mRNA_H-elongata_contig60276.13566.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60276.13566.1
Unique NamemRNA_H-elongata_contig60276.13566.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60276.13566.1 vs. uniprot
Match: D7FTD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.940e-19
Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:   22 NIAYMKAVEGHCIHSFTDIMLCADILLRYPGMCRIRMHLTHCVLAAS-VQTCRSIYDQVRVVYNATRSPGWRPAPPFEEWTSMDDICDNVFCRSLQAEIKDSNSHWSGDSFISTDVR----ATSSQSSSCDDSSCQVANGEDTCGSPPLPLMSRL 471
            N+AYMK V G        +   ADI+LRYPG+ R R H  HC LA S     R +YD +  VYN+ R PG   APP+EEW ++  ICDN+FCRS +AEI  ++    G+  + T+V      TS  +S    S C  A  ++  GS P  L  RL
Sbjct:  193 NVAYMKTVNGDVEDLIKCLQASADIVLRYPGIVRFRPHFIHCTLAVSHFSKRRDMYDAMNGVYNSIRPPGCWRAPPYEEWRTITQICDNMFCRSFEAEIHKAHH---GEGLMQTNVSDNEDVTSGPASGSMKSPCIGAERQNG-GSLPAELCQRL 343
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BLAST of mRNA_H-elongata_contig60276.13566.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.200e-9
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:   19 RNIAYMKAVEGHCIHSFTDIMLCADILLRYPGMCRIRM--HLTHCVLAASVQTCR-SIYDQVRVVYNATRSPGWRPAPPFEEWTSMDDICDNVFCRSLQAEIKDSNSH 333
            RN+ +++A+      S          LLRYPG+CR     H  H  L       R   Y+ +R  YN  R     PAPPF+EWT M DICD+ +CR++  ++  + +H
Sbjct:  489 RNLCFLQALNNDIAASAGSFHRSVSALLRYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSPAPPFDEWTGMSDICDHPYCRNVAEQMSAAFAH 596
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BLAST of mRNA_H-elongata_contig60276.13566.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.280e-9
Identity = 36/101 (35.64%), Postives = 51/101 (50.50%), Query Frame = 1 
Query:   22 NIAYMKAVEGHCIHSFTDIMLCADILLRYPGMCRIRM--HLTHCVLAASVQTCR-SIYDQVRVVYNATRSPGWRPAPPFEEWTSMDDICDNVFCRSLQAEI 315
            N+ +++A++     S          LLRYPG+CR     H  H  L       R   Y+ +R  YN  R     PAPPFEEWT M DICD+ +CR++  ++
Sbjct:  566 NLCFLQALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSPAPPFEEWTGMSDICDHPYCRNVAEQM 666
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60276.13566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTD6_ECTSI2.940e-1941.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSE2_ECTSI1.200e-934.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE2.280e-935.64Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60276contigH-elongata_contig60276:2..2624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1994
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60276.13566.1prot_H-elongata_contig60276.13566.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60276 871..2591 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.9050105-UTR-H-elongata_contig60276:1..8701622930976.9050105-UTR-H-elongata_contig60276:1..870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60276 2..870 -
1691679647.9588344-UTR-H-elongata_contig60276:1..8701691679647.9588344-UTR-H-elongata_contig60276:1..870Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60276 2..870 -
1622930977.0055776-UTR-H-elongata_contig60276:2591..26241622930977.0055776-UTR-H-elongata_contig60276:2591..2624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60276 2592..2624 -
1691679648.008368-UTR-H-elongata_contig60276:2591..26241691679648.008368-UTR-H-elongata_contig60276:2591..2624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60276 2592..2624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.923385-CDS-H-elongata_contig60276:870..16991622930976.923385-CDS-H-elongata_contig60276:870..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 871..1699 -
1691679647.9677484-CDS-H-elongata_contig60276:870..16991691679647.9677484-CDS-H-elongata_contig60276:870..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 871..1699 -
1622930976.9443712-CDS-H-elongata_contig60276:1956..21241622930976.9443712-CDS-H-elongata_contig60276:1956..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 1957..2124 -
1691679647.9807026-CDS-H-elongata_contig60276:1956..21241691679647.9807026-CDS-H-elongata_contig60276:1956..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 1957..2124 -
1622930976.9660857-CDS-H-elongata_contig60276:2496..25911622930976.9660857-CDS-H-elongata_contig60276:2496..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 2497..2591 -
1691679647.9979005-CDS-H-elongata_contig60276:2496..25911691679647.9979005-CDS-H-elongata_contig60276:2496..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60276 2497..2591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60276.13566.1

>prot_H-elongata_contig60276.13566.1 ID=prot_H-elongata_contig60276.13566.1|Name=mRNA_H-elongata_contig60276.13566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=364bp
MKAVEGHCIHSFTDIMLCADILLRYPGMCRIRMHLTHCVLAASVQTCRSI
YDQVRVVYNATRSPGWRPAPPFEEWTSMDDICDNVFCRSLQAEIKDSNSH
WSGDSFISTDVRATSSQSSSCDDSSCQVANGEDTCGSPPLPLMSRLHPGK
PLKSSESASLTSTTRGDQTLAGPVSLSGVDSETSSWSFCTNSALAGAAAG
NAEMVTTAESGMQRYAPAAAVEADIPLPLASCELVRPTLSAAFPTRISAT
NPSAGAFVGRTADYELPMVDLVDARTKTLAPSTADGTARNDLAVGASGVA
LESDLSAASVSSIRDLKYLGEVGMNGASCDLITEEDLMEAAELLLSERLL
EFEPDRESARCVG*
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mRNA from alignment at H-elongata_contig60276:2..2624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60276.13566.1 ID=mRNA_H-elongata_contig60276.13566.1|Name=mRNA_H-elongata_contig60276.13566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2623bp|location=Sequence derived from alignment at H-elongata_contig60276:2..2624- (Himanthalia elongata Himel1 dioecious)
GTTTCCGTTCGTTGCAAAAGGAACATCGCCTACATGAAAGCTGTCGAGGG
TCATTGTATTCACTCGTTTACGGACATCATGCTCTGCGCGGATATTCTGC
TGCGATACCCCGGCATGTGCCGGATCAGGTACTGAAGTTGTACGTATGAG
GAACGTTGTGGTCTGGTTTTGTGCCTGTGCCTCTCTTTGTATGGCCGTCT
CGCTTTCGATGTGTGTGTGTGTGTGTGTGTGCGTGTCTCTGGATATATGT
GCGCGTGAATGAGTATGATATTACAGAGCCATTCGTATACATATCTGTAC
ATGTTTACCCAAACCTTGCCTCTTAAGGCTATACTTGCATCCTTTCTTGT
CTGATCATGGTTTGGTTGGTTTGTTTTCGATCTCTATACCCAACCGTTTC
TAAACCGATTGCTTAAGTAGAAATGCCGCTCTTCATTCACCGGACATCTC
ATGTCCCCTCTCTACTTGGAATCCACTGCGGCGTCTTTGTCTTGCCGCAG
AATGCACCTGACTCACTGCGTCCTCGCCGCAAGCGTGCAAACCTGTCGTT
CGATATACGACCAAGTTAGGGTCGTCTACAACGCCACCCGATCACCTGGG
TGGAGACCGGCCCCTCCTTTCGAGGAGTGGACGAGCATGGACGATATATG
TGACAACGTTTTCTGCAGGTACATTCATTGTGATGACTTACTCATGATCG
CGCCAGATGACGAAACCAGACGACGCCGTGGATTTCGATTGGACCCACTG
CTTTGAGCGGTGCAGATGTTGCCTTTTTAACGTGACCAATCACCGTTCGT
GTCTGAAGTAAGGCGGAGTGGATTGGGTTCTAGAACTCAAGTGCTGCTGT
GTCTTGAATTTTGTCTGCGTTCGTTTGTCGACCACCCTGGCTCGCTTCCC
TTGCCAATACACGGTCGTAAATCAGGTCGTTGCAGGCCGAGATCAAAGAC
TCCAATAGTCATTGGAGCGGCGACAGTTTCATCTCCACCGATGTGCGCGC
TACCTCGTCACAATCATCCAGCTGCGACGATAGTTCCTGCCAAGTCGCGA
ACGGCGAAGATACCTGCGGGTCGCCACCACTGCCTCTAATGTCAAGGCTA
CATCCTGGTAAACCCTTGAAGTCGTCGGAATCAGCCTCGTTGACGTCAAC
GACGAGGGGTGATCAAACGCTGGCGGGTCCCGTGTCTCTATCCGGAGTCG
ATTCTGAAACATCTTCATGGAGCTTCTGCACAAATAGCGCTCTTGCTGGC
GCCGCGGCGGGTAACGCGGAGATGGTTACAACGGCTGAATCGGGGATGCA
GCGGTATGCGCCGGCTGCGGCGGTGGAAGCGGATATCCCTTTGCCCCTCG
CGTCTTGCGAACTCGTCCGCCCCACGCTATCTGCGGCGTTTCCCACTCGA
ATCAGTGCCACCAACCCCAGCGCGGGTGCTTTCGTCGGAAGGACAGCCGA
CTATGAACTACCAATGGTCGATCTCGTGGACGCCAGGACAAAAACGCTCG
CCCCGTCGACCGCGGATGGGACTGCCAGGAATGACTTGGCGGTTGGGGCG
AGCGGCGTAGCACTAGAGTCAGACCTCAGCGCGGCCTCGGTGTCATCGAT
TCGAGATTTGAAATATTTGGGCGAGGTGGGAATGAACGGCGCTTCGTGTG
ACCTCATAACGGAAGAAGACTTAATGGAAGCCGCAGAATTATTGTTAAGC
GAGAGGCTTCTCGAGTTTGAGCCTGATCGTGAAAGCGCAAGGTGCGTCGG
CTGAAATTTGGGAGCTCTCTGCCTCTTACCCTATGTTCTATATATAGCTA
TCGTACCCATGTGCGTGATTTTTCTCTTGTTAGTGTTTCCTTGTAAGTGC
TGGGTTCGTATTGCTTATTAGTAGTAGCGGATAATGGTTCGCTTGCGATG
ATCACGAAATAGAGAGAGCAGCGGATCACTGTGTTTTCTGCACGTTGACT
TTTTCGCCTCCTCGGGGAGAAGACGCTGTGTGTGTTCTTTCGTCCATACC
ATGTTGTACTCTGTATTTATTTATATTTTTACGTAATGTGGATCGTAAGC
AGAAATAATATAGCAGAAATAATATAGCAGGGTACAGGAGAAGAGGTGCA
GTATCTGCTTCGACTGATCTCGGATCTAGAGCAACCCAGCACCGTGGGGC
AACGTGGGTAGCAATCTCCTGAAGAAGAACGCTTTAAATTTCTGACTACC
TAAAGACCTCCAAGGGGGCGGTTGGGGGCAACAAGGTGATATCCAAGTAA
AGTGATCAATACGTAGGGGCGTGGATGTTGCATAAACGCCAGCGTGTGCC
TTGACAGGGGGATGTCAGTCTGCTTTACCAACGATAAACAAGGCAATTAC
TGAGGGCAGGCAGCAACCTTAGACCTCGAAAATGCACTGCTGGTGGTAAA
TAGTAAATAATACCTACGAAGTAATAATGTACATGCAACTCAACTATAAC
GAGAAAATAAAAAATAAACTGCGGTCATCATCATCTGGTCGTGGAAGTTG
TTGATTTGAATGTTTGTTCCCCCTTTTTTAGCGGAGAGCTTTCTTTAATT
AAGGGCAAAAGACAAGTGGGTATTGAATGAATTGAATTGAATTGAATTCT
CACATAAGCTGATGTCAAAATCC
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Coding sequence (CDS) from alignment at H-elongata_contig60276:2..2624-

>mRNA_H-elongata_contig60276.13566.1 ID=mRNA_H-elongata_contig60276.13566.1|Name=mRNA_H-elongata_contig60276.13566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2184bp|location=Sequence derived from alignment at H-elongata_contig60276:2..2624- (Himanthalia elongata Himel1 dioecious)
ATGAAAGCTGTCGAGGGTCATTGTATTCACTCGTTTACGGACATCATGCT
CTGCGCGGATATTCTGCTGCGATACCCCGGCATGTGCCGGATCAGATGAA
AGCTGTCGAGGGTCATTGTATTCACTCGTTTACGGACATCATGCTCTGCG
CGGATATTCTGCTGCGATACCCCGGCATGTGCCGGATCAGAATGCACCTG
ACTCACTGCGTCCTCGCCGCAAGCGTGCAAACCTGTCGTTCGATATACGA
CCAAGTTAGGGTCGTCTACAACGCCACCCGATCACCTGGGTGGAGACCGG
CCCCTCCTTTCGAGGAGTGGACGAGCATGGACGATATATGTGACAACGTT
TTCTGCAGAATGCACCTGACTCACTGCGTCCTCGCCGCAAGCGTGCAAAC
CTGTCGTTCGATATACGACCAAGTTAGGGTCGTCTACAACGCCACCCGAT
CACCTGGGTGGAGACCGGCCCCTCCTTTCGAGGAGTGGACGAGCATGGAC
GATATATGTGACAACGTTTTCTGCAGGTCGTTGCAGGCCGAGATCAAAGA
CTCCAATAGTCATTGGAGCGGCGACAGTTTCATCTCCACCGATGTGCGCG
CTACCTCGTCACAATCATCCAGCTGCGACGATAGTTCCTGCCAAGTCGCG
AACGGCGAAGATACCTGCGGGTCGCCACCACTGCCTCTAATGTCAAGGCT
ACATCCTGGTAAACCCTTGAAGTCGTCGGAATCAGCCTCGTTGACGTCAA
CGACGAGGGGTGATCAAACGCTGGCGGGTCCCGTGTCTCTATCCGGAGTC
GATTCTGAAACATCTTCATGGAGCTTCTGCACAAATAGCGCTCTTGCTGG
CGCCGCGGCGGGTAACGCGGAGATGGTTACAACGGCTGAATCGGGGATGC
AGCGGTATGCGCCGGCTGCGGCGGTGGAAGCGGATATCCCTTTGCCCCTC
GCGTCTTGCGAACTCGTCCGCCCCACGCTATCTGCGGCGTTTCCCACTCG
AATCAGTGCCACCAACCCCAGCGCGGGTGCTTTCGTCGGAAGGACAGCCG
ACTATGAACTACCAATGGTCGATCTCGTGGACGCCAGGACAAAAACGCTC
GCCCCGTCGACCGCGGATGGGACTGCCAGGAATGACTTGGCGGTTGGGGC
GAGCGGCGTAGCACTAGAGTCAGACCTCAGCGCGGCCTCGGTGTCATCGA
TTCGAGATTTGAAATATTTGGGCGAGGTGGGAATGAACGGCGCTTCGTGT
GACCTCATAACGGAAGAAGACTTAATGGAAGCCGCAGAATTATTGTTAAG
CGAGAGGCTTCTCGAGTTTGAGCCTGATCGTGAAAGCGCAAGGTGCGTCG
GCTGAGTCGTTGCAGGCCGAGATCAAAGACTCCAATAGTCATTGGAGCGG
CGACAGTTTCATCTCCACCGATGTGCGCGCTACCTCGTCACAATCATCCA
GCTGCGACGATAGTTCCTGCCAAGTCGCGAACGGCGAAGATACCTGCGGG
TCGCCACCACTGCCTCTAATGTCAAGGCTACATCCTGGTAAACCCTTGAA
GTCGTCGGAATCAGCCTCGTTGACGTCAACGACGAGGGGTGATCAAACGC
TGGCGGGTCCCGTGTCTCTATCCGGAGTCGATTCTGAAACATCTTCATGG
AGCTTCTGCACAAATAGCGCTCTTGCTGGCGCCGCGGCGGGTAACGCGGA
GATGGTTACAACGGCTGAATCGGGGATGCAGCGGTATGCGCCGGCTGCGG
CGGTGGAAGCGGATATCCCTTTGCCCCTCGCGTCTTGCGAACTCGTCCGC
CCCACGCTATCTGCGGCGTTTCCCACTCGAATCAGTGCCACCAACCCCAG
CGCGGGTGCTTTCGTCGGAAGGACAGCCGACTATGAACTACCAATGGTCG
ATCTCGTGGACGCCAGGACAAAAACGCTCGCCCCGTCGACCGCGGATGGG
ACTGCCAGGAATGACTTGGCGGTTGGGGCGAGCGGCGTAGCACTAGAGTC
AGACCTCAGCGCGGCCTCGGTGTCATCGATTCGAGATTTGAAATATTTGG
GCGAGGTGGGAATGAACGGCGCTTCGTGTGACCTCATAACGGAAGAAGAC
TTAATGGAAGCCGCAGAATTATTGTTAAGCGAGAGGCTTCTCGAGTTTGA
GCCTGATCGTGAAAGCGCAAGGTGCGTCGGCTGA
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