mRNA_H-elongata_contig60489.13592.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: D8LSB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB1_ECTSI) HSP 1 Score: 436 bits (1122), Expect = 5.250e-145 Identity = 199/313 (63.58%), Postives = 237/313 (75.72%), Query Frame = 1
Query: 1 MYYSNQASDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPTCNDFGSCKDMEYFASTATTNGETTP-YTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTDVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATPW 936
+Y AS LNP L S GTK +ECS+RG CN TGHCMCYSKF SSDG G GD+GDCGYYD DPPTNC+ ATP+WGS +++CSG G+CD T RCNCT+ Y GGACEL++C+S VAWFEEA W+ +S G +GGRT ++CSAGGVCDESTG+C+CRS +F G C +M CPTCND G+CKDMEYFA+T +NGE YTYDLWD+ K+RSC C R+ V F S T+RGPYALADTDS+G++CSL RCPTGDH HT GVTD+Q VNCT GVFTLSF G TT E++Y ++ EAALEATPW
Sbjct: 364 VYAKGHASGLNPHLFSQIGTKDAKECSDRGSCNRQTGHCMCYSKFSSSDGMGGEGDMGDCGYYDSYDPPTNCTTATPMWGSTSALCSGVGNCDQETWRCNCTESYTGGACELRDCDSGVAWFEEAAWNVSS-GAEGGRTGLSVQCSAGGVCDESTGICSCRSGMFAGDACEVMDCPTCNDVGTCKDMEYFAATIISNGEAQEGYTYDLWDANKMRSCWCNRSMTVDNMFSGISTTHRGPYALADTDSHGYDCSLGRCPTGDHYHTPGVTDIQRVNCTAGLGVFTLSFRGETTVELDYFISAAGLEAALEATPW 675
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: F0XX10_AURAN (EGF-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XX10_AURAN) HSP 1 Score: 186 bits (473), Expect = 7.330e-50 Identity = 129/347 (37.18%), Postives = 166/347 (47.84%), Query Frame = 1
Query: 22 SDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDP---------------------ADPPTNCSIATPLWGS--ATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDEL-LRCSAGGVCDESTGVCNCRSD--IFTGTDCALMACPT-----CNDFGSCKDMEYFASTATT---NGETTPYTY-DLWDSKKIRSCSCER------THGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTDVQLVNCTGAS-GVFTLSFHGATT-TEMNYDVTVEDFEAALEATP 933
S ++ + SV GT+ ECSNRG C+ G C CY+ F SSDG+G +G + DCGY P A+ P C ATPLW + ++CSG G CD CNCT GY G ACE K C + AW+ EA VG D G CS G+CD S+G C+C D + G C MAC C FG C M A A +GE Y + WD+ + C C TH G P YRGP+A T G+ CS A CPTGD+ +T GV +VQ +NC+ A+ G F ++F GA + + + + EA LEA P
Sbjct: 309 STVHAAVCSVAGTRERAECSNRGVCDRSVGVCDCYTGFGSSDGRGGAGLVADCGYLSPNASVAYEYPRDYARWADAAGGAEGP--CPRATPLWNTNLPPTVCSGVGVCD-ADKFCNCTAGYEGSACEYKTCPTGRAWWGEA------VGDDPGDAHRPGATCSNKGLCDRSSGNCDCDDDFGVVGGDACGDMACEVNSTRECGAFGHCATMAELAQNALLFGDHGEVRRVNYSEPWDADLVTGCKCHASTSDYPTHDFGAD-PVNQLQYRGPFAYTYTGWTGYQCSHAFCPTGDNPYTWGVNEVQALNCSLATDGAFNVTFRGAPEPVRVPWWASAAELEARLEALP 645
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A024U9M1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9M1_9STRA) HSP 1 Score: 155 bits (393), Expect = 3.760e-39 Identity = 105/327 (32.11%), Postives = 144/327 (44.04%), Query Frame = 1
Query: 10 SNQASDLNPQLR---SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYD-------LWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHT-------VGVTDVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
++ ++ ++P L + EGTK CSNRG C+ +G C C+S FFSSDG G+ G GDCG+ A T C A CSG G C T C C G+ GG C + C AWF+ + G L+ CS G+CD S G C C FTG C M CP C+ G+C+ ++ A + NG+ +TY WD +++ C C + GF+CS CPTGD T +Q+V CTG +G FTL F +T + + +T + AAL A P
Sbjct: 280 THSSAGMSPTLTITTATEGTKENAFCSNRGLCDRTSGICACFSNFFSSDGNGNIGTRGDCGFAVAA--ITQCP-------GAVLACSGHGICQGPPTYTCICASGFQGGDCSERICPVGKAWFDMPHSPQGAHG--------LVECSNAGLCDRSKGECVC-DPRFTGASCNRMVCPNECSGHGTCQTIQSMAGRSVINGDPLRFTYGSIPNHFPTWDFDQMQGCVCNPGYA------------------------GFDCSKLTCPTGDDPVTRVDANNRPQTNTIQVVQCTGTTGTFTLGFRAQSTPALPFSITPANLAAALHALP 564
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: W4G505_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G505_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.270e-38 Identity = 104/312 (33.33%), Postives = 136/312 (43.59%), Query Frame = 1
Query: 46 SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETT-------PYTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTD-------VQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
+V+GTK CSNRG C+ +G C C+ FFSSDG G+ G GDCGY S T GS + CSG G C T C C G+ GG C + C AWF+ + D L CS G CD S G C C FTG C M CP C+ G+C+ ++ A + NG+ P Y WD +++ C C + TD F+CS CPTGD T T +Q+V C G +G FTL F G TT +++ ++ AL+A P
Sbjct: 286 AVDGTKENAFCSNRGLCDRTSGICACFMSFFSSDGNGNIGTRGDCGYA--------FSAITQCPGSVLA-CSGHGICQGPPTYTCICASGFQGGDCSERICPVGKAWFD--------MPFDAQGAHALAECSNAGTCDRSKGECVC-DPRFTGASCNRMVCPNECSGHGTCQTIQSMAGLSVINGDPVKLTYGAIPNNYPTWDFDQLQGCVCNPGY---------------------TD---FDCSKFTCPTGDDPVTRMDTKNRPQANTIQVVQCIGTTGTFTLGFRGQTTPALSFSISAASLTVALQALP 555
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A1V9YCU9_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCU9_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.860e-35 Identity = 107/317 (33.75%), Postives = 132/317 (41.64%), Query Frame = 1
Query: 46 SVEGTKVVQECSNRGYCNHLTGHCMCY----SKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSI-CSGAGDCD-MVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-------CNDFGSCKDMEYFASTATTNGETTPYTYDL-------WDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVTD-VQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEATP 933
SV GTK CSNRGYCN LTG C CY + SSDG G G GDCG P P+ G + CSG G C C C G+ G C L+ C +WF S+N++ L+ CS G CD ++G C C + FTG C M CP C G C + A+ T +G +TY WD+ KI+ C C+ G G +CSL CPTGD T G D VQ V CT G+F L F G T + ++ V D AL P
Sbjct: 296 SVVGTKESLPCSNRGYCNSLTGVCSCYLYPMPGYRSSDGYGREGLRGDCGA-----PDNRNFYGGPIAGCPGYLPCSGHGMCTGSPAYACKCAAGWTSGDCSLRTCPLGYSWFNLP--SANNIAHQ-----SLVACSNAGECDPTSGRCECFAP-FTGAACEFMRCPQGPDNVAPCAKHGVCLTLSELAAATTIDGVPAQFTYGATPNNPLTWDALKIQGCKCDAGFG------------------------GHDCSLRLCPTGDDPVTTGQVDAVQRVQCTAIGGIFQLGFRGFFTDALAFNAPVGDVADALLRLP 575
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A7S4DCI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCI4_HETAK) HSP 1 Score: 126 bits (316), Expect = 1.350e-28 Identity = 98/309 (31.72%), Postives = 132/309 (42.72%), Query Frame = 1
Query: 46 SVEGTKVVQECSNRGYCNHLTGHCMCY----SKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDE-----LLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVG-VTDVQLVNCTGASGVFTL----SFHGATTTE-MNYDVTVEDFEAALE 924
S K C++RG+C+ G C CY +F SSDG G++G GDCG DP D T G T C+ G C+ + RC C +G+ GG C + C AWF D R DE ++ CSA G+CD S+G C C +D F G C +ACP CN G C + A + W +G + P T + R L D +G +C+ CP GD + G + QLV C G FTL SF+ TTE + + + + AALE
Sbjct: 179 SQASEKENSPCADRGWCSSAEGTCECYFYPLPRFRSSDGNGNAGVRGDCGSMDPIDDGE----VTECTGEIT--CNTRGACNEDSYRCECEEGWMGGDCSERTCPKGKAWF------------DFPRADEEAHTAVVECSARGLCDRSSGECEC-ADNFYGAACEHLACPNDCNGNGQCMSVRELAGKISEGA---------W------------VYGAALNSPATWDADRVHGCLCDEGYWGHDCARRTCPHGDDPGSYGQAKETQLVECHAGGGAFTLTYQSSFYTTKTTEGIPANSSALEVAAALE 447
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A5A8CNF0_CAFRO (Uncharacterized protein n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8CNF0_CAFRO) HSP 1 Score: 123 bits (308), Expect = 1.680e-27 Identity = 91/291 (31.27%), Postives = 121/291 (41.58%), Query Frame = 1
Query: 46 SVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMVTMRCNCTDGYAGGACELKECNSAVAWFEEA--------------------TWSSNSVGTDGGR------TDELLRCSAGGVCDESTGVCNCRSDIFTGTDCA----------------LMACPTCNDFGSCKDMEYFASTATTNGETTPYT-----YDLWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTG 777
S +G++V+QECS RG+CN +TG C CYS++ SD G D G D CS +T + C G G C T C CT G+ G ACE + C +A AWF+EA T S++ V R + L C GVC+ ++GVC C ++ FTG+DC C+ GSC M A+ + Y YD WD K CSCER Y GPY + D +G +C + CP G
Sbjct: 705 SRDGSRVLQECSGRGFCNRVTGECACYSRWGDSDRVGVHQDAGFGQRKD-------CSRSTAHINDCPASCLGRGLCRGPTFVCACTSGFTGYACESRTCPTAAAWFDEARPVPDTGNTTSFVNSAVLSATDSASGVTYSAHREQGLTSSHRLATCGGQGVCNGASGVCVC-AEGFTGSDCGSTXXXXXXXXXXXXXXXXXXXXCSGHGSCISMGQAANASRDAITKESYVGEVLPYDEWDKDKNFGCSCERA------------AYTGPYHDSRGDYFGPDCKRSTCPAG 975
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A7S2BPD4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BPD4_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.420e-22 Identity = 79/249 (31.73%), Postives = 108/249 (43.37%), Query Frame = 1
Query: 256 CSGAGDCDMVT--MRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT------CNDFGSCKDMEYFASTATTNGETTPYTYD--------LWDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALAD-TDSYGFNCSLARCPTGDHIHTVGVT---------DVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALE 924
C G G C + +C C DGY G C++ EC + AWF+EA ++++ CS G C+ TG C C D F G C M+CPT C+ G C M A TNG TP +Y WD+ KI C C+ S Y+ P LA+ +D G++CS CP+G VG ++Q + CT SG FTLSF +T + + T + LE
Sbjct: 127 CYGHGYCAGLETDFKCECDDGYFGN-CQMLECPTGPAWFDEAIMNNDA--------HNEAECSNMGTCEYKTGTCACN-DGFEGAACERMSCPTDELGNVCSGHGQCLSMADAAKLTRTNGVLTPISYGGFNMSNATAWDADKIFGCVCD------------SKGYQLPGQLANLSDWTGYDCSRRTCPSGTKRSNVGPGQNNAYNSSFEIQNMTCTATSGTFTLSFRSESTEPIASNATKAILKQRLE 353
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: A0A482R5Z6_9ARCH (EGF-like domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R5Z6_9ARCH) HSP 1 Score: 103 bits (258), Expect = 1.370e-21 Identity = 59/145 (40.69%), Postives = 77/145 (53.10%), Query Frame = 1
Query: 49 VEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGKGSSGDLGDCGYYDPADPPTNCSIATPLWGSATSICSGAGDCDMV-TMRCNCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNC 480
EG+ CSNRG C+ TG C C++ F SDG G++G DCG+ A + C + G ++ C+G G C T C C GYAGGACE +EC AW++EA S+N T CSA GVC+ +TGVC C
Sbjct: 258 TEGSTESAACSNRGVCDTTTGECTCFTGFGPSDGSGATGTRPDCGFASLA--TSACPVPPLALGLGSAECAGRGICSGAPTYTCTCFTGYAGGACEERECPRGRAWWDEAV-SANVAHTT------YQECSARGVCNRATGVCTC 393
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Match: W4FCZ9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCZ9_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.470e-21 Identity = 84/256 (32.81%), Postives = 110/256 (42.97%), Query Frame = 1
Query: 226 TPLWGSATSI--------CSGAGDCDMVTMRC--NCTDGYAGGACELKECNSAVAWFEEATWSSNSVGTDGGRTDELLRCSAGGVCDESTGVCNCRSDIFTGTDCALMACPT-CNDFGSCKDMEYFASTATTNGETTPYTYDL-WDSKKIRSCSCERTHGVGIFFPQTSNTYRGPYALADTDSYGFNCSLARCPTGDHIHTVGVT----------DVQLVNCTGASGVFTLSFHGATTTEMNYDVTVEDFEAALEA 927
T LW TS+ CSG G C +V C C G+AG C + C +W SS + TD ++ CS GVCDES+GVC C FTG C +ACP C++ G C+ ++ F +T G P Y WDS + C C YG +CS RCPTGD T G T + Q V+C+ G FTLSF G TT +N + V+ + L+A
Sbjct: 8 TVLWTVLTSVAGGCCNNDCSGRGKCTIVGSGCICQCFAGFAGADCSRRACPVGKSW------SSFAAATDVAHLPDV--CSNRGVCDESSGVCQCDPG-FTGAACDRLACPLGCSNRGECRSIK-FQATQKDKGMPPPVVYTANWDSDMVYGCLCH------------------------DGFYGADCSQRRCPTGDDPLT-GFTGDPIFGQQFNEKQSVSCSSTGGSFTLSFRGQTTVPINSNDPVDAMTSKLQA 228 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60489.13592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60489.13592.1 >prot_H-elongata_contig60489.13592.1 ID=prot_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp MYYSNQASDLNPQLRSVEGTKVVQECSNRGYCNHLTGHCMCYSKFFSSDGback to top mRNA from alignment at H-elongata_contig60489:1210..3266+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60489.13592.1 ID=mRNA_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2057bp|location=Sequence derived from alignment at H-elongata_contig60489:1210..3266+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60489:1210..3266+ >mRNA_H-elongata_contig60489.13592.1 ID=mRNA_H-elongata_contig60489.13592.1|Name=mRNA_H-elongata_contig60489.13592.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig60489:1210..3266+ (Himanthalia elongata Himel1 dioecious)back to top |