query: 1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEF--------------KQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 699
+V+REG+ LHFGP+ AP+R GT VT+RDAFFKWPVRRKA N+ EM RIKD ++RMALVNNSV+ITV DSAKSK+V+RA ATGS R F+QVF+SDKLS+A+K+ F I S A +S + + RCV + L +NAAFAPC+ LLAGRGG+DGQ V+RRVR+PNASSGQRQELFPVFVLNLECPR EVDIM+DP+KT VEF DW +A+NA +++LL
Sbjct: 135 KVVREGEVLHFGPSRAPVRAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVRDSAKSKVVVRATATGSATRTFAQVFSSDKLSLARKVQIPVCVTSSAVHPLWRIHLPFCICSIGSSSGMVAFPFSTRYDTSQL--RCVPFMVLLL-AVNAAFAPCMALLAGRGGADGQGVVRRVRNPNASSGQRQELFPVFVLNLECPRSEVDIMSDPEKTWVEFSDWAAARNACISMLL 378
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6H5JWV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV7_9PHAE) HSP 1 Score: 230 bits (587), Expect = 7.200e-66 Identity = 132/274 (48.18%), Postives = 155/274 (56.57%), Query Frame = 1
Query: 1 QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKI-----------------------------------------AFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDWPSAKNAPVALLL 699
+V+REG+ LHFGP+ AP R GT VT+RDAFFKWPVRRKA N+ EM RIKD ++RMALVNNSV+ITV DSAKSK V+RA ATGS R F+QVF+SDKLS+A+K+ AF FKQFRITGYLSPPSSTACHWSKEFQ ELFPVFVLNLECPR EVDIM+DP+KT +EF DW +A+NA +++LL
Sbjct: 86 KVVREGEVLHFGPSRAPARAGTIVTLRDAFFKWPVRRKAANEVTEMTRIKDCVSRMALVNNSVAITVQDSAKSKEVVRATATGSATRTFAQVFSSDKLSLARKVEFSVCVTSKAANPRWWIHLPFCICSIGSRSGMVGFSIFHALAFNFKQFRITGYLSPPSSTACHWSKEFQ--------------------------------------------------------ELFPVFVLNLECPRSEVDIMSDPEKTWIEFSDWAAARNACISMLL 303
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI0010A01F08 (DNA mismatch repair protein Mlh3 isoform X1 n=5 Tax=Murinae TaxID=39107 RepID=UPI0010A01F08) HSP 1 Score: 109 bits (273), Expect = 8.510e-24 Identity = 65/207 (31.40%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK+M+ E +++ ++ ++L++ SVS ++ + A +VL+ T + F Q++ K ++I F++K+F +GY+S H++K Q ++VNRR V R +DFL + + P + GS +++ R +AS EL ++V+N++CP E D+ +P KTL+EF +W
Sbjct: 143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEAVSLMHPSVSFSLRNDASGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYISSEG----HYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q8R407_MOUSE (MutL-like protein 3 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=Q8R407_MOUSE) HSP 1 Score: 106 bits (265), Expect = 1.030e-23 Identity = 62/207 (29.95%), Postives = 114/207 (55.07%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK+M+ E +++ ++ ++L++ S+S ++ + +VL+ T + F Q++ K ++I F++K+F +GY+S + H++K Q ++VNRR V R +DFL + + P + GS +++ R +AS EL ++V+N++CP E D+ +P KTL+E W
Sbjct: 143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIELQSW 333
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001114CCDB (DNA mismatch repair protein Mlh3 isoform X3 n=2 Tax=Mus pahari TaxID=10093 RepID=UPI001114CCDB) HSP 1 Score: 108 bits (271), Expect = 1.540e-23 Identity = 63/207 (30.43%), Postives = 116/207 (56.04%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK+M+ E +++ ++ ++L++ S+S ++ + +VL+ T + F Q++ K ++I F++K+F +GY+S + H++K Q ++VNRR V R +DFL + + P + GS +++ R +AS EL ++V+N++CP E D+ +P KTL+EF +W
Sbjct: 143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIHFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: Q68FG1_MOUSE (MutL homolog 3 n=12 Tax=Mus TaxID=10088 RepID=Q68FG1_MOUSE) HSP 1 Score: 108 bits (271), Expect = 1.570e-23 Identity = 63/207 (30.43%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK+M+ E +++ ++ ++L++ S+S ++ + +VL+ T + F Q++ K ++I F++K+F +GY+S + H++K Q ++VNRR V R +DFL + + P + GS +++ R +AS EL ++V+N++CP E D+ +P KTL+EF W
Sbjct: 143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMVLQLPKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSW 333
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI00201ED574 (DNA mismatch repair protein Mlh3-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201ED574) HSP 1 Score: 107 bits (268), Expect = 4.030e-23 Identity = 65/202 (32.18%), Postives = 108/202 (53.47%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVT D F+ PVR+K MN+A E+ RI+ ++ +AL++ SVS ++ + ++L+ + S+++AF +F + K ++++ + F + G++ H SK Q VYVN R V + + K +N L L ++ + P SS +Q + + +FV+N++CP DI DP KTLVEF DW
Sbjct: 143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDITGNILLQTQKSSSMLKAFMHLFGTGKSKCLREVSLQKDCFDVEGFIGKEG----HSSKSLQFVYVNGRLVLKTK-VHKILNHVLRRSLVLKRKGSNNEDSSGTTQTAGPQTSSPLKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: UPI001EE5DAFC (uncharacterized protein LOC124264450 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DAFC) HSP 1 Score: 107 bits (267), Expect = 5.480e-23 Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRRLDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQ-ELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVT D F+ PVR+K MN+A E+ RI+ ++ +AL++ SVS ++ + ++L+ + SV+ AF +F + K ++++ + F++ G++ H SK Q VYVN R V + + K +N L L +G ++ +SS +Q + + +FV+N++CP DI DP KTLVEF DW
Sbjct: 143 GTTVTAHDLFYSLPVRKKNMNEALELERIRYRVEGIALIHPSVSFSLRNDINGNILLQTQKSSSVLTAFMHLFGTGKSKCLREVSLQEGCFQVEGFIGKEG----HCSKSLQFVYVNGRLVLKTK-VHKILNHTLGRSLVLKRKGSNFEGSMGGSQLAGAPSSSPPKQGDKYAMFVINVKCPLDAYDITFDPAKTLVEFKDW 339
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: D4ADG4_RAT (MutL homolog 3 n=10 Tax=Tetrapoda TaxID=32523 RepID=D4ADG4_RAT) HSP 1 Score: 107 bits (266), Expect = 7.260e-23 Identity = 61/207 (29.47%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK+M+ E +++ ++ ++L++ S+S ++ + ++L+ T + F Q++ K ++I +++K+F GY+S + H++K Q ++VNRR V R +DFL + + P + GS +++ R +AS EL ++V+N++CP E D+ +P KTL+EF +W
Sbjct: 143 GTTVTVYNLFYQFPVRRKSMDPRLEFEKVRQRVEALSLMHPSISFSLRNDVSGSMILQLPKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFNGYIS----SEAHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRP-------KNGSASRQMNSSPRHRSAS-----ELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNW 333
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Match: A0A6P3QRE8_PTEVA (DNA mismatch repair protein Mlh3 isoform X1 n=6 Tax=Pteropus TaxID=9401 RepID=A0A6P3QRE8_PTEVA) HSP 1 Score: 103 bits (256), Expect = 1.550e-21 Identity = 62/207 (29.95%), Postives = 113/207 (54.59%), Query Frame = 1
Query: 61 GTTVTVRDAFFKWPVRRKAMNQAAEMLRIKDQIARMALVNNSVSITVVDSAKSKLVLRAAATGSVIRAFSQVFASDKLSIAQKIAFEFKQFRITGYLSPPSSTACHWSKEFQMVYVNRRCVRR------LDFLQKTINAAFAPCLGLLAGRGGSDGQRVIRRVRDPNASSGQRQELFPVFVLNLECPRGEVDIMADPDKTLVEFCDW 663
GTTVTV + F+++PVRRK M+ E +++ +I ++L++ S+S ++ + +VL+ T V F Q++ K ++I F++K+F ++GY+S + H++K Q ++VN+R V + +DFL + + P G +G+ S R+R EL ++V+N++C E D+ +P KTL+EF +W
Sbjct: 143 GTTVTVYNLFYQFPVRRKCMDPRLEFEKVRQRIDALSLMHPSISFSLRNDVSGSMVLQLPKTKDVCSRFCQIYGLSKSQKLREINFKYKKFELSGYIS----SEAHYNKNMQFLFVNKRLVLKTKLHKLIDFLLRKESIICKPKNGSASGQMNSS-----PRLRS-------NPELHGIYVINIQCQFCEYDVCMEPAKTLIEFQNW 333 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60536.13598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60536.13598.1 >prot_H-elongata_contig60536.13598.1 ID=prot_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp QVIREGQTLHFGPANAPLRTGTTVTVRDAFFKWPVRRKAMNQAAEMLRIKback to top mRNA from alignment at H-elongata_contig60536:29..3340- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60536.13598.1 ID=mRNA_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3312bp|location=Sequence derived from alignment at H-elongata_contig60536:29..3340- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60536:29..3340- >mRNA_H-elongata_contig60536.13598.1 ID=mRNA_H-elongata_contig60536.13598.1|Name=mRNA_H-elongata_contig60536.13598.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig60536:29..3340- (Himanthalia elongata Himel1 dioecious)back to top |