mRNA_H-elongata_contig60534.13597.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60534.13597.1
Unique NamemRNA_H-elongata_contig60534.13597.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60534.13597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60534contigH-elongata_contig60534:377..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.8196068-CDS-H-elongata_contig60534:376..7361622930979.8196068-CDS-H-elongata_contig60534:376..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60534 377..736 -
1691679649.057633-CDS-H-elongata_contig60534:376..7361691679649.057633-CDS-H-elongata_contig60534:376..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60534 377..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60534.13597.1prot_H-elongata_contig60534.13597.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60534 377..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60534.13597.1

>prot_H-elongata_contig60534.13597.1 ID=prot_H-elongata_contig60534.13597.1|Name=mRNA_H-elongata_contig60534.13597.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
DVSNVSPPHSRRNPFLVDYALWPFEDNDYDIVCTITNQLVNLDMSLWTPL
LSEDTRRKACIQYRGYCCNCGSTKHSLRWCPAPFRNNFSLLNPEFGTKDP
DGSIFEKWKLRIHTWRQNNA
back to top

mRNA from alignment at H-elongata_contig60534:377..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60534.13597.1 ID=mRNA_H-elongata_contig60534.13597.1|Name=mRNA_H-elongata_contig60534.13597.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig60534:377..736- (Himanthalia elongata Himel1 dioecious)
GATGTGTCAAATGTGTCACCGCCTCACTCTAGGAGAAATCCCTTCTTAGT
TGACTACGCACTCTGGCCCTTTGAAGATAACGACTACGACATTGTTTGCA
CGATAACCAACCAACTCGTGAACTTGGACATGTCACTATGGACACCCCTT
CTCTCCGAAGACACCCGCCGAAAGGCTTGCATCCAGTATAGAGGATACTG
TTGCAACTGCGGCTCCACTAAGCATAGCCTACGTTGGTGCCCCGCCCCCT
TTCGTAACAATTTCTCGCTCCTTAATCCCGAATTTGGAACAAAAGACCCC
GACGGTTCTATATTCGAAAAATGGAAGCTTCGTATACATACATGGCGTCA
AAACAACGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60534:377..736-

>mRNA_H-elongata_contig60534.13597.1 ID=mRNA_H-elongata_contig60534.13597.1|Name=mRNA_H-elongata_contig60534.13597.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig60534:377..736- (Himanthalia elongata Himel1 dioecious)
GATGTGTCAAATGTGTCACCGCCTCACTCTAGGAGAAATCCCTTCTTAGT
TGACTACGCACTCTGGCCCTTTGAAGATAACGACTACGACATTGTTTGCA
CGATAACCAACCAACTCGTGAACTTGGACATGTCACTATGGACACCCCTT
CTCTCCGAAGACACCCGCCGAAAGGCTTGCATCCAGTATAGAGGATACTG
TTGCAACTGCGGCTCCACTAAGCATAGCCTACGTTGGTGCCCCGCCCCCT
TTCGTAACAATTTCTCGCTCCTTAATCCCGAATTTGGAACAAAAGACCCC
GACGGTTCTATATTCGAAAAATGGAAGCTTCGTATACATACATGGCGTCA
AAACAACGCCGATGTGTCAAATGTGTCACCGCCTCACTCTAGGAGAAATC
CCTTCTTAGTTGACTACGCACTCTGGCCCTTTGAAGATAACGACTACGAC
ATTGTTTGCACGATAACCAACCAACTCGTGAACTTGGACATGTCACTATG
GACACCCCTTCTCTCCGAAGACACCCGCCGAAAGGCTTGCATCCAGTATA
GAGGATACTGTTGCAACTGCGGCTCCACTAAGCATAGCCTACGTTGGTGC
CCCGCCCCCTTTCGTAACAATTTCTCGCTCCTTAATCCCGAATTTGGAAC
AAAAGACCCCGACGGTTCTATATTCGAAAAATGGAAGCTTCGTATACATA
CATGGCGTCAAAACAACGCC
back to top