mRNA_H-elongata_contig60128.13547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60128.13547.1
Unique NamemRNA_H-elongata_contig60128.13547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 1.300e-89
Identity = 181/369 (49.05%), Postives = 219/369 (59.35%), Query Frame = 1 
Query:    1 LRRNDLFVTMIVREEMARSAGGGEKGMGRGIAASVRETLACGDSRDGAGEQTEENRQRLLESVDALVVARGSGRRFDDDDSFLELWNEAREAAASF--------SVPPLETDGDVAQTRPP--------------------------------------PLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAPTETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGEEAWRGAAAAADYEHEDVTADEVLAKWVLELGSGVIWRPSEVAEVARTLPLARFFLPVEWMTEIVYRGGCSPLEWATTLSRLLPPGGTPTEEELEKEVDEMIERLMTEDPEDGTE 969
            ++R+ LFVTMIV E  +  AGG      RGIAA+V ETLA G   DG G +T+    RLL+SVDALV+AR SG  FDDD  FLE+W+EA +AAAS         +VP  +T  D      P                                          HLG GGHG +VA++L++L+     A       P      T P +      P+L+FGDLRAGDGAAT  TIELCR+RGVQAFS    GG+G EEA +GAAAAADYEHEDVT DEVLAKWV+E+  GV+WRP EV EVAR LPLAR++LP EW++EI  RGGC P  WA TLSRL P  GTP+EE+L  EV+E +  LMT  P+DG E
Sbjct:  330 VKRDHLFVTMIVGESNSAVAGG------RGIAAAVSETLASGRVDDG-GIETDGTATRLLDSVDALVLARESGEYFDDDRLFLEMWDEAHQAAASPPRESTGLPAVPTEQTGLDTPADDDPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLGVGGHGSKVADRLALLVDQSPAAGAAAADVP-----GTVPRKL-----PSLYFGDLRAGDGAATTATIELCRERGVQAFSLECAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMT--PDDGEE 679
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BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Match: A0A6H5L373_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L373_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.440e-29
Identity = 78/166 (46.99%), Postives = 97/166 (58.43%), Query Frame = 1 
Query:  184 SVDALVVARGSGRRFDDDDSFLELWNEAREAAASFSVPPLETDGDVAQTRPPPLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAPTETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGEEAWRGAAAAADYEHEDVT 681
            S D  VV  G GR FD     L   + A E++         ++ D   +R   L  HLG GGHGP+VA++L++L+     A          D   T P +      P+L+FGDLRAGDGAAT  TIELCR+RGVQAFS  Y GG+G EEA +GAAAAADYEHEDV+
Sbjct:   69 SDDNSVV--GEGRPFDFPADSLTADSPAAESSXXXXXXXXGSN-DELDSR---LGSHLGVGGHGPKVADRLALLVDQSPAAGSAA------DVPGTVPRKL-----PSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVS 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSX4_ECTSI1.300e-8949.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L373_9PHAE1.440e-2946.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60128contigH-elongata_contig60128:1648..3565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001760.1
Exons4
Model size987
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60128.13547.1prot_H-elongata_contig60128.13547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60128 1648..3538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.5358543-CDS-H-elongata_contig60128:1647..18241622930974.5358543-CDS-H-elongata_contig60128:1647..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 1648..1824 -
1691679647.242066-CDS-H-elongata_contig60128:1647..18241691679647.242066-CDS-H-elongata_contig60128:1647..1824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 1648..1824 -
1622930974.5536442-CDS-H-elongata_contig60128:2205..23401622930974.5536442-CDS-H-elongata_contig60128:2205..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 2206..2340 -
1691679647.2504961-CDS-H-elongata_contig60128:2205..23401691679647.2504961-CDS-H-elongata_contig60128:2205..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 2206..2340 -
1622930974.568253-CDS-H-elongata_contig60128:2618..30721622930974.568253-CDS-H-elongata_contig60128:2618..3072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 2619..3072 -
1691679647.2639859-CDS-H-elongata_contig60128:2618..30721691679647.2639859-CDS-H-elongata_contig60128:2618..3072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 2619..3072 -
1622930974.5821295-CDS-H-elongata_contig60128:3344..35381622930974.5821295-CDS-H-elongata_contig60128:3344..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 3345..3538 -
1691679647.2742717-CDS-H-elongata_contig60128:3344..35381691679647.2742717-CDS-H-elongata_contig60128:3344..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60128 3345..3538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.5979755-UTR-H-elongata_contig60128:3538..35651622930974.5979755-UTR-H-elongata_contig60128:3538..3565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60128 3539..3565 -
1691679647.2823606-UTR-H-elongata_contig60128:3538..35651691679647.2823606-UTR-H-elongata_contig60128:3538..3565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60128 3539..3565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60128.13547.1

>prot_H-elongata_contig60128.13547.1 ID=prot_H-elongata_contig60128.13547.1|Name=mRNA_H-elongata_contig60128.13547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
MIVREEMARSAGGGEKGMGRGIAASVRETLACGDSRDGAGEQTEENRQRL
LESVDALVVARGSGRRFDDDDSFLELWNEAREAAASFSVPPLETDGDVAQ
TRPPPLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAP
TETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGE
EAWRGAAAAADYEHEDVTADEVLAKWVLELGSGVIWRPSEVAEVARTLPL
ARFFLPVEWMTEIVYRGGCSPLEWATTLSRLLPPGGTPTEEELEKEVDEM
IERLMTEDPEDGTEDDVDD*
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mRNA from alignment at H-elongata_contig60128:1648..3565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60128.13547.1 ID=mRNA_H-elongata_contig60128.13547.1|Name=mRNA_H-elongata_contig60128.13547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1918bp|location=Sequence derived from alignment at H-elongata_contig60128:1648..3565- (Himanthalia elongata Himel1 dioecious)
CTACGTAGAAATGATTTGTTCGTGACCATGATCGTGAGAGAGGAGATGGC
GCGGTCGGCGGGAGGCGGGGAGAAAGGAATGGGACGAGGGATAGCCGCTT
CCGTGCGGGAGACGCTGGCGTGTGGTGACTCTCGCGACGGCGCGGGAGAA
CAGACGGAGGAGAACAGGCAGAGGCTTCTCGAGAGCGTTGACGCGTTGGT
GGTGGCGAGGGGTAGCGGTAGGTGAGTGAGAGAGATAAAAAGAAAGAGAG
AAATAGATCCCCCCGTTCTGTCCTGTCCGCCTGTGGACCACAACGCTGCT
TTTCTACTGACGTTCGGCTCGCGCGCCTCAAAACCCGCCGCGTCCGTCCC
CTCTTTTCTTGGGATGGAAATCCTTTCACTGGCTTCACCTGCTTACCCGG
TGCGGCGTCCCGTGGTCGAATCGGATCGTCGGCCGGATTGGTGGCGGCGG
CGTGGCGTGTGGTCGTTACCCTCTGGATTTAAAATTTCTAAAGGCGCTTC
GACGATGACGACAGCTTCCTCGAGCTGTGGAACGAGGCTCGAGAGGCCGC
CGCCTCTTTCTCCGTACCCCCACTCGAAACAGATGGCGACGTTGCTCAGA
CCAGGCCTCCCCCGCTCGCGCGACACCTGGGGTTTGGAGGACACGGCCCC
CGTGTCGCCGAGAAGCTCTCCATGCTGATGGGAACCCGAGCGCTTGCAGC
GGAGCGTACACAACCGTACCCGCGGGGAGACAAAAACAGCACTGCGCCCA
CGGAAACTCTGGAAATCGTCCCCCCTGCTTTGTTCTTTGGAGACTTGAGG
GCGGGTGACGGCGCCGCCACGGCGAAGACGATCGAGCTTTGTAGGGACCG
AGGTGTGCAGGCGTTTTCCACTCGGTACCTCGGGGGACAGGGTGGAGAGG
AGGCTTGGAGAGGGGCGGCCGCGGCGGCGGACTACGAACACGAAGACGTA
AGCTCTTATTCTCTCTCTCTCGCCATGGGTGCGAAACTAACTTCGCTGTG
CTGATGATATAGCGTGTCGTTGTTGCACCATCACGGATTATAACATCTCC
GTGGAACCACCACCGTTACCACACGATGGTGTTTGATGGTAACAGTTCCG
CCGCATCGCCTCGTCTCATCGAAAACCGATCGGAACTTGCCTCCTTTTCC
TCTCCGCTTATATATGTTTATATTTTACATTGTGCGATCGGTTGGGCGGT
ATCTACTGCCGCGACCGCCTTCCAGGTCACAGCCGACGAGGTGCTGGCAA
AGTGGGTGCTGGAGCTGGGGAGCGGGGTAATTTGGCGCCCGTCGGAGGTC
GCCGAAGTCGCGCGGACGTTGCCGCTCGCGAGGTTCTTCCTCCCCGTGGA
GTGGATGACAGTGAGTCGACGCTAAGAGCCTAGCTGCCGTATCCTTTTGA
TCTGAACAGGAGATTACCAAAAGGGGGAAAAACTAAATGGCGTGATCGCT
GTACGCAGCCATCATTTGGTTTTGCGCTAAAGACCTGTACAGCCGCCGTT
GGGGGACGTTATGCGGGATCTCTAGGAGGCGTTATGCGGACTTGACCAAA
AGCAAGGGCGGGGCGTCCGTGGCGTGCTCATCGAACTCAACCATCAAAAT
AAAAATTCAGAGCTGTGACACGCTATCGAGGGTTTCCACTGAAAGAACAA
AACAAAAACAAGAGGCTGTCACCTCGCGCGATGCCTGCTGTTAGTTAAGA
CACACGCTGGTGAAACCTGCACCGATTAAACAATACACCAGGAAATCGTT
TACAGGGGGGGCTGTTCTCCCCTGGAGTGGGCTACTACACTGTCCAGGCT
TCTGCCGCCAGGTGGCACCCCCACAGAGGAAGAGCTGGAGAAAGAGGTGG
ACGAGATGATCGAGAGACTGATGACGGAAGACCCGGAAGATGGAACCGAA
GACGATGTCGACGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig60128:1648..3565-

>mRNA_H-elongata_contig60128.13547.1 ID=mRNA_H-elongata_contig60128.13547.1|Name=mRNA_H-elongata_contig60128.13547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at H-elongata_contig60128:1648..3565- (Himanthalia elongata Himel1 dioecious)
ATGATCGTGAGAGAGGAGATGGCGCGGTCGGCGGGAGGCGGGGAGAAAGG
AATGGGACGAGGGATAGCCGCTTCCGTGCGGGAGACGCTGGCGTGTGGTG
ACTCTCGCGACGGCGCGGGAGAACAGACGGAGGAGAACAGGCAGAGGCTT
CTCGAGAGCGTTGACGCGTTGGTGGTGGCGAGGGGTAGCGGTAGATGATC
GTGAGAGAGGAGATGGCGCGGTCGGCGGGAGGCGGGGAGAAAGGAATGGG
ACGAGGGATAGCCGCTTCCGTGCGGGAGACGCTGGCGTGTGGTGACTCTC
GCGACGGCGCGGGAGAACAGACGGAGGAGAACAGGCAGAGGCTTCTCGAG
AGCGTTGACGCGTTGGTGGTGGCGAGGGGTAGCGGTAGGCGCTTCGACGA
TGACGACAGCTTCCTCGAGCTGTGGAACGAGGCTCGAGAGGCCGCCGCCT
CTTTCTCCGTACCCCCACTCGAAACAGATGGCGACGTTGCTCAGACCAGG
CCTCCCCCGCTCGCGCGACACCTGGGGTTTGGAGGACACGGCCCCCGTGT
CGCCGAGAAGCTCTCCATGCTGATGGGAACCCGAGCGCTTGCAGCGGAGC
GTACACAACCGTACCCGCGGGGAGACAAAAACAGCACTGCGCCCACGGAA
ACTCTGGAAATCGTCCCCCCTGCTTTGTTCTTTGGAGACTTGAGGGCGGG
TGACGGCGCCGCCACGGCGAAGACGATCGAGCTTTGTAGGGACCGAGGTG
TGCAGGCGTTTTCCACTCGGTACCTCGGGGGACAGGGTGGAGAGGAGGCT
TGGAGAGGGGCGGCCGCGGCGGCGGACTACGAACACGAAGACGCGCTTCG
ACGATGACGACAGCTTCCTCGAGCTGTGGAACGAGGCTCGAGAGGCCGCC
GCCTCTTTCTCCGTACCCCCACTCGAAACAGATGGCGACGTTGCTCAGAC
CAGGCCTCCCCCGCTCGCGCGACACCTGGGGTTTGGAGGACACGGCCCCC
GTGTCGCCGAGAAGCTCTCCATGCTGATGGGAACCCGAGCGCTTGCAGCG
GAGCGTACACAACCGTACCCGCGGGGAGACAAAAACAGCACTGCGCCCAC
GGAAACTCTGGAAATCGTCCCCCCTGCTTTGTTCTTTGGAGACTTGAGGG
CGGGTGACGGCGCCGCCACGGCGAAGACGATCGAGCTTTGTAGGGACCGA
GGTGTGCAGGCGTTTTCCACTCGGTACCTCGGGGGACAGGGTGGAGAGGA
GGCTTGGAGAGGGGCGGCCGCGGCGGCGGACTACGAACACGAAGACGTCA
CAGCCGACGAGGTGCTGGCAAAGTGGGTGCTGGAGCTGGGGAGCGGGGTA
ATTTGGCGCCCGTCGGAGGTCGCCGAAGTCGCGCGGACGTTGCCGCTCGC
GAGGTTCTTCCTCCCCGTGGAGTGGATGACAGTCACAGCCGACGAGGTGC
TGGCAAAGTGGGTGCTGGAGCTGGGGAGCGGGGTAATTTGGCGCCCGTCG
GAGGTCGCCGAAGTCGCGCGGACGTTGCCGCTCGCGAGGTTCTTCCTCCC
CGTGGAGTGGATGACAGAAATCGTTTACAGGGGGGGCTGTTCTCCCCTGG
AGTGGGCTACTACACTGTCCAGGCTTCTGCCGCCAGGTGGCACCCCCACA
GAGGAAGAGCTGGAGAAAGAGGTGGACGAGATGATCGAGAGACTGATGAC
GGAAGACCCGGAAGATGGAACCGAAGACGATGTCGACGATTAAGAAATCG
TTTACAGGGGGGGCTGTTCTCCCCTGGAGTGGGCTACTACACTGTCCAGG
CTTCTGCCGCCAGGTGGCACCCCCACAGAGGAAGAGCTGGAGAAAGAGGT
GGACGAGATGATCGAGAGACTGATGACGGAAGACCCGGAAGATGGAACCG
AAGACGATGTCGACGATTAA
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