mRNA_H-elongata_contig60202.13555.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI) HSP 1 Score: 241 bits (616), Expect = 1.760e-72 Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
IF+SWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLA+DGLPPKREVVVYAGMTS QR +YDL RNALRQAL+DM EG +R+SE+N MNQRKVCQHPFLFGEPKDK+TGEYVG+K PE+
Sbjct: 438 IFRSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLAGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEI 573
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE) HSP 1 Score: 241 bits (616), Expect = 1.940e-72 Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
IF+SWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRR+KKDVLA+DGLPPKREVVVYAGMTS QR +YDLV RNALRQAL+DM EG +R+SE+N MNQRKVCQHPFLFGEPKDK+TGEYVG+K PE+
Sbjct: 490 IFRSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRIKKDVLANDGLPPKREVVVYAGMTSWQRGYYDLVGRNALRQALMDMGIEGAARLSEININMNQRKVCQHPFLFGEPKDKMTGEYVGIKNPEI 625
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA) HSP 1 Score: 181 bits (458), Expect = 2.440e-51 Identity = 83/135 (61.48%), Postives = 111/135 (82.22%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPE 405
+F+SWFGF+NIGK+ SV+ IV +++ + +VS+LHEILRPFL+RR+K+DVL ++ +PPKREV+VYAGMT LQR++Y LVE LR L ++ EG + +S++N MNQRKVCQHP+LFGEP+DK TGEYVGV PE
Sbjct: 212 VFRSWFGFRNIGKDISVDQIVSDEEQANVVSQLHEILRPFLLRRLKRDVLQNE-MPPKREVLVYAGMTRLQRTYYSLVEAGTLRDTLCELGIEGAADISQINSNMNQRKVCQHPYLFGEPRDK-TGEYVGVSNPE 344
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A835ZBT7_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBT7_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.060e-46 Identity = 77/135 (57.04%), Postives = 107/135 (79.26%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPE 405
+F+SWF F IGK+ +V+ I+ E+Q +K+V++LHEILRPFL+RR+K+DVL + +PPK E+VVYAGMT LQR++Y LVE LR+ L+++ EG + +S++N MN RKVCQHP+LFGEP+DK +GEYVG PE
Sbjct: 315 VFRSWFRFGTIGKDVTVDKIISEEQQAKVVTRLHEILRPFLLRRLKRDVLQVE-IPPKCEIVVYAGMTRLQRTYYSLVETGTLRETLLELGIEGAAEISQINISMNLRKVCQHPYLFGEPRDK-SGEYVGTTNPE 447
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A7R9U2J9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J9_9STRA) HSP 1 Score: 166 bits (419), Expect = 4.650e-45 Identity = 78/143 (54.55%), Postives = 111/143 (77.62%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKE-----TSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPV--MNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
+FQSWFGF+NIG++ TSVE I+DE+++S+IVSKLH+ILRPFL+RR+K+DVL D +PPKRE+VVY GM+SLQ+ +Y L ++ LRQAL+D+ EG ++ + + M+ R++CQHPFL GEPKD +T Y+GV+ P +
Sbjct: 399 VFQSWFGFRNIGRKKSAAATSVEDILDEEENSRIVSKLHDILRPFLLRRLKRDVL-KDLVPPKREIVVYCGMSSLQQEYYTLCQKKKLRQALIDIGIEGAQQMPDSSGPGGMSLRRICQHPFLLGEPKDPVTNAYIGVQNPNL 540
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A7S3M2I2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2I2_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.880e-43 Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGE 381
+FQSWF FKNIGK+T VE I+ ++ +IV+K+HEILRPF++RR+K + L D LPPKREVVVY GM+SLQR +Y V LR++LV++ EG ++S++N +MNQRKVC HPFLFG+ D TGE
Sbjct: 295 VFQSWFDFKNIGKDTKVEDILSTEEQDRIVTKMHEILRPFVLRRIKTETLG-DKLPPKREVVVYCGMSSLQREYYARVLSGTLRESLVEVGVEGAKKISQINMLMNQRKVCNHPFLFGDLLDASTGE 420
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA) HSP 1 Score: 160 bits (404), Expect = 5.160e-43 Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPE 405
+FQSWFGF+NIGK+T V I+DE+ ++IV+KLHEILRPFL+RR+K++VL +PPK+E+VVYA M+ LQR FY LV++ +LR L EG +S++N MN RKVC HPFLFGEPK G Y+G PE
Sbjct: 412 VFQSWFGFRNIGKDTQVSDIIDEEHKNRIVTKLHEILRPFLLRRLKQNVLVD--MPPKKELVVYAPMSQLQRDFYALVQKGSLRDVLTTWGIEGAKGISQINDCMNLRKVCNHPFLFGEPKTN-EGVYLGEANPE 543
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA) HSP 1 Score: 147 bits (370), Expect = 1.650e-39 Identity = 70/140 (50.00%), Postives = 99/140 (70.71%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKE----TSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
+FQSWFGF++IG TS + I+ EQQ + V+KLHEILRPFL+RR+K+DVL LPPK+EVV+Y+GM+ LQ + DL+E+ +RQ L++ G S++S+ N MN RK HPFLFGEP D ++G ++G P++
Sbjct: 67 VFQSWFGFRDIGSSKQGGTSEDDILAEQQQNSTVTKLHEILRPFLLRRIKRDVLTD--LPPKKEVVIYSGMSKLQSGYADLIEKGTIRQILMNQGISGASKLSQTNKQMNHRKNSNHPFLFGEPIDSVSGLHLGTAHPQL 204
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A7S2K5C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K5C2_9STRA) HSP 1 Score: 145 bits (365), Expect = 4.890e-39 Identity = 68/136 (50.00%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 1 IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
+FQSWFGFK IG++T + +++ Q+ + V+KLH ILRPFL+RRMKKDVL +PPK+EVVVYAGM+ LQ + D +E L++ L+ E G +S+ N +MN RK HPFLFGEP D TG ++G P++
Sbjct: 243 VFQSWFGFKGIGQQTKEDEVLEAQRRDQTVTKLHSILRPFLLRRMKKDVLKD--MPPKKEVVVYAGMSKLQLGYMDQIEAGTLKEMLLAQGIETGKSLSQTNKMMNHRKNANHPFLFGEPIDPNTGIHMGTAHPQL 376
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Match: A0A7S0UK64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UK64_9STRA) HSP 1 Score: 142 bits (358), Expect = 1.110e-38 Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 1 IFQSWFGFKNIG----KETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLASDGLPPKREVVVYAGMTSLQRSFYDLVERNALRQALVDMDFEGGSRVSEMNPVMNQRKVCQHPFLFGEPKDKLTGEYVGVKTPEV 408
+FQSWFGFK+IG K TS E I+ EQ+ +K V+KLHEILRPFL+RR+K DVL +PPK+EVVVY+GM+ LQ + DL+E+ LR L+ +S+ N +MNQRK HPF+FGEP D TG ++G P++
Sbjct: 112 VFQSWFGFKDIGQKSHKGTSEEDIMLEQRKNKTVTKLHEILRPFLLRRVKVDVLKE--MPPKKEVVVYSGMSKLQLGYADLIEKGVLRDELLRQGIADARNLSQTNKMMNQRKNVNHPFMFGEPLDPSTGTHIGTIYPQL 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60202.13555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig60202.13555.1 >prot_H-elongata_contig60202.13555.1 ID=prot_H-elongata_contig60202.13555.1|Name=mRNA_H-elongata_contig60202.13555.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp IFQSWFGFKNIGKETSVESIVDEQQHSKIVSKLHEILRPFLIRRMKKDVLback to top mRNA from alignment at H-elongata_contig60202:1673..3279- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig60202.13555.1 ID=mRNA_H-elongata_contig60202.13555.1|Name=mRNA_H-elongata_contig60202.13555.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1607bp|location=Sequence derived from alignment at H-elongata_contig60202:1673..3279- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig60202:1673..3279- >mRNA_H-elongata_contig60202.13555.1 ID=mRNA_H-elongata_contig60202.13555.1|Name=mRNA_H-elongata_contig60202.13555.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig60202:1673..3279- (Himanthalia elongata Himel1 dioecious)back to top |