mRNA_H-elongata_contig60323.13572.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60323.13572.1
Unique NamemRNA_H-elongata_contig60323.13572.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60323.13572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60323contigH-elongata_contig60323:259..1939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003310.1
Exons2
Model size1141
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60323.13572.1prot_H-elongata_contig60323.13572.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60323 806..1939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.5948336-UTR-H-elongata_contig60323:258..8051622930977.5948336-UTR-H-elongata_contig60323:258..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60323 259..805 -
1691679648.2239149-UTR-H-elongata_contig60323:258..8051691679648.2239149-UTR-H-elongata_contig60323:258..805Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60323 259..805 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.6160002-CDS-H-elongata_contig60323:805..9991622930977.6160002-CDS-H-elongata_contig60323:805..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60323 806..999 -
1691679648.232533-CDS-H-elongata_contig60323:805..9991691679648.232533-CDS-H-elongata_contig60323:805..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60323 806..999 -
1622930977.631827-CDS-H-elongata_contig60323:1539..19391622930977.631827-CDS-H-elongata_contig60323:1539..1939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60323 1540..1939 -
1691679648.2413833-CDS-H-elongata_contig60323:1539..19391691679648.2413833-CDS-H-elongata_contig60323:1539..1939Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60323 1540..1939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60323.13572.1

>prot_H-elongata_contig60323.13572.1 ID=prot_H-elongata_contig60323.13572.1|Name=mRNA_H-elongata_contig60323.13572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
SRCSTPSPSADDLAARRASLPSPIRTPTPIPSPSSQWSQPPISPSSDDSL
LAAAARFRSSPVSSWISPDRPRGKTCEYNRNAFAKPETQTTRKDRARFEA
IREAQHVRRRRRRGWLMGSIAVLLTAVLACRLGGELPVVVSSKTELMAAL
EVAGIKAGDEQVAKAWNALVEGEARACLLGTTDADGRGPCGSTAARS*
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mRNA from alignment at H-elongata_contig60323:259..1939-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60323.13572.1 ID=mRNA_H-elongata_contig60323.13572.1|Name=mRNA_H-elongata_contig60323.13572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-elongata_contig60323:259..1939- (Himanthalia elongata Himel1 dioecious)
AGCCGGTGCTCGACCCCCTCGCCTTCAGCCGATGACTTGGCGGCTAGAAG
AGCATCTCTACCCTCACCCATCCGCACGCCGACCCCTATACCTTCTCCAA
GCAGCCAGTGGTCACAGCCTCCGATATCTCCGTCTAGCGATGATTCACTC
CTTGCAGCCGCCGCAAGATTTCGTTCCTCCCCCGTCTCCTCGTGGATCTC
GCCGGACCGCCCCCGGGGAAAAACTTGTGAATATAATCGGAATGCGTTCG
CGAAGCCCGAGACACAGACCACCAGGAAGGACCGCGCGCGATTCGAGGCG
ATACGAGAGGCCCAGCATGTCAGAAGGCGGCGACGACGCGGATGGCTGAT
GGGGTCCATCGCAGTTCTTCTTACAGCCGTCCTCGCCTGTCGATTAGGCG
GTGAGTTGCCATCAGAACAACAACAACCCGAGCCGCGAAGCAATGTAAAC
ACAGTCCAATGCCCTCGTCTCGACCATGCGGAATCGTGTTTTACAATGTT
TCTATTGCGTTGAAGGTCATTCTCGTCACCTTCTTGGTGCTGCACGTTCA
GGGATGCACATTTCCGGGCCCAATAAAGCCGATCCATTTTGCCTCGTGAA
GAGAGATCTCGTACTCTCAATAAGGGGGGAGGAGGATGGCTACAGCTTGA
CGTGAAGCCTCTACTACAGTGGCATCACCACTTCCGAAGCAACGAGTTGG
ACAGGGGGGTCTGCAAAAGTTCCTCGGTCAGCACTAAGATTCGATCGCGA
TGGATTGTGCCCGAGAATAGCTTCCTCGGTGTGTATCGACACCAACCTCC
AGAGAAGCGTATCCTGTTTCCTTCTCGTAGAATATCCCTCCCTCCCCTCC
CCGTAACGCGTCTTCGGCAAGAAAATAGGTGCCCATTTTCTTATCGCTAC
CGCTGCCGATGATTTCCATGATTCATCGAATCTGTCGCAGGGGAGCTACC
TGTCGTGGTTTCCTCGAAGACGGAGCTGATGGCCGCGCTCGAGGTTGCGG
GCATCAAGGCTGGAGACGAACAGGTGGCAAAAGCATGGAACGCGCTCGTT
GAAGGAGAAGCTCGAGCCTGTCTGCTGGGGACGACTGACGCTGACGGTCG
CGGACCATGCGGCAGCACGGCGGCTCGCAGTTGAAGAAGCGAAAGTGTTA
TTGTTGAAGACGACTGACGCCAATGCTGACGGTCGAGGATCCCTCGACAG
CGCGGCGGCGAACCTCTTGGCCGCCGCCGCGCTTCAAAATCTGGAAGATT
CCAGTTTTTTTGCAGCAATTTCCGCGGTGGGTTTGGCGGCAGTGAAATTT
GGCTGGTTGCGTTTTGGTTGTATGCGCGATAGCGGGACGGTCGACGAGGC
CGAGGATGTGGGTGGTAACCAAAGAGAGGGCCACAAGATAGGCCTTGCCG
ACGTTGGTGGGCACGTTTTACCGGTACACTGGGACAGAGGACGGCGGTGG
TCCAAAGTCGCGGTGGCAGGTCGTCGGAAACCTACGTCACACAGGGAGCT
TTTTGTTGCCTCTACAACAAGTCGCATAAAACCGTCGAGTGCTGGGGGTA
AGATTGAATGTATTCGATTTACAGGTTGAAGGGGACGACTCCTACGCGTG
GGAGCATCATTTTACGTTACACGATATGCTGTCGAGTCAATGCTGTAGAA
GTTTGAAATAATAGTCATTGCGTCTGACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig60323:259..1939-

>mRNA_H-elongata_contig60323.13572.1 ID=mRNA_H-elongata_contig60323.13572.1|Name=mRNA_H-elongata_contig60323.13572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig60323:259..1939- (Himanthalia elongata Himel1 dioecious)
AGCCGGTGCTCGACCCCCTCGCCTTCAGCCGATGACTTGGCGGCTAGAAG
AGCATCTCTACCCTCACCCATCCGCACGCCGACCCCTATACCTTCTCCAA
GCAGCCAGTGGTCACAGCCTCCGATATCTCCGTCTAGCGATGATTCACTC
CTTGCAGCCGCCGCAAGATTTCGTTCCTCCCCCGTCTCCTCGTGGATCTC
GCCGGACCGCCCCCGGGGAAAAACTTGTGAATATAATCGGAATGCGTTCG
CGAAGCCCGAGACACAGACCACCAGGAAGGACCGCGCGCGATTCGAGGCG
ATACGAGAGGCCCAGCATGTCAGAAGGCGGCGACGACGCGGATGGCTGAT
GGGGTCCATCGCAGTTCTTCTTACAGCCGTCCTCGCCTGTCGATTAGGCG
AGCCGGTGCTCGACCCCCTCGCCTTCAGCCGATGACTTGGCGGCTAGAAG
AGCATCTCTACCCTCACCCATCCGCACGCCGACCCCTATACCTTCTCCAA
GCAGCCAGTGGTCACAGCCTCCGATATCTCCGTCTAGCGATGATTCACTC
CTTGCAGCCGCCGCAAGATTTCGTTCCTCCCCCGTCTCCTCGTGGATCTC
GCCGGACCGCCCCCGGGGAAAAACTTGTGAATATAATCGGAATGCGTTCG
CGAAGCCCGAGACACAGACCACCAGGAAGGACCGCGCGCGATTCGAGGCG
ATACGAGAGGCCCAGCATGTCAGAAGGCGGCGACGACGCGGATGGCTGAT
GGGGTCCATCGCAGTTCTTCTTACAGCCGTCCTCGCCTGTCGATTAGGCG
GGGAGCTACCTGTCGTGGTTTCCTCGAAGACGGAGCTGATGGCCGCGCTC
GAGGTTGCGGGCATCAAGGCTGGAGACGAACAGGTGGCAAAAGCATGGAA
CGCGCTCGTTGAAGGAGAAGCTCGAGCCTGTCTGCTGGGGACGACTGACG
CTGACGGTCGCGGACCATGCGGCAGCACGGCGGCTCGCAGTTGAGGGAGC
TACCTGTCGTGGTTTCCTCGAAGACGGAGCTGATGGCCGCGCTCGAGGTT
GCGGGCATCAAGGCTGGAGACGAACAGGTGGCAAAAGCATGGAACGCGCT
CGTTGAAGGAGAAGCTCGAGCCTGTCTGCTGGGGACGACTGACGCTGACG
GTCGCGGACCATGCGGCAGCACGGCGGCTCGCAGTTGA
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