mRNA_H-elongata_contig60473.13590.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60473.13590.1
Unique NamemRNA_H-elongata_contig60473.13590.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60473.13590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60473contigH-elongata_contig60473:2970..3200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LKA6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930979.0658646-CDS-H-elongata_contig60473:2969..32001622930979.0658646-CDS-H-elongata_contig60473:2969..3200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60473 2970..3200 -
1691679648.733072-CDS-H-elongata_contig60473:2969..32001691679648.733072-CDS-H-elongata_contig60473:2969..3200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60473 2970..3200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60473.13590.1prot_H-elongata_contig60473.13590.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60473 2970..3200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60473.13590.1

>prot_H-elongata_contig60473.13590.1 ID=prot_H-elongata_contig60473.13590.1|Name=mRNA_H-elongata_contig60473.13590.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
ACANGRVEQADTLLRYGVHPNQVTASGITALALACHGGHAKCVRLLVGLP
RSLGGPMMSGKPLPAAANPWIAAPPDG
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mRNA from alignment at H-elongata_contig60473:2970..3200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60473.13590.1 ID=mRNA_H-elongata_contig60473.13590.1|Name=mRNA_H-elongata_contig60473.13590.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig60473:2970..3200- (Himanthalia elongata Himel1 dioecious)
GCGTGCGCGAACGGCCGGGTAGAGCAGGCGGACACCCTCCTGAGGTACGG
TGTCCACCCGAACCAGGTAACCGCGTCGGGCATCACCGCGCTCGCGCTTG
CCTGCCACGGCGGCCACGCAAAGTGCGTCCGACTCCTCGTGGGGCTACCG
CGCAGTCTCGGGGGGCCGATGATGTCCGGGAAGCCGCTACCCGCCGCTGC
TAACCCGTGGATCGCCGCACCTCCCGACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig60473:2970..3200-

>mRNA_H-elongata_contig60473.13590.1 ID=mRNA_H-elongata_contig60473.13590.1|Name=mRNA_H-elongata_contig60473.13590.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig60473:2970..3200- (Himanthalia elongata Himel1 dioecious)
GCGTGCGCGAACGGCCGGGTAGAGCAGGCGGACACCCTCCTGAGGTACGG
TGTCCACCCGAACCAGGTAACCGCGTCGGGCATCACCGCGCTCGCGCTTG
CCTGCCACGGCGGCCACGCAAAGTGCGTCCGACTCCTCGTGGGGCTACCG
CGCAGTCTCGGGGGGCCGATGATGTCCGGGAAGCCGCTACCCGCCGCTGC
TAACCCGTGGATCGCCGCACCTCCCGACGGTGCGTGCGCGAACGGCCGGG
TAGAGCAGGCGGACACCCTCCTGAGGTACGGTGTCCACCCGAACCAGGTA
ACCGCGTCGGGCATCACCGCGCTCGCGCTTGCCTGCCACGGCGGCCACGC
AAAGTGCGTCCGACTCCTCGTGGGGCTACCGCGCAGTCTCGGGGGGCCGA
TGATGTCCGGGAAGCCGCTACCCGCCGCTGCTAACCCGTGGATCGCCGCA
CCTCCCGACGGT
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