mRNA_H-elongata_contig60412.13581.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60412.13581.1
Unique NamemRNA_H-elongata_contig60412.13581.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60412.13581.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.270e-29
Identity = 57/86 (66.28%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 MLKELGIDRSVTCMTTNTAANMKKGVMVDMSG-VRWLGCSCHKVELTVQKFVNHRSLKQTLVIFTKVAGHLHKSALSQQGFENAQR 255
            MLK LGI+  V  MTT+TAANMK GV+V M+  ++WLGC CHK ELTVQKFVN   LK+TL  FTKVAGHLHKSALS   F  AQ+
Sbjct:    1 MLKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 86
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BLAST of mRNA_H-elongata_contig60412.13581.1 vs. uniprot
Match: A0A6H5L2K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.340e-25
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MLKELGIDRSVTCMTTNTAANMKKGVMVDMSGVRWLGCSCHKVELTVQKFVNHRSLKQTLVIFTKVAGHLHKSALSQQGFENAQR 255
            MLKELGI ++VTCMTT+TAA MK G++  M G+ WLG +CHK E TVQ FV    LK+++  FTKVA HL KSAL +  F++AQ+
Sbjct:    3 MLKELGIAKTVTCMTTDTAAKMKNGIVEHMPGMEWLGRACHKAERTVQNFVGPPGLKKSISAFTKVATHLQKSALWKGVFQDAQQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60412.13581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6P8_ECTSI1.270e-2966.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K9_9PHAE2.340e-2557.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60412contigH-elongata_contig60412:2548..2802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.294069-CDS-H-elongata_contig60412:2547..28021622930978.294069-CDS-H-elongata_contig60412:2547..2802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60412 2548..2802 -
1691679648.4423623-CDS-H-elongata_contig60412:2547..28021691679648.4423623-CDS-H-elongata_contig60412:2547..2802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60412 2548..2802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60412.13581.1prot_H-elongata_contig60412.13581.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60412 2548..2802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60412.13581.1

>prot_H-elongata_contig60412.13581.1 ID=prot_H-elongata_contig60412.13581.1|Name=mRNA_H-elongata_contig60412.13581.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
MLKELGIDRSVTCMTTNTAANMKKGVMVDMSGVRWLGCSCHKVELTVQKF
VNHRSLKQTLVIFTKVAGHLHKSALSQQGFENAQR
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mRNA from alignment at H-elongata_contig60412:2548..2802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60412.13581.1 ID=mRNA_H-elongata_contig60412.13581.1|Name=mRNA_H-elongata_contig60412.13581.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig60412:2548..2802- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAAGAACTTGGAATTGACCGGTCTGTGACGTGCATGACTACCAA
CACGGCTGCTAACATGAAGAAGGGGGTCATGGTGGACATGTCTGGTGTAC
GGTGGCTGGGATGTTCGTGCCATAAGGTTGAGCTCACAGTGCAGAAGTTC
GTCAACCACCGCAGCCTGAAGCAGACACTTGTCATCTTCACTAAGGTTGC
GGGGCACCTACACAAGTCTGCGCTGTCGCAGCAGGGGTTCGAGAACGCGC
AGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig60412:2548..2802-

>mRNA_H-elongata_contig60412.13581.1 ID=mRNA_H-elongata_contig60412.13581.1|Name=mRNA_H-elongata_contig60412.13581.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig60412:2548..2802- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAAGAACTTGGAATTGACCGGTCTGTGACGTGCATGACTACCAA
CACGGCTGCTAACATGAAGAAGGGGGTCATGGTGGACATGTCTGGTGTAC
GGTGGCTGGGATGTTCGTGCCATAAGGTTGAGCTCACAGTGCAGAAGTTC
GTCAACCACCGCAGCCTGAAGCAGACACTTGTCATCTTCACTAAGGTTGC
GGGGCACCTACACAAGTCTGCGCTGTCGCAGCAGGGGTTCGAGAACGCGC
AGAGGATGCTGAAAGAACTTGGAATTGACCGGTCTGTGACGTGCATGACT
ACCAACACGGCTGCTAACATGAAGAAGGGGGTCATGGTGGACATGTCTGG
TGTACGGTGGCTGGGATGTTCGTGCCATAAGGTTGAGCTCACAGTGCAGA
AGTTCGTCAACCACCGCAGCCTGAAGCAGACACTTGTCATCTTCACTAAG
GTTGCGGGGCACCTACACAAGTCTGCGCTGTCGCAGCAGGGGTTCGAGAA
CGCGCAGAGG
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