mRNA_H-elongata_contig60113.13545.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60113.13545.1
Unique NamemRNA_H-elongata_contig60113.13545.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: D7FU09_ECTSI (Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU09_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 2.460e-137
Identity = 204/283 (72.08%), Postives = 226/283 (79.86%), Query Frame = 1
Query:    1 GKAMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEF------------------VAIDSSPPSS-------------SERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            G+AMEQRYLRWQGWLVRYA+GGS D A PTALLVHGFGASSDQWDRVF++F                     D   P S             ++  VRL+ALDLVGFGHSAKPPL+FSQYSWADCARDVALRVG G FF+AGNSIGGYISMG+AA+C+ELC+G++L+NSAGRIL  E+FQ E T  Y GL+VE+ATRGG+LGAYSA PN ALAVLGTGLFAFLQGRIA+ CRNVYPVNP IVDEGLAENILRDSCDPGA+GVIAAGGKLPFSRSANEML KFG
Sbjct:   85 GQAMEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSXXXXXXXXXXXXXXXXXADGKLPLSGGVGGDLAGDAAAAQEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGGYISMGVAADCKELCRGVVLVNSAGRILDDEEFQTEATVKYGGLSVEEATRGGRLGAYSAPPNAALAVLGTGLFAFLQGRIAETCRNVYPVNPGIVDEGLAENILRDSCDPGAVGVIAAGGKLPFSRSANEMLGKFG 367          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A6H5LA65_9PHAE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA65_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 1.750e-130
Identity = 201/284 (70.77%), Postives = 222/284 (78.17%), Query Frame = 1
Query:    1 GKAMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEF-------------------VAIDSSPPSSSE-------------RRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            G+AMEQRYLRWQGWLVRYA+GGS D A PTALLVHGFGASSDQWDRVF++F                      D   P S +               VRL+ALDLVGFGHSAKPPL+FSQYSWADCARDVALRVG G FF+AGNSIGGYISMG+AA+C+ELC+G++L+NSAGRIL  E+FQ E T  Y GL+VE+ATR G+L AYSA PN ALAVLG GLFAFLQGRIA+ CRNVYPVNP IVDEGLAENILRDSCDPGA+GVIAAGGKLPFSRSANEML KFG
Sbjct:  351 GQAMEQRYLRWQGWLVRYALGGSGDAAAPTALLVHGFGASSDQWDRVFEQFSPSLSPFSSXXXXXXXXXXXTADGKLPLSDDVGGDLGGDAAAALEGVRLLALDLVGFGHSAKPPLSFSQYSWADCARDVALRVGGGPFFIAGNSIGGYISMGVAADCKELCRGVVLVNSAGRILDDEEFQTEATVKYGGLSVEEATRRGRLEAYSAPPNAALAVLGAGLFAFLQGRIAETCRNVYPVNPGIVDEGLAENILRDSCDPGAVGVIAAGGKLPFSRSANEMLGKFG 634          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S2UUB3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUB3_9STRA)

HSP 1 Score: 270 bits (691), Expect = 8.940e-87
Identity = 134/246 (54.47%), Postives = 170/246 (69.11%), Query Frame = 1
Query:   19 RYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            +Y +W GWL RYA+GG+ D   P  LLVHGFGAS +QW  VF++             +  ++ ALDL+GFGHS KPPL FSQY+W D  RD A ++ +  F VAGNSIGG+ +M +AA+  + C+G++LINSAG+ILT E ++ E+ +   G  +E+ TR G LG Y A PN  L   G  +F+FLQGRI K C N+YP NPD V  GLAE+ILRDSCDPGAIGVIAAGGKLP  R ANE+L+KFG
Sbjct:   46 KYWKWNGWLCRYAVGGNADSQAPPLLLVHGFGASVEQWKGVFEQL-----------SQEYQVYALDLIGFGHSQKPPLCFSQYTWQDQVRDFATQIIQKPFVVAGNSIGGFTAMSVAADSSQNCKGLVLINSAGKILTPEQYEEEL-EMQGGRTIEEKTRVGDLGPYRAPPNFVLQAFGFLIFSFLQGRIEKTCMNLYPTNPDPVKNGLAESILRDSCDPGAIGVIAAGGKLPTPRPANELLQKFG 279          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A836C8C6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C6_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.420e-79
Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 1
Query:   97 LVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRV--RLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            +VHGFG S+DQW R F+            SE R   RL A+DL+GFGHSAKPPLT+SQY+W+DC RD  L++ +  FFVAGNSIGGY SMG AA+   LCQGI+L+NSAGR+LT  D  AE  K + G+ VE+AT   KL  YSA PN  L+ + T +FA LQGRI + C+++YPV P+ VD GLA+NILRDS DPGA+G+  AG KLP+SRSANEML KFG
Sbjct:    1 MVHGFGGSADQWARCFE------------SELRATHRLFAIDLLGFGHSAKPPLTYSQYTWSDCVRDFGLQIVKTPFFVAGNSIGGYTSMGTAADTPGLCQGIVLLNSAGRLLTPADLIAE-KKKFGGVTVEEATLTQKLAPYSAPPNAVLSAISTVIFAGLQGRIRQTCKSLYPVRPERVDGGLADNILRDSKDPGALGIFNAGAKLPYSRSANEMLAKFG 209          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A0G4GX81_VITBC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GX81_VITBC)

HSP 1 Score: 228 bits (580), Expect = 5.560e-66
Identity = 120/252 (47.62%), Postives = 164/252 (65.08%), Query Frame = 1
Query:   10 MEQRYLRWQGWLVRYAIGGSR-DPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRG--GKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            +E RY  W+G+LVRY    ++ DPA P  LLVHGFGAS+DQW +             +  ++   + A+D++GFGHS KP LTF+QY+W    RD  L V RG ++VAGNSIGGY++  LAA+ R+LC+G IL+NSAGR+ T  ++   VT +  G  +E+ATRG    L  YSA P   L +  TGL+ +L+ +   IC+ +YP N   V++G+ + ILRDS DPGAIGVIA+G KLP  RS NE++ KFG
Sbjct:  436 LETRYYHWRGFLVRYIKSATQHDPAKPKVLLVHGFGASADQWRKTM-----------AVLQQHYEVFAIDMLGFGHSEKPRLTFTQYTWESLLRDFVLEVVRGPYYVAGNSIGGYMAQSLAADTRDLCRGTILLNSAGRVFTPAEY-VNVTASLGG-TMEEATRGYAQPLPPYSAPPERLLQLFATGLYLYLKTQTPSICKRLYPTNGTAVEDGIIDCILRDSADPGAIGVIASGAKLPPQRSHNELIAKFG 674          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: I2CPL0_NANGC (Alpha beta hydrolase fold protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL0_NANGC)

HSP 1 Score: 213 bits (542), Expect = 5.920e-65
Identity = 115/242 (47.52%), Postives = 153/242 (63.22%), Query Frame = 1
Query:   55 AIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAI-DSSPP-------SSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            A GG  D   PT LLVHGFGAS+DQW + F E   + D + P       +   R VR+ ALDL+GFGHS KP +T++QY W D  RD AL V +  FF+AGNSIGG+ +  +AA+   LCQG+ILIN+AG++ + E + AE+     G  VE+ TR   L  +S  P   L     GLF +LQ R+ +IC+++Y  +P  V   L  NI+RDSCDPGA+GV A+GG+LP  RS NE++ KFG
Sbjct:    1 AEGGGEDM--PTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGGFTAASVAADIGPLCQGLILINTAGKVTSPEAYAAELASRA-GRTVEETTRSASLPPFSGPPKAVLTAFSAGLFWYLQPRVEQICKDLYRHSPQEVGPRLVNNIVRDSCDPGALGVFASGGRLPSPRSTNELMAKFG 239          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A4D9CZF8_9STRA (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF8_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.190e-61
Identity = 125/280 (44.64%), Postives = 168/280 (60.00%), Query Frame = 1
Query:   13 EQRYLRWQGWLVRYAI------------GGS------RDPAD------PTALLVHGFGASSDQWDRVFDEFVAI-DSSPP-------SSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            E +Y R+ G  VRYA+            GGS      + PA+      PT LLVHGFGAS+DQW + F E   + D + P       +   R VR+ ALDL+GFGHS KP +T++QY W D  RD AL V +  FF+AGNSIGG+ +  +AA+   LCQG+ILIN+AG++ + E + AE+T    G  VE+ TR   L  +S  P   L     GLF +LQ R+ +IC+++Y  +P  V   L  NI+RDSCDPGA+GV A+GG+LP  RS NE++ KFG
Sbjct:  561 EFKYWRFHGHNVRYAVSKPHMASGKSGSGGSGPEDQGQVPAEGGGEDVPTLLLVHGFGASADQWSKCFLELRRMGDPAHPHFDPAFHARFPRGVRVFALDLLGFGHSEKPSVTYTQYLWQDQVRDFALEVLQSPFFIAGNSIGGFTAASVAADIGPLCQGLILINTAGKVTSPEAYAAELTSRA-GRTVEETTRSASLPPFSGPPKAVLTAFSAGLFWYLQPRVEQICKDLYRHSPQEVGPRLVNNIVRDSCDPGALGVFASGGRLPSPRSTNELMAKFG 839          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S1IML3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IML3_9EUGL)

HSP 1 Score: 208 bits (529), Expect = 4.220e-59
Identity = 111/250 (44.40%), Postives = 153/250 (61.20%), Query Frame = 1
Query:   10 MEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAEC-RELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            M+ RY R  G+L RYA+GG +    P  +LVHGFGAS+DQW   F E           S+  V + A+DL+GFGH  KP ++++QY W D  +  A  V R   FVAGNSIGGY ++  A    +   +G++L+NSAGR++T E+++ E+ +    +        G++G Y  LPN  LA  G  LFA+LQ  I  IC+NVYP NPD VD+ L  NI RDS DPGA+GV+ +G KLP  R+ NE+ E++G
Sbjct:  403 MQFRYWRHNGFLSRYAVGGEQS-GGPAIILVHGFGASADQWHHQFAEL----------SKDHV-VYAIDLLGFGHGEKPAISYTQYFWEDQVKAFAAEVVRRPHFVAGNSIGGYTALSAATGLGKAYAKGVVLLNSAGRMITQEEYERELAENGGTVKQRMMGEAGEIGMYKPLPNWLLATGGKALFAYLQPSIGSICKNVYPNNPDAVDDRLTSNIFRDSEDPGALGVMTSGAKLPPPRTKNELFEEYG 640          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A7S1EEH2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EEH2_HEMAN)

HSP 1 Score: 190 bits (482), Expect = 2.430e-54
Identity = 105/250 (42.00%), Postives = 145/250 (58.00%), Query Frame = 1
Query:    7 AMEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG 756
            A   +Y +WQG +VRYA GG+     P  L VHGFGAS+DQW +   E  +             ++ A+DL+GFGHSAKP +T+SQY W D  RD AL V     +++GNSIGGY +M  A++ +  C+G+IL NSAGRI+ AE F AE  +   G  V+   R     A  + P  AL   G  + A L+  +   C+ VYP +P+ V   L ++I+RDS DPG   ++AAG KLP   + NE+L +FG
Sbjct:  137 AFAYKYFKWQGHMVRYAEGGNEQ--GPAVLFVHGFGASADQWHKCIKELGSTH-----------KVYAIDLLGFGHSAKPIVTYSQYLWEDVVRDFALEVVSRPLYLSGNSIGGYTAMSAASQLKGFCRGLILCNSAGRIVDAETFAAEERER--GGTVKATLRREGAPAKESPPQWALNWAGRAIIAGLRPNVESFCKKVYPNSPEQVTPRLVDSIVRDSKDPGGFSILAAGFKLPPQATKNELLREFG 371          
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Match: A0A0G4HSB7_9ALVE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HSB7_9ALVE)

HSP 1 Score: 185 bits (469), Expect = 5.310e-50
Identity = 108/261 (41.38%), Postives = 147/261 (56.32%), Query Frame = 1
Query:    1 GKAMEQRYLRWQGWLVRY-----AIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVAIDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVGRGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVTKTYDGLNVEDATR-----GGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNVYPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKF 753
            G  +E  Y RWQG LVRY     +   +  P  P  +LVHGFGAS +Q+ ++           P  +     + ALDL+GFGH+ KP LT+SQY W    R   L +  G   +AGNSIGGY+SMG  A+     +G++L+NSAGR++ +  F+ E  +   G +VE ATR     G  +G +   P   L   G  LF +L     KI ++VYPV P+  + GL + ILRD+ DPGAIGVIA+G KLP  R  NE+L +F
Sbjct:  510 GDGIEYSYYRWQGNLVRYCRCPPSNQKAGSPKRPKIVLVHGFGASCEQYSKLM----------PLLAAEGFEVFALDLLGFGHAEKPRLTYSQYLWEGQIRHFVLSLVGGDAVLAGNSIGGYLSMGAGADLGGASRGVVLLNSAGRVIESGAFEEEERER--GCSVETATREYKQRGDSIGPFKPFPERLLRAFGAALFVYLSTSTEKIVKSVYPVFPEEAEGGLVDAILRDAGDPGAIGVIASGRKLPPQRCQNELLRRF 758          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60113.13545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU09_ECTSI2.460e-13772.08Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5LA65_9PHAE1.750e-13070.77Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A7S2UUB3_9STRA8.940e-8754.47Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A836C8C6_9STRA1.420e-7958.56Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A0G4GX81_VITBC5.560e-6647.62Photolyase/cryptochrome alpha/beta domain-containi... [more]
I2CPL0_NANGC5.920e-6547.52Alpha beta hydrolase fold protein (Fragment) n=1 T... [more]
A0A4D9CZF8_9STRA1.190e-6144.64Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A7S1IML3_9EUGL4.220e-5944.40Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1EEH2_HEMAN2.430e-5442.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0G4HSB7_9ALVE5.310e-5041.38Photolyase/cryptochrome alpha/beta domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60113contigH-elongata_contig60113:248..3095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue5.4e-109
Seed eggNOG ortholog2880.D7FU09
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionphotolyase 1
Ec32 orthologEc-11_003520.1
Exons4
Model size756
Cds size747
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60113.13545.1prot_H-elongata_contig60113.13545.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60113 248..3086 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.3554006-CDS-H-elongata_contig60113:247..3851622930974.3554006-CDS-H-elongata_contig60113:247..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 248..385 -
1691679647.1649055-CDS-H-elongata_contig60113:247..3851691679647.1649055-CDS-H-elongata_contig60113:247..385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 248..385 -
1622930974.3764393-CDS-H-elongata_contig60113:1312..15121622930974.3764393-CDS-H-elongata_contig60113:1312..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 1313..1512 -
1691679647.178453-CDS-H-elongata_contig60113:1312..15121691679647.178453-CDS-H-elongata_contig60113:1312..1512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 1313..1512 -
1622930974.3882306-CDS-H-elongata_contig60113:1794..18651622930974.3882306-CDS-H-elongata_contig60113:1794..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 1795..1865 -
1691679647.197827-CDS-H-elongata_contig60113:1794..18651691679647.197827-CDS-H-elongata_contig60113:1794..1865Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 1795..1865 -
1622930974.4032116-CDS-H-elongata_contig60113:2748..30861622930974.4032116-CDS-H-elongata_contig60113:2748..3086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 2749..3086 -
1691679647.207784-CDS-H-elongata_contig60113:2748..30861691679647.207784-CDS-H-elongata_contig60113:2748..3086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60113 2749..3086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.4203954-UTR-H-elongata_contig60113:3086..30951622930974.4203954-UTR-H-elongata_contig60113:3086..3095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60113 3087..3095 -
1691679647.2182963-UTR-H-elongata_contig60113:3086..30951691679647.2182963-UTR-H-elongata_contig60113:3086..3095Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60113 3087..3095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60113.13545.1

>prot_H-elongata_contig60113.13545.1 ID=prot_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp
MEQRYLRWQGWLVRYAIGGSRDPADPTALLVHGFGASSDQWDRVFDEFVA
IDSSPPSSSERRVRLVALDLVGFGHSAKPPLTFSQYSWADCARDVALRVG
RGAFFVAGNSIGGYISMGLAAECRELCQGIILINSAGRILTAEDFQAEVT
KTYDGLNVEDATRGGKLGAYSALPNIALAVLGTGLFAFLQGRIAKICRNV
YPVNPDIVDEGLAENILRDSCDPGAIGVIAAGGKLPFSRSANEMLEKFG
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mRNA from alignment at H-elongata_contig60113:248..3095-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60113.13545.1 ID=mRNA_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2848bp|location=Sequence derived from alignment at H-elongata_contig60113:248..3095- (Himanthalia elongata Himel1 dioecious)
GGTAAGGCGATGGAGCAGCGATACCTCCGCTGGCAAGGTTGGCTCGTACG CTACGCCATAGGCGGCAGCAGAGATCCTGCCGACCCAACCGCCCTCCTGG TGCACGGCTTCGGAGCCTCGTCCGACCAATGGGATCGCGTGTTCGACGAA TTTGTAGCCATCGACTCTAGTCCTCCGTCGTCCTCTGAGCGGCGGGTGAG GCTTGTGGCGCTCGACCTGGTCGGGTTTGGCCACTCGGCGAAGCCTCCGT TGACGTTCTCGCAGTACTCGTGGGCGGACTGCGCCAGAGACGTGGCTCTG AGAGTCGGCCGGGGGGCCTTCTTCGTCGCCGGCAACTCGATCGGCGGGTG AGTGCAAATCCATACATACACGTACACCCTGCAGATGCGTGTGTTTTGTG TGTATCTGTGGGCGCGCTTTTTTTAATGTTATTTAAGGAAATACAGTCAG ATTTGTATAAAAATAGAGGCGCATAATAATTGGTCCATGGAGTTACCTGA AAAGGCAGCACCCGTTACTCAAGCTACCTTGAGGACTATTGGCTTAGTAC CGGCGGACTCTCGGTGGTAAACGCCATCGTTACGCAATTGCGTAATCTGA TGAAATCGGGATTGACCTGATGGCGGACCGTCGCGGAAAACAAGAGGATC GATAGGATCTCGGGAGTACGCACCGAATTCAGCCTGGGTTGGGAGAATGA CCAGGCTTACGCGGGATGGAAAGGCCGAACCCGTCTCGCGAGACCAAATT CTCAGACACGAACAGGATCAGGGAAAATCATTTTCCCCTCTTTATCAAAT TGCATTAGACCGCGCAGACCGGCATTACTGTACACATAAGGGGGGCACCA CGCCGGTTTGAAAATACTCCCCCCCCTTATCATTATGGGGAGCTAGCTAT CCCTGAAGACGTTGGATTGGCCTATCCTACTCGCGTTGCTTACGCAACTG CGCCGGACTACCGCTATAACTCTCCCTCCTGCCCCCGCTGCCCCACCTCT GGGCACAACACCCCAGGACATTGGCGCTTCGAATGACATCATCCTGTTAA GCTATATGTATATGTGATATGATGACCACACACACTACGATATAATGTTA CCATGTATTGACATCGCCTTCTTGGGTTCGGAAACCACGCACGAATCGAT GATTGCCCCCCTTGATGCTCTTTCAATTTGTTTGAAAGTAACCGGTTGGA AATAATGTGTGTCGTCGTGAAACGGACAAGGTATATCTCGATGGGACTGG CAGCGGAGTGCAGGGAGCTCTGTCAGGGTATCATCCTTATCAACAGTGCA GGTGCTTCACGCAATCCATCTTCGAAACTTGGCCGCGTTCTGGGACGAGT ACTACTGTAGAAGCGGTCTATACTGTTCGCAATGTCGTTTTGATATTATA AGAAATGGTATATAATATTTTTGCGAACTCTCGAATTTTCCACTGACTTT TCAAAATTTTGAATTTCCAAAATTGAATTTCGATCTTTGATTTTTTAAAT CGGACATTATATATTTGGAATTATTGAAGTTCCAGGACAAATGATAAATT TATTTTTCTTCTCTGAACCCTCTATATATTCAGGGCGCATTCTGACCGCG GAAGATTTTCAGGCTGAGGTGACGAAGACGTACGATGGTCTCAACGTCGA GGACGCCACTCGGGGCGGGAAGCTCGGGGCTTACTCTGCTCTCCCGAACA TAGCCCTCGCTGTGCTTGGTACCGGACTATTCGCCTTCCTCCAAGGGCGT ATTGCAAAAATATGTCGAAACGTTTATCCCGTGGTGGGTGCTGGGTACTC CGATATTGTATGTGACTGTATCGGTCTGTCTATCGAAAAAAAGAGGCGTA CAATAATTGGACCATGGGGTTACCTGAATAGGCTTGCACCCGTTACTCAA GCTACCTTGAAGACTATTGGCTCAGTGCCGGCGGACTCTCGGTGATAAAC GCCATCAGTACGCAATTGCATGACCTGTTGAAATCGGGATTGGCCCGATG GCGATTGACGGTAGAGATGGACGCCGTCGCGGAAAACGAGAGGATCGAGA GGATCCCGGGAGTACACACCATATTCAGCCTGGGTTGATAGAATGAGGCT CACGCGTGACGGGACTGCCGAACCCGTCTCTCTAGACCAAATTCTCAGGC GCGAATGGTGACAGGAAAACATTAATTTCCCCTGTTCAGCTGACCACAAG CAGGATGCAGCCAATTCCGGTTGATGTTATCCTGCTGAAAGTTTGATGAC GTCATGGCCTTGTTATTTTCTAGCCACGCCGTATTTCGCCTTTTTACCCC TCTCATCCCTAATGTTTCGTGTCACGACGCCTTCCTTGAGCTCGGGATTT TCATGATATATAGGATTATATTTTAATTGAGAATGTTTGCAATTTCGTGG CTATTGAGTACACAAGCAAAACCCGATATTTCGTACCGAAGTCGTCGTCC GAACGATCTTTCAGCAACATGAGCGTGTGTACCAGGTGTATGCCCTCTTG AGGAGAAGCAATCTACTGCCGTTACATTTTCGCTGTTAAGTAGCGACGTT GATATCGACAGGTCGAGCAGAGGACGATTGTATGCTTCCACTTGGTCAGA AGAGCTGGTCGCACGCGTGATACTTACAATGATATGCGATACTTACAATG ATATGCCTCCTCGTATGTATAATATGTTATATCATACGGATGCGTGAAAA TGGCCGCTAGAATCCGGACATTGTCGACGAAGGCCTGGCGGAGAACATAC TGCGAGACTCGTGCGATCCTGGGGCTATTGGAGTGATCGCTGCCGGTGGC AAGCTTCCCTTCTCGCGGTCGGCGAACGAGATGCTCGAAAAGTTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig60113:248..3095-

>mRNA_H-elongata_contig60113.13545.1 ID=mRNA_H-elongata_contig60113.13545.1|Name=mRNA_H-elongata_contig60113.13545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig60113:248..3095- (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGCGATACCTCCGCTGGCAAGGTTGGCTCGTACGCTACGCCAT
AGGCGGCAGCAGAGATCCTGCCGACCCAACCGCCCTCCTGGTGCACGGCT
TCGGAGCCTCGTCCGACCAATGGGATCGCGTGTTCGACGAATTTGTAGCC
ATCGACTCTAGTCCTCCGTCGTCCTCTGAGCGGCGGGTGAGGCTTGTGGC
GCTCGACCTGGTCGGGTTTGGCCACTCGGCGAAGCCTCCGTTGACGTTCT
CGCAGTACTCGTGGGCGGACTGCGCCAGAGACGTGGCTCTGAGAGTCGGC
CGGGGGGCCTTCTTCGTCGCCGGCAACTCGATCGGCGGATGGAGCAGCGA
TACCTCCGCTGGCAAGGTTGGCTCGTACGCTACGCCATAGGCGGCAGCAG
AGATCCTGCCGACCCAACCGCCCTCCTGGTGCACGGCTTCGGAGCCTCGT
CCGACCAATGGGATCGCGTGTTCGACGAATTTGTAGCCATCGACTCTAGT
CCTCCGTCGTCCTCTGAGCGGCGGGTGAGGCTTGTGGCGCTCGACCTGGT
CGGGTTTGGCCACTCGGCGAAGCCTCCGTTGACGTTCTCGCAGTACTCGT
GGGCGGACTGCGCCAGAGACGTGGCTCTGAGAGTCGGCCGGGGGGCCTTC
TTCGTCGCCGGCAACTCGATCGGCGGGTATATCTCGATGGGACTGGCAGC
GGAGTGCAGGGAGCTCTGTCAGGGTATCATCCTTATCAACAGTGCAGGTA
TATCTCGATGGGACTGGCAGCGGAGTGCAGGGAGCTCTGTCAGGGTATCA
TCCTTATCAACAGTGCAGGGCGCATTCTGACCGCGGAAGATTTTCAGGCT
GAGGTGACGAAGACGTACGATGGTCTCAACGTCGAGGACGCCACTCGGGG
CGGGAAGCTCGGGGCTTACTCTGCTCTCCCGAACATAGCCCTCGCTGTGC
TTGGTACCGGACTATTCGCCTTCCTCCAAGGGCGTATTGCAAAAATATGT
CGAAACGTTTATCCCGTGGGCGCATTCTGACCGCGGAAGATTTTCAGGCT
GAGGTGACGAAGACGTACGATGGTCTCAACGTCGAGGACGCCACTCGGGG
CGGGAAGCTCGGGGCTTACTCTGCTCTCCCGAACATAGCCCTCGCTGTGC
TTGGTACCGGACTATTCGCCTTCCTCCAAGGGCGTATTGCAAAAATATGT
CGAAACGTTTATCCCGTGAATCCGGACATTGTCGACGAAGGCCTGGCGGA
GAACATACTGCGAGACTCGTGCGATCCTGGGGCTATTGGAGTGATCGCTG
CCGGTGGCAAGCTTCCCTTCTCGCGGTCGGCGAACGAGATGCTCGAAAAG
TTCGGGAATCCGGACATTGTCGACGAAGGCCTGGCGGAGAACATACTGCG
AGACTCGTGCGATCCTGGGGCTATTGGAGTGATCGCTGCCGGTGGCAAGC
TTCCCTTCTCGCGGTCGGCGAACGAGATGCTCGAAAAGTTCGGG
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