mRNA_H-elongata_contig60287.13570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60287.13570.1
Unique NamemRNA_H-elongata_contig60287.13570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: D8LMW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW0_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.090e-94
Identity = 139/170 (81.76%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 IGLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            +GLTAGGIASFMCCP+EV MVRMQSDARLP  +RLGYKHIGDAL+RI+KEEG+R YWRGATPTV+RAMVVSMTQLGTYDQ KT+L PILGDNKG HLASALTAAVV+SYASLPLDSAKTR+QSQ    DG  LKYT T QTLS+V + EGF SLWKGFTPYF+RSGTHTV
Sbjct:  115 VGLTAGGIASFMCCPIEVCMVRMQSDARLPQADRLGYKHIGDALFRIAKEEGVRTYWRGATPTVSRAMVVSMTQLGTYDQAKTVLLPILGDNKGLHLASALTAAVVYSYASLPLDSAKTRMQSQAASTDGKPLKYTSTLQTLSHVAKSEGFFSLWKGFTPYFLRSGTHTV 284          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 5.820e-74
Identity = 115/169 (68.05%), Postives = 133/169 (78.70%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            GL AGGIA+F+ CP+EV +VRMQ+D RLP  ER GY ++ +AL R++KEEG+  YWRGA+PTVARAMVVS TQLGTYDQVKT L PILGD   T   +ALTAAVV+SYASLPLD+AKTR+Q Q   RDG  LKYTG  QT+  + R EG  SLWKGFTPYFVRSG HTV
Sbjct:  111 GLAAGGIAAFLTCPIEVCLVRMQADGRLPPAERRGYTNVFNALGRVAKEEGVLTYWRGASPTVARAMVVSATQLGTYDQVKTSLLPILGDGAATQTVAALTAAVVYSYASLPLDTAKTRMQGQARARDGAPLKYTGMLQTVGAIAREEGARSLWKGFTPYFVRSGGHTV 279          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: W7TLF9_9STRA (Mitochondrial 2-oxoglutarate malate carrier protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLF9_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.610e-59
Identity = 101/170 (59.41%), Postives = 121/170 (71.18%), Query Frame = 1
Query:    7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVK-TMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRD-GGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            +TAG  ASF+ CPVEV +VRMQ+D +LP  +R GYKH+GDAL R+++EEG+  YWRGA PTV RAMVVS TQLGTYDQ K T     L D    HL S+LTA +V+S ASLPLD+AKTR+QSQ  P   GG+L Y  T QTL  +   EG  +LWKGF  YF+R G HTV
Sbjct:  125 MTAGACASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPTVMRAMVVSTTQLGTYDQAKVTFKETGLPDGTSLHLISSLTAGLVYSLASLPLDTAKTRMQSQAAPSTPGGALAYRSTGQTLMKIASEEGVGALWKGFGAYFLRGGGHTV 294          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A4D9CTP4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTP4_9STRA)

HSP 1 Score: 194 bits (494), Expect = 8.520e-59
Identity = 101/170 (59.41%), Postives = 121/170 (71.18%), Query Frame = 1
Query:    7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVK-TMLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRD-GGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            +TAG  ASF+ CPVEV +VRMQ+D +LP  +R GYKH+GDAL R+++EEG+  YWRGA PTV RAMVVS TQLGTYDQ K T     L D    HL S+LTA +V+S ASLPLD+AKTR+QSQ  P   GG+L Y  T QTL  +   EG  +LWKGF  YF+R G HTV
Sbjct:  129 MTAGACASFLACPVEVCLVRMQADGKLPPEQRRGYKHVGDALLRVAREEGVLTYWRGAGPTVMRAMVVSTTQLGTYDQAKVTFKETGLPDGTSLHLISSLTAGLVYSLASLPLDTAKTRMQSQAAPSTPGGALAYRSTGQTLMKIASEEGVGALWKGFGAYFLRGGGHTV 298          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S4LEC9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEC9_9EUGL)

HSP 1 Score: 193 bits (490), Expect = 8.580e-59
Identity = 97/171 (56.73%), Postives = 128/171 (74.85%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKT--MLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            G+ AGG+A+FMC PVEV +VRMQ+D RLPA E+ GYKH+GDAL RI+ EEG   Y+RG+ PTV RA+VVS+TQ+  YDQ+K+  + T +  DN   HL+S+++A  ++S ASLP D+ KTR+Q+Q  P   G L YTGTFQT++ +++ EG TSLWKGF PYF R G HTV
Sbjct:   81 GVGAGGLAAFMCNPVEVCLVRMQADGRLPAAEQRGYKHVGDALVRIASEEGFVTYYRGSAPTVVRAIVVSVTQVAGYDQIKSGFLSTGLFQDNILCHLSSSVSAGFLYSLASLPFDTTKTRMQNQK-PGADGKLPYTGTFQTMTSIIKQEGATSLWKGFLPYFGRCGGHTV 250          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S4GIE6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GIE6_9EUGL)

HSP 1 Score: 186 bits (471), Expect = 6.570e-56
Identity = 92/170 (54.12%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    7 LTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKT--MLTPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            + AG  A+ +C PVEV +VRMQ+D RLP  E+ GYKH+GDAL R+++EEG+  YWRG TPTV RA+VVS+TQ+  YDQ+K   + T    DN   HL S++ A  ++S ASLP D+ KTR+Q+Q  P   G L YTGTFQT++ ++R EG  S+WKGF PYF R G HTV
Sbjct:   82 VAAGAAAACVCNPVEVCLVRMQADGRLPPAEQRGYKHVGDALMRVAREEGVLTYWRGCTPTVVRAIVVSVTQVAGYDQIKAGFLSTGYFQDNIFCHLTSSVAAGFIYSLASLPFDTTKTRMQNQK-PGPDGKLPYTGTFQTMTNIIRNEGAASMWKGFMPYFGRCGGHTV 250          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A0G4GW21_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GW21_VITBC)

HSP 1 Score: 179 bits (454), Expect = 7.010e-53
Identity = 95/172 (55.23%), Postives = 121/172 (70.35%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML---TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            GLT+G IAS +CCPVEVS+VRMQ+D RLP  ER GY ++ +ALYRI+KEEGI   WRG+TPTVARAMVV+M Q G+YDQ K +L   TP+ G   G H +++L +   +S ASLP D AKTR+Q+Q  P  G   +Y   FQT+  +  +EG  SLWKGF PYF R G H++
Sbjct:  118 GLTSGAIASVVCCPVEVSLVRMQADGRLPVAERRGYTNVFNALYRIAKEEGILTCWRGSTPTVARAMVVNMVQFGSYDQAKEVLMAMTPLKG--VGLHFSASLISGFTYSAASLPFDIAKTRMQNQKTPA-GEIPQYRNIFQTMWRIGSLEGPLSLWKGFWPYFGRGGGHSI 286          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S1JD16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JD16_9EUGL)

HSP 1 Score: 178 bits (452), Expect = 9.810e-53
Identity = 95/171 (55.56%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML--TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            G+ AG IAS +C P+EV +VRMQSD RLP  E+  YKHI DAL R+++EEGI  YWRG TPTV RA+VVS+TQ+  YDQ+K  L  +    DN   HL+S++ A  ++S ASLP D+ KTR+Q+Q  P DG  L YT T QT+S+++R EG  S+WKGF PYF R G HTV
Sbjct:  107 GVGAGAIASSVCNPIEVCLVRMQSDGRLPKAEQRNYKHIFDALGRVAREEGILTYWRGCTPTVVRAIVVSVTQVAGYDQIKASLLNSGWFQDNMYCHLSSSVLAGFIYSAASLPFDTTKTRMQTQK-PVDG-KLLYTSTAQTMSHIIRNEGPKSMWKGFLPYFGRCGGHTV 275          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A7S2TXY1_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TXY1_9EUKA)

HSP 1 Score: 176 bits (446), Expect = 9.260e-52
Identity = 91/171 (53.22%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTP--ILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            GL AG  A+ +CCPVEVS+VRMQ+D   P  +R  YKHI DA+ R++ EEGI   WRG  PTV R  VVS TQL TYDQ K+ML    IL +  G HLAS+L +  V+ + SLPLD  KTR+Q Q      G L YT  FQ L  + + EG  +LWKGF PYF R G HTV
Sbjct:  110 GLAAGATAATICCPVEVSLVRMQADGNRPLADRRNYKHIFDAMMRVTAEEGITTLWRGVVPTVFRGAVVSTTQLATYDQAKSMLKSFNILNEGVGLHLASSLISGFVYCFTSLPLDICKTRMQDQKPDVKTGKLPYTSVFQALYKIPQQEGIFALWKGFGPYFARGGGHTV 280          
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Match: A0A0G4HYE4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYE4_9ALVE)

HSP 1 Score: 176 bits (446), Expect = 1.310e-51
Identity = 92/174 (52.87%), Postives = 118/174 (67.82%), Query Frame = 1
Query:    4 GLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKEEGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTML-----TPILGDNKGTHLASALTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEGFTSLWKGFTPYFVRSGTHTV 510
            GL +G  A+ +CCPVEVS++RMQ+D RLP  ER  YK++ D + RI++EEGI   WRG+TPTV RAMVV+M Q+ TYD+ K  L        L      H AS+LT+  ++S ASLP D AKTR+Q+Q    DG S +Y+  FQTL  +VR+EG  +LWKGF PYF RSG HTV
Sbjct:  120 GLASGATAATICCPVEVSLIRMQADGRLPPEERRNYKNVFDGILRIAREEGIATCWRGSTPTVVRAMVVNMVQMATYDEAKRTLQKQNAVSSLKAGLPLHFASSLTSGFLYSAASLPFDIAKTRMQNQKALADG-SRQYSNIFQTLMLIVRLEGPAALWKGFAPYFGRSGLHTV 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60287.13570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMW0_ECTSI1.090e-9481.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4J2_9STRA5.820e-7468.05Mitochondrial carrier domain-containing protein n=... [more]
W7TLF9_9STRA7.610e-5959.41Mitochondrial 2-oxoglutarate malate carrier protei... [more]
A0A4D9CTP4_9STRA8.520e-5959.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S4LEC9_9EUGL8.580e-5956.73Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4GIE6_9EUGL6.570e-5654.12Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0G4GW21_VITBC7.010e-5355.23Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1JD16_9EUGL9.810e-5355.56Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2TXY1_9EUKA9.260e-5253.22Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A0G4HYE4_9ALVE1.310e-5152.87Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60287contigH-elongata_contig60287:2193..3623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.3
Seed ortholog evalue4.5e-75
Seed eggNOG ortholog2880.D8LMW0
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
EggNOG free text desc.thiosulfate transmembrane transporter activity
EggNOG OGsKOG0759@1,KOG0759@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons4
Model size510
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60287.13570.1prot_H-elongata_contig60287.13570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60287 2193..3623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930977.4001362-CDS-H-elongata_contig60287:2192..23601622930977.4001362-CDS-H-elongata_contig60287:2192..2360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 2193..2360 -
1691679648.1392074-CDS-H-elongata_contig60287:2192..23601691679648.1392074-CDS-H-elongata_contig60287:2192..2360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 2193..2360 -
1622930977.4157317-CDS-H-elongata_contig60287:2488..26401622930977.4157317-CDS-H-elongata_contig60287:2488..2640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 2489..2640 -
1691679648.1501825-CDS-H-elongata_contig60287:2488..26401691679648.1501825-CDS-H-elongata_contig60287:2488..2640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 2489..2640 -
1622930977.4284582-CDS-H-elongata_contig60287:3068..32071622930977.4284582-CDS-H-elongata_contig60287:3068..3207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 3069..3207 -
1691679648.1591098-CDS-H-elongata_contig60287:3068..32071691679648.1591098-CDS-H-elongata_contig60287:3068..3207Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 3069..3207 -
1622930977.4407604-CDS-H-elongata_contig60287:3572..36231622930977.4407604-CDS-H-elongata_contig60287:3572..3623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 3573..3623 -
1691679648.1732364-CDS-H-elongata_contig60287:3572..36231691679648.1732364-CDS-H-elongata_contig60287:3572..3623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60287 3573..3623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60287.13570.1

>prot_H-elongata_contig60287.13570.1 ID=prot_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
IGLTAGGIASFMCCPVEVSMVRMQSDARLPAGERLGYKHIGDALYRISKE
EGIRMYWRGATPTVARAMVVSMTQLGTYDQVKTMLTPILGDNKGTHLASA
LTAAVVFSYASLPLDSAKTRIQSQTVPRDGGSLKYTGTFQTLSYVVRVEG
FTSLWKGFTPYFVRSGTHTV
back to top

mRNA from alignment at H-elongata_contig60287:2193..3623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60287.13570.1 ID=mRNA_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1431bp|location=Sequence derived from alignment at H-elongata_contig60287:2193..3623- (Himanthalia elongata Himel1 dioecious)
ATCGGTCTCACCGCCGGTGGCATCGCTTCCTTCATGTGCTGCCCCGTAGA GGTGAAGGTTACGCAGTAAATATAATTCGCTCGCAGTAAAGGACGTGATA ATGTACTTGTAAAACCCGTACTATGCACAGATCTCCGTGGTATCACCCGC TCCTCGTGGCGTACCTGAGAGGCGATCCTTTGAAAAGTCTAATATAGGCG GATTGAAAGGCTTGTTTTGCGTTCAGGTCCGCGGGCCTCCAAGGTAAAAA ATCACCATGGCAAACAATGACCGTCAATCGGCTTCAATGACCTACTCGGT CCATCTTCCCCATCGTCAGTGTTGACGCCAAGACGCGGTTGACCGGAGCA CCTTCTTACGTCCAGGGCTTTAATCGAACTGTTTTGTGTCCCCTACGGCA AACAAACGATACGCAGGTATCCATGGTGCGGATGCAGAGCGACGCTCGAC TGCCTGCGGGAGAACGGCTGGGTTACAAGCACATCGGTGACGCTCTGTAC CGCATTTCGAAGGAGGAAGGGATTCGTATGTACTGGCGAGGCGCGACTCC CACAGGTGCGGCGCCGTGGGCGCTTTGCCCGATCTCACTCGGAGATGTGG TTTACGTTCGGCAGGTCTTTATGTCGCTCTCGAACTTAATTAAGGCAAGA ATGTCTGGCTCTAAGTTTCACTCGATATCAGTTGCAACTCCTGCGCATGT GCGTTTGTCTGGAGGGTTTTTACAAGGTCACCCTACAAACGTTGAATCCT AGCATCGACGCTGTACTTAGCCCCATTCTTCCCTACCGTCATCACACGAG GTACGCGTTTGTGTTGATGGGTTTCCATTTCACCACTTGGGAGCAATAAG GTGACTTTTGGCGCTTTACCTCGAGTTTAAACGTCAGCATCCCGCGTAAA TATGGCGCAATATATTAGAGAGACATCTGTCAGTGGATCTTATCCTTTCC CACCATCCTCTTCTACGGTGTACCGCTCGGAAGTCGCGCGCGCCATGGTT GTGTCGATGACCCAACTGGGTACTTACGACCAGGTGAAGACAATGTTGAC ACCGATCCTGGGGGACAACAAAGGAACCCATTTAGCGTCCGCTTTAACGG CCGCGGTTGTCTTCTCGTACGCGTCTCTACCTCTGGTGAGCGATGCAGAA ATGGCTTTTGTCGCTTAAGTGTGGGTAGCTACAATCGTGCTTCACATCTA ATTAAAATATATTGCAACATGCTTGACAGTAACACCCTGTCGTTTTCGTG GTGAATGGGGCAGGACTCTGCTAAGACACGAATACAGAGCCAGACTGTTC CGCGGGATGGAGGGTCACTAAAGTACACGGGCACCTTTCAGACCTTATCC TACGTCGTCAGGGTGGAGGGTTTCACAAGCCTGTGGAAGGGATTTACTCC GTACTTTGTGCGGTCTGGTACGCACACGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig60287:2193..3623-

>mRNA_H-elongata_contig60287.13570.1 ID=mRNA_H-elongata_contig60287.13570.1|Name=mRNA_H-elongata_contig60287.13570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig60287:2193..3623- (Himanthalia elongata Himel1 dioecious)
ATCGGTCTCACCGCCGGTGGCATCGCTTCCTTCATGTGCTGCCCCGTAGA
GATCGGTCTCACCGCCGGTGGCATCGCTTCCTTCATGTGCTGCCCCGTAG
AGGTATCCATGGTGCGGATGCAGAGCGACGCTCGACTGCCTGCGGGAGAA
CGGCTGGGTTACAAGCACATCGGTGACGCTCTGTACCGCATTTCGAAGGA
GGAAGGGATTCGTATGTACTGGCGAGGCGCGACTCCCACAGGTATCCATG
GTGCGGATGCAGAGCGACGCTCGACTGCCTGCGGGAGAACGGCTGGGTTA
CAAGCACATCGGTGACGCTCTGTACCGCATTTCGAAGGAGGAAGGGATTC
GTATGTACTGGCGAGGCGCGACTCCCACAGTCGCGCGCGCCATGGTTGTG
TCGATGACCCAACTGGGTACTTACGACCAGGTGAAGACAATGTTGACACC
GATCCTGGGGGACAACAAAGGAACCCATTTAGCGTCCGCTTTAACGGCCG
CGGTTGTCTTCTCGTACGCGTCTCTACCTCTGTCGCGCGCGCCATGGTTG
TGTCGATGACCCAACTGGGTACTTACGACCAGGTGAAGACAATGTTGACA
CCGATCCTGGGGGACAACAAAGGAACCCATTTAGCGTCCGCTTTAACGGC
CGCGGTTGTCTTCTCGTACGCGTCTCTACCTCTGGACTCTGCTAAGACAC
GAATACAGAGCCAGACTGTTCCGCGGGATGGAGGGTCACTAAAGTACACG
GGCACCTTTCAGACCTTATCCTACGTCGTCAGGGTGGAGGGTTTCACAAG
CCTGTGGAAGGGATTTACTCCGTACTTTGTGCGGTCTGGTACGCACACGG
TAGACTCTGCTAAGACACGAATACAGAGCCAGACTGTTCCGCGGGATGGA
GGGTCACTAAAGTACACGGGCACCTTTCAGACCTTATCCTACGTCGTCAG
GGTGGAGGGTTTCACAAGCCTGTGGAAGGGATTTACTCCGTACTTTGTGC
GGTCTGGTACGCACACGGTA
back to top