mRNA_H-elongata_contig60214.13558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60214.13558.1
Unique NamemRNA_H-elongata_contig60214.13558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A6H5K4Q1_9PHAE (ADK_lid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4Q1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.110e-32
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMKVF 234
            RWIHP SGRSYN F +PP   G+DD TGEPL RRSDDT DKLRSRL AFHQQT+PVID+Y  +GKT NIDA +D  V 
Sbjct:  149 RWIHPASGRSYNIFSNPPKVAGKDDRTGEPLTRRSDDTADKLRSRLTAFHQQTEPVIDYYERAGKTVNIDAKQDKNVI 226
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BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A835ZEX0_9STRA (Adenylate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.370e-31
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDM 225
            RWIHP SGRSYN FF+PP   G+DD TGEPL++R DDT DKLR RLR FH QTQPVIDHY   GK A+IDAS++M
Sbjct:  155 RWIHPASGRSYNVFFNPPKVTGKDDETGEPLIQRGDDTADKLRERLRVFHAQTQPVIDHYAKLGKVASIDASQEM 229
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BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A453SGW0_AEGTS (Adenylate kinase n=2 Tax=Pooideae TaxID=147368 RepID=A0A453SGW0_AEGTS)

HSP 1 Score: 105 bits (263), Expect = 2.820e-27
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGRSY+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH QT+PVID+Y+ +G  AN+ A +  K
Sbjct:   73 RWIHPSSGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHMQTEPVIDYYSKNGLVANLHAEKPPK 148
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BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A0A9GEL1_ARUDO (Adenylate kinase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9GEL1_ARUDO)

HSP 1 Score: 105 bits (263), Expect = 4.930e-27
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGR+Y+T F+PP  PG DDVTGEPL++R DDT + L+SRL AFH+QT+PVID+Y+  G  AN+ A +  K
Sbjct:   94 RWIHPASGRTYHTKFAPPKAPGMDDVTGEPLIQRRDDTAEVLKSRLEAFHRQTEPVIDYYSKKGLVANLHAEKPPK 169
[Close]
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A6P9E6T0_JUGRE (Adenylate kinase n=3 Tax=Juglans regia TaxID=51240 RepID=A0A6P9E6T0_JUGRE)

HSP 1 Score: 103 bits (257), Expect = 8.950e-27
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGR+Y+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH+QT+PVID+Y+  G  AN+ A +  K
Sbjct:   38 RWIHPSSGRTYHTKFAPPKVPGSDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKGIVANLHAEKAPK 113
[Close]
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A0A9JW56_ARUDO (Adenylate kinase n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JW56_ARUDO)

HSP 1 Score: 103 bits (258), Expect = 1.020e-26
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGR+Y+T F+PP  PG DDVTGEPL++R DDT + L+SRL AFH+QT+PVI++Y+  G  AN+ A +  K
Sbjct:   56 RWIHPASGRTYHTKFAPPKTPGVDDVTGEPLIQRRDDTAEVLKSRLEAFHRQTEPVINYYSKKGLVANLHAEKPPK 131
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BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A3B6RIV9_WHEAT (Adenylate kinase n=7 Tax=Triticinae TaxID=1648030 RepID=A0A3B6RIV9_WHEAT)

HSP 1 Score: 105 bits (263), Expect = 2.130e-26
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGRSY+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH QT+PVID+Y+ +G  AN+ A +  K
Sbjct:  155 RWIHPSSGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHMQTEPVIDYYSKNGLVANLHAEKPPK 230
[Close]
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A3B6SJ26_WHEAT (Adenylate kinase n=6 Tax=Triticeae TaxID=147389 RepID=A0A3B6SJ26_WHEAT)

HSP 1 Score: 105 bits (263), Expect = 2.130e-26
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGRSY+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH QT+PVID+Y+ +G  AN+ A +  K
Sbjct:  155 RWIHPSSGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHMQTEPVIDYYSKNGLVANLHAEKPPK 230
[Close]
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A453SGW3_AEGTS (Adenylate kinase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SGW3_AEGTS)

HSP 1 Score: 105 bits (263), Expect = 2.130e-26
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASRDMK 228
            RWIHP SGRSY+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH QT+PVID+Y+ +G  AN+ A +  K
Sbjct:  155 RWIHPSSGRSYHTKFAPPKTPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHMQTEPVIDYYSKNGLVANLHAEKPPK 230
[Close]
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Match: A0A161ZNT4_DAUCS (Adenylate kinase n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161ZNT4_DAUCS)

HSP 1 Score: 102 bits (254), Expect = 2.280e-26
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFHQQTQPVIDHYNASGKTANIDASR 219
            RW+HP SGRSY+T F+PP  PG DDVTGEPL++R DDT   L+SRL AFH+QT+PVID+YN     AN+ A +
Sbjct:   35 RWVHPASGRSYHTKFAPPKAPGVDDVTGEPLIQRKDDTAAVLKSRLDAFHRQTEPVIDYYNKKNVVANLHAEK 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60214.13558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4Q1_9PHAE4.110e-3270.51ADK_lid domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZEX0_9STRA2.370e-3170.67Adenylate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
A0A453SGW0_AEGTS2.820e-2761.84Adenylate kinase n=2 Tax=Pooideae TaxID=147368 Rep... [more]
A0A0A9GEL1_ARUDO4.930e-2760.53Adenylate kinase n=1 Tax=Arundo donax TaxID=35708 ... [more]
A0A6P9E6T0_JUGRE8.950e-2760.53Adenylate kinase n=3 Tax=Juglans regia TaxID=51240... [more]
A0A0A9JW56_ARUDO1.020e-2659.21Adenylate kinase n=1 Tax=Arundo donax TaxID=35708 ... [more]
A0A3B6RIV9_WHEAT2.130e-2661.84Adenylate kinase n=7 Tax=Triticinae TaxID=1648030 ... [more]
A0A3B6SJ26_WHEAT2.130e-2661.84Adenylate kinase n=6 Tax=Triticeae TaxID=147389 Re... [more]
A0A453SGW3_AEGTS2.130e-2661.84Adenylate kinase n=1 Tax=Aegilops tauschii subsp. ... [more]
A0A161ZNT4_DAUCS2.280e-2661.64Adenylate kinase n=1 Tax=Daucus carota subsp. sati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60214contigH-elongata_contig60214:2383..3059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5.5e-26
Seed eggNOG ortholog2880.D7FV44
Preferred nameADK1
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0000166,GO:0000287,GO:0001889,GO:0002244,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0004017,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005773,GO:0005774,GO:0005829,GO:0005929,GO:0006091,GO:0006119,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006166,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006412,GO:0006518,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009141,GO:0009144,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009199,GO:0009200,GO:0009205,GO:0009215,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009719,GO:0009725,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010646,GO:0010648,GO:0015949,GO:0015950,GO:0015951,GO:0016020,GO:0016070,GO:0016208,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019538,GO:0019637,GO:0019692,GO:0019693,GO:0019866,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030554,GO:0031090,GO:0031514,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032878,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0036126,GO:0042221,GO:0042278,GO:0042451,GO:0042455,GO:0042995,GO:0043043,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046060,GO:0046083,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0046940,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048863,GO:0048869,GO:0050145,GO:0050789,GO:0050794,GO:0050896,GO:0055086,GO:0060218,GO:0060322,GO:0061008,GO:0065007,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090036,GO:0090038,GO:0090304,GO:0090407,GO:0097066,GO:0097159,GO:0097223,GO:0097226,GO:0097367,GO:0097729,GO:0098588,GO:0098805,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902531,GO:1902532,GO:2000114
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.3
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionadenylate kinase
Ec32 orthologEc-12_005110.1
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.9757457-CDS-H-elongata_contig60214:2382..25561622930975.9757457-CDS-H-elongata_contig60214:2382..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60214 2383..2556 -
1691679647.6659627-CDS-H-elongata_contig60214:2382..25561691679647.6659627-CDS-H-elongata_contig60214:2382..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60214 2383..2556 -
1622930975.9979105-CDS-H-elongata_contig60214:2984..30591622930975.9979105-CDS-H-elongata_contig60214:2984..3059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60214 2985..3059 -
1691679647.6760275-CDS-H-elongata_contig60214:2984..30591691679647.6760275-CDS-H-elongata_contig60214:2984..3059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60214 2985..3059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60214.13558.1prot_H-elongata_contig60214.13558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60214 2383..3059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60214.13558.1

>prot_H-elongata_contig60214.13558.1 ID=prot_H-elongata_contig60214.13558.1|Name=mRNA_H-elongata_contig60214.13558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
RWIHPGSGRSYNTFFSPPNNPGRDDVTGEPLVRRSDDTVDKLRSRLRAFH
QQTQPVIDHYNASGKTANIDASRDMKVFWRPI*
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mRNA from alignment at H-elongata_contig60214:2383..3059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60214.13558.1 ID=mRNA_H-elongata_contig60214.13558.1|Name=mRNA_H-elongata_contig60214.13558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig60214:2383..3059- (Himanthalia elongata Himel1 dioecious)
AGATGGATCCACCCCGGGTCGGGACGGAGCTACAACACTTTTTTCAGCCC
CCCGAATAACCCAGGGAGGGACGACGTGAGTGATTTCGTTTGCTGGCCCA
CTGTTCGTGCCGATTGTGGATTTCGATGTGGAAGCTTGGAACTCGCCGCG
CGTTTTGCTCCCGACACGAGCGGGATGTCTTTCTGCTAGAAATGGGCGCC
GCTGATAAAAGCAACTGCGCATTATTGTAGCTCTATTGTAGCTCTAATGA
ATCTCTATCCATAAGTGCCGGGTGTAAGGTTTAACGAAGTCGACGGTGCC
TCCAAGTTCTGCGATCCCCCAAAAGACACTATATACACTATACACTATAC
ACACGGTATCCGCCCTTTTCCACCGGGAGAGTCACGGGCACTCCATTCCG
TCCTCCTTATCGTGTCCTTCATTCCTTCGCCGTTAAACATAAGAGGGCAA
TTTTCGATGCCTCACCTTGGTTCTTTCATAATATGCTTTCTCTATCGAGA
TAGGTCACGGGTGAGCCTCTCGTCCGTCGCTCCGACGACACTGTGGATAA
GCTAAGGAGTCGTCTCAGGGCGTTCCACCAGCAGACGCAGCCCGTGATTG
ACCACTACAACGCCAGCGGAAAGACCGCCAACATCGACGCCTCCAGAGAC
ATGAAGGTATTTTGGAGGCCCATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig60214:2383..3059-

>mRNA_H-elongata_contig60214.13558.1 ID=mRNA_H-elongata_contig60214.13558.1|Name=mRNA_H-elongata_contig60214.13558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig60214:2383..3059- (Himanthalia elongata Himel1 dioecious)
AGATGGATCCACCCCGGGTCGGGACGGAGCTACAACACTTTTTTCAGCCC
CCCGAATAACCCAGGGAGGGACGACAGATGGATCCACCCCGGGTCGGGAC
GGAGCTACAACACTTTTTTCAGCCCCCCGAATAACCCAGGGAGGGACGAC
GTCACGGGTGAGCCTCTCGTCCGTCGCTCCGACGACACTGTGGATAAGCT
AAGGAGTCGTCTCAGGGCGTTCCACCAGCAGACGCAGCCCGTGATTGACC
ACTACAACGCCAGCGGAAAGACCGCCAACATCGACGCCTCCAGAGACATG
AAGGTATTTTGGAGGCCCATATAGGTCACGGGTGAGCCTCTCGTCCGTCG
CTCCGACGACACTGTGGATAAGCTAAGGAGTCGTCTCAGGGCGTTCCACC
AGCAGACGCAGCCCGTGATTGACCACTACAACGCCAGCGGAAAGACCGCC
AACATCGACGCCTCCAGAGACATGAAGGTATTTTGGAGGCCCATATAG
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