mRNA_H-elongata_contig60366.13577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60366.13577.1
Unique NamemRNA_H-elongata_contig60366.13577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 61.6 bits (148), Expect = 1.450e-10
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   10 MDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWR 183
            M D+RLPK LM+GE++ G   V GQ K + +CL   LK  GI  D W + AQD   WR
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWR 58
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D)

HSP 1 Score: 59.3 bits (142), Expect = 1.060e-8
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWR 183
            V RM D+RLPK LM+GE++ G   V GQ K + +CL   LK  GI  D     AQD   WR
Sbjct:  527 VIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWR 587
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: C3ZFY5_BRAFL (C2H2-type domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZFY5_BRAFL)

HSP 1 Score: 56.6 bits (135), Expect = 3.430e-8
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWRK 186
            V RMDD RLPK L++GE+  G   V      + + L   LK F I  D W +AA D  +WR+
Sbjct:   59 VRRMDDHRLPKILLYGELAEGKRHVGRPKLRYKDSLKATLKDFSIPVDSWELAASDRSQWRR 120
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A7M3QZ15_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QZ15_SPIER)

HSP 1 Score: 57.8 bits (138), Expect = 3.610e-8
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWRK 186
            + RMDD RLPK L++G++  G+ R  GQ + + + L   LK   INP  W   A D   WR+
Sbjct:    9 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTDWEELALDRPTWRR 70
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 57.8 bits (138), Expect = 3.720e-8
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWRK 186
            + RMDD RLPK L++G++  G+ R  GQ + + + L   LK   INP  W   A D   WR+
Sbjct:  425 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRR 486
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BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 57.0 bits (136), Expect = 6.710e-8
Identity = 24/62 (38.71%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWRK 186
            + RMDD RLPK L++G+++ G+ R  GQ + + + L   LK   +NP  W   A D   WR+
Sbjct:    9 LVRMDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRR 70
[Close]
BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A7M3QR85_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QR85_SPIER)

HSP 1 Score: 56.6 bits (135), Expect = 9.060e-8
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWRK 186
            + RMDD RLPK L++G++  G+ R  GQ + + + L   LK   INP  W   A+D   WR+
Sbjct:  250 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKFSLKRLQINPANWEDLARDRPTWRR 311
[Close]
BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A7M3VK05_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3VK05_SPIER)

HSP 1 Score: 56.2 bits (134), Expect = 1.270e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWR 183
            + RMDD RLPK L++G++  G+ R  GQ + + + L   LK   INP  W   A D   WR
Sbjct:  159 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKRLQINPTNWDELALDRPTWR 219
[Close]
BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A7M3PV87_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PV87_SPIER)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWR 183
            + RMDD RLPK L++G++  G+ R  GQ + + + L   LK   INP  W   A D   WR
Sbjct:  715 LVRMDDERLPKRLIYGDVATGSRRQGGQIRRYKDTLKSSLKYLQINPTNWEELAFDRPTWR 775
[Close]
BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 56.2 bits (134), Expect = 1.320e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:    1 VARMDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIAAQDEGRWR 183
            + RM DTRLPK L++ E++ G   V GQ K + + L   LK F I+   W  AAQ+   WR
Sbjct:  302 LVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWR 362
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60366.13577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00165228C01.450e-1048.28uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
UPI00035A230D1.060e-847.54uncharacterized protein LOC101847595 n=1 Tax=Aplys... [more]
C3ZFY5_BRAFL3.430e-841.94C2H2-type domain-containing protein n=2 Tax=Branch... [more]
A0A7M3QZ15_SPIER3.610e-840.32Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3PXV5_SPIER3.720e-840.32Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654HMC6_9CEST6.710e-838.71Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A7M3QR85_SPIER9.060e-840.32Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3VK05_SPIER1.270e-740.98Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3PV87_SPIER1.310e-740.98Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A6P4ZXC7_BRABE1.320e-742.62protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60366contigH-elongata_contig60366:3403..3597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.8
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.0998654-CDS-H-elongata_contig60366:3402..35881622930978.0998654-CDS-H-elongata_contig60366:3402..3588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60366 3403..3588 -
1691679648.380705-CDS-H-elongata_contig60366:3402..35881691679648.380705-CDS-H-elongata_contig60366:3402..3588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60366 3403..3588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930978.1133947-UTR-H-elongata_contig60366:3588..35971622930978.1133947-UTR-H-elongata_contig60366:3588..3597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60366 3589..3597 -
1691679648.3974795-UTR-H-elongata_contig60366:3588..35971691679648.3974795-UTR-H-elongata_contig60366:3588..3597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60366 3589..3597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60366.13577.1prot_H-elongata_contig60366.13577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60366 3403..3588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60366.13577.1

>prot_H-elongata_contig60366.13577.1 ID=prot_H-elongata_contig60366.13577.1|Name=mRNA_H-elongata_contig60366.13577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MDDTRLPKCLMFGEIMGGTGRVEGQGKEWMECLLEGLKVFGINPDQWTIA
AQDEGRWRKRT*
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mRNA from alignment at H-elongata_contig60366:3403..3597-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60366.13577.1 ID=mRNA_H-elongata_contig60366.13577.1|Name=mRNA_H-elongata_contig60366.13577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig60366:3403..3597- (Himanthalia elongata Himel1 dioecious)
GTGGCACGCATGGACGACACGAGACTGCCGAAGTGCCTAATGTTCGGAGA
AATCATGGGGGGCACGGGTCGCGTGGAGGGACAGGGAAAAGAGTGGATGG
AGTGTCTTCTGGAAGGCCTCAAAGTTTTCGGTATCAACCCCGACCAGTGG
ACGATTGCAGCCCAGGACGAGGGGAGGTGGCGCAAGAGGACGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig60366:3403..3597-

>mRNA_H-elongata_contig60366.13577.1 ID=mRNA_H-elongata_contig60366.13577.1|Name=mRNA_H-elongata_contig60366.13577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig60366:3403..3597- (Himanthalia elongata Himel1 dioecious)
ATGGACGACACGAGACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGGG
GGGCACGGGTCGCGTGGAGGGACAGGGAAAAGAGTGGATGGAGTGTCTTC
TGGAAGGCCTCAAAGTTTTCGGTATCAACCCCGACCAGTGGACGATTGCA
GCCCAGGACGAGGGGAGGTGGCGCAAGAGGACGTAAATGGACGACACGAG
ACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGGGGGGCACGGGTCGCG
TGGAGGGACAGGGAAAAGAGTGGATGGAGTGTCTTCTGGAAGGCCTCAAA
GTTTTCGGTATCAACCCCGACCAGTGGACGATTGCAGCCCAGGACGAGGG
GAGGTGGCGCAAGAGGACGTAA
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