mRNA_H-elongata_contig60273.13564.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60273.13564.1
Unique NamemRNA_H-elongata_contig60273.13564.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A0D2IVU7_9CHLO (Putative Pre-mRNA-splicing factor 8 like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IVU7_9CHLO)

HSP 1 Score: 174 bits (440), Expect = 2.590e-52
Identity = 85/94 (90.43%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDD +++TFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTY+REAV+ TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY+PK
Sbjct:   88 QAFLRVDDEALKTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYYREAVIHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYSPK 181
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A6H5K085_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K085_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.140e-52
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAV+STQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1334 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVISTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1427
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A836C932_9STRA (NUC071 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C932_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.130e-51
Identity = 89/94 (94.68%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVDDTSIRTFENR+RQ+LMSSGSTTFTKIANKWNTALIGLMTYFREAV++TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1273 QAFLRVDDTSIRTFENRVRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVINTQEVLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1366
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: T1GJN1_MEGSC (U5_2-snRNA_bdg domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GJN1_MEGSC)

HSP 1 Score: 168 bits (425), Expect = 1.680e-50
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S+  F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   39 QCFLRVDDESLGRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 132
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A7S3ZNT2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNT2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 3.300e-50
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1268 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1361
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: F0YIE3_AURAN (MPN domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIE3_AURAN)

HSP 1 Score: 179 bits (454), Expect = 3.300e-50
Identity = 89/94 (94.68%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            QAFLRVD+ S+RTFENR+RQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct: 1264 QAFLRVDEQSLRTFENRVRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 1357
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A0S7ETQ1_9TELE (PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETQ1_9TELE)

HSP 1 Score: 169 bits (427), Expect = 3.300e-50
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S++ F NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:    7 QCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 100
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A822GTF2_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822GTF2_9BILA)

HSP 1 Score: 167 bits (423), Expect = 5.030e-50
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S+  + NR+RQ+LM+SGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:   68 QCFLRVDDESMNRYHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 161
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A3P6P388_ANISI (U5_2-snRNA_bdg domain-containing protein (Fragment) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A3P6P388_ANISI)

HSP 1 Score: 166 bits (419), Expect = 1.480e-49
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FL+VD+ S+  F NRIRQ+LMSSGSTTFTKI NKWNTALIGLMTYFREAVV+TQE+LDLLVKCENKIQTRIKIGLNSKMP+RFPPVVFYTPK
Sbjct:  119 QCFLKVDEESLLKFHNRIRQILMSSGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPARFPPVVFYTPK 212
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BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Match: A0A7S3Y066_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y066_HETAK)

HSP 1 Score: 176 bits (447), Expect = 2.890e-49
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFREAVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 282
            Q FLRVDD S+R FENRIRQ+LMSSGSTTFTKIANKWNTALIGLMTYFREAVV+TQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
Sbjct:  822 QCFLRVDDYSLRQFENRIRQILMSSGSTTFTKIANKWNTALIGLMTYFREAVVNTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK 915
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60273.13564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2IVU7_9CHLO2.590e-5290.43Putative Pre-mRNA-splicing factor 8 like protein n... [more]
A0A6H5K085_9PHAE3.140e-5298.94MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C932_9STRA5.130e-5194.68NUC071 domain-containing protein n=1 Tax=Tribonema... [more]
T1GJN1_MEGSC1.680e-5087.23U5_2-snRNA_bdg domain-containing protein n=1 Tax=M... [more]
A0A7S3ZNT2_9STRA3.300e-5094.68Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YIE3_AURAN3.300e-5094.68MPN domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A0S7ETQ1_9TELE3.300e-5087.23PRP8 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A822GTF2_9BILA5.030e-5086.17Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A3P6P388_ANISI1.480e-4986.17U5_2-snRNA_bdg domain-containing protein (Fragment... [more]
A0A7S3Y066_HETAK2.890e-4993.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60273contigH-elongata_contig60273:431..1474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.8
Seed ortholog evalue4.9e-45
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930976.7307096-CDS-H-elongata_contig60273:430..5981622930976.7307096-CDS-H-elongata_contig60273:430..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 431..598 +
1691679647.9004278-CDS-H-elongata_contig60273:430..5981691679647.9004278-CDS-H-elongata_contig60273:430..598Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 431..598 +
1622930976.7488868-CDS-H-elongata_contig60273:1342..14741622930976.7488868-CDS-H-elongata_contig60273:1342..1474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 1343..1474 +
1691679647.9221678-CDS-H-elongata_contig60273:1342..14741691679647.9221678-CDS-H-elongata_contig60273:1342..1474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60273 1343..1474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60273.13564.1prot_H-elongata_contig60273.13564.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60273 431..1474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60273.13564.1

>prot_H-elongata_contig60273.13564.1 ID=prot_H-elongata_contig60273.13564.1|Name=mRNA_H-elongata_contig60273.13564.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
QAFLRVDDTSIRTFENRIRQVLMSSGSTTFTKIANKWNTALIGLMTYFRE
AVVSTQEMLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKACLID*
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mRNA from alignment at H-elongata_contig60273:431..1474+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60273.13564.1 ID=mRNA_H-elongata_contig60273.13564.1|Name=mRNA_H-elongata_contig60273.13564.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-elongata_contig60273:431..1474+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTTCTTGAGGGTGGACGATACATCGATCAGGACCTTCGAGAACCG
CATCAGACAGGTCCTCATGTCCTCGGGGAGCACGACTTTCACAAAGATCG
CCAACAAGTGGAACACGGCTCTCATTGGCCTCATGACCTACTTCAGGGAA
GCGGTGGTCAGCACGCAGGTCGGTCGGTCGGTCGATCGATTGGTTGATTG
GTCAGTATCCTGAGATTACTTCGCCTCGCTTACCCATGAGATGATTGGTT
CAAAAACCATTTCTACGAATCATATCTTCGTCACCTGGGTAAAAAAAAAA
AAATGCCAATTTTTTTTCTTCGTGTTATTGAACTCCCGCTATTTAGTGCT
GCTTTTGCTGCGTGATATATAATATCAATGCTTTGCCTTAATATACTTAT
TAATAATATTTTAACCCTTTTGGAACTGGATTTCAAGTTTTATATTGAAT
TTAGTATGTAAAAAAAACAGATCGAGTTCCAGAGGGGTTGAAAATAAAGT
TGGAAACCCGTGTCCACTCCAAGCGCGCGCGCCTCGGCTGTGTCCCACAG
TATAAAATTAAAAATATTAAAAATAATAATAATAATTTAAGAGGAAGACT
AAAAAAATCGACAGAAAAGAAAAAGAAAGACGTAAAAAAAAAGGATAAAA
ATTGAGTTTCTTCGCCTCTCCTCTCTCTCTTTCTCTCTTTGTCTCTCTCT
CTATTTTTGTCTCTTTCTGTCTCTTTTTGTCGCTTTATGTCTTTTTATTT
GTCTCTTTCTGTCTCTTTTTGTCGCTTTCTGTCTCTTTTTGTCGCTTTCT
GTCTCTTTTTCTCTTGGACATAACATAAAGCAATGTCACGCTTGAAGCTA
ATAATGCTTGATTTTTTTTTTTTCCCTTTCCTTCCCCTCTAATCACGCTT
TACCTCTTGCAGGAGATGCTGGACTTGCTAGTCAAATGCGAAAACAAGAT
CCAGACGCGTATTAAGATCGGTCTCAACTCCAAGATGCCCTCTCGTTTTC
CGCCCGTGGTTTTCTACACTCCGAAGGCATGTTTGATTGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60273:431..1474+

>mRNA_H-elongata_contig60273.13564.1 ID=mRNA_H-elongata_contig60273.13564.1|Name=mRNA_H-elongata_contig60273.13564.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig60273:431..1474+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTTCTTGAGGGTGGACGATACATCGATCAGGACCTTCGAGAACCG
CATCAGACAGGTCCTCATGTCCTCGGGGAGCACGACTTTCACAAAGATCG
CCAACAAGTGGAACACGGCTCTCATTGGCCTCATGACCTACTTCAGGGAA
GCGGTGGTCAGCACGCAGCAGGCCTTCTTGAGGGTGGACGATACATCGAT
CAGGACCTTCGAGAACCGCATCAGACAGGTCCTCATGTCCTCGGGGAGCA
CGACTTTCACAAAGATCGCCAACAAGTGGAACACGGCTCTCATTGGCCTC
ATGACCTACTTCAGGGAAGCGGTGGTCAGCACGCAGGAGATGCTGGACTT
GCTAGTCAAATGCGAAAACAAGATCCAGACGCGTATTAAGATCGGTCTCA
ACTCCAAGATGCCCTCTCGTTTTCCGCCCGTGGTTTTCTACACTCCGAAG
GCATGTTTGATTGATTGAGAGATGCTGGACTTGCTAGTCAAATGCGAAAA
CAAGATCCAGACGCGTATTAAGATCGGTCTCAACTCCAAGATGCCCTCTC
GTTTTCCGCCCGTGGTTTTCTACACTCCGAAGGCATGTTTGATTGATTGA
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