mRNA_H-elongata_contig60069.13540.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60069.13540.1
Unique NamemRNA_H-elongata_contig60069.13540.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60069.13540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60069contigH-elongata_contig60069:2003..2993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60069.13540.1prot_H-elongata_contig60069.13540.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60069 2003..2980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.8952053-CDS-H-elongata_contig60069:2002..23411622930973.8952053-CDS-H-elongata_contig60069:2002..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60069 2003..2341 -
1691679647.0109541-CDS-H-elongata_contig60069:2002..23411691679647.0109541-CDS-H-elongata_contig60069:2002..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60069 2003..2341 -
1622930973.9179633-CDS-H-elongata_contig60069:2920..29801622930973.9179633-CDS-H-elongata_contig60069:2920..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60069 2921..2980 -
1691679647.0206664-CDS-H-elongata_contig60069:2920..29801691679647.0206664-CDS-H-elongata_contig60069:2920..2980Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60069 2921..2980 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.9354076-UTR-H-elongata_contig60069:2980..29931622930973.9354076-UTR-H-elongata_contig60069:2980..2993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60069 2981..2993 -
1691679647.0302775-UTR-H-elongata_contig60069:2980..29931691679647.0302775-UTR-H-elongata_contig60069:2980..2993Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60069 2981..2993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60069.13540.1

>prot_H-elongata_contig60069.13540.1 ID=prot_H-elongata_contig60069.13540.1|Name=mRNA_H-elongata_contig60069.13540.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MRMRPCDACGYPVELQRLREAMAKLTGFIEKWASFQLKTGGQATIPRWTR
SLEARAEVASRWKAFISPHDAPETTANGTAAAAAAFTTTVVAETQAVDAA
GSGSSELVHGTRDKESLSARTSTITAVVADDAA
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mRNA from alignment at H-elongata_contig60069:2003..2993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60069.13540.1 ID=mRNA_H-elongata_contig60069.13540.1|Name=mRNA_H-elongata_contig60069.13540.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=991bp|location=Sequence derived from alignment at H-elongata_contig60069:2003..2993- (Himanthalia elongata Himel1 dioecious)
CCTGACGTGTTTGATGCGGATGAGACCTTGCGACGCGTGCGGGTACCCAG
TCGAGCTCCAACGACTCCGTGAGGTAGCCACGCAAGATGGTAGTGGAACT
CCCTCGGTAGTAATTTTAGTATGACGGCCGGTGCTGTGTGCACCCCGGCC
CACGGCGAAAGTGATCGCGAGTAAGCGCGGTCCAGTGATTGACTGGGCGA
GGACGACGCGACGCGGGGAACGGTCGTGGCTCATTCTTTATCGCGATCGG
GGTGACGAGTTGCCCTTTTCTTTGCTTCTCCGTGCCGAACCGCAAGAGAT
CAAATGTTACGATAGAAGCGTCCATGAAGTATTAGCGTCGTGGAACGCGC
CTGCGCGTGTGGAACAGGGCTTAGGGGTCCCCTGGACTGCACCTCTCACG
GTGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATGAGTTCAAGGTTTT
TTAATAATAATACTCCACATTGTCGAAGATGCGTTATATTTGGAAACCCG
TCGTCTTGGAACCTCCCTCTCGCGCCGGTCTGGCAGAGCGATTTGGAGAG
GCGGGGGTTCTAAATTCCATGTGGGGCGCTCGCCGGTCAATTAAGACTTC
TGCTAGTAAGCTGTTGTAATCTCTCATGTTGGACTCTTGCGTTCGTGTCC
AGGCCATGGCGAAGCTAACGGGTTTCATAGAAAAGTGGGCGTCCTTCCAG
CTGAAAACGGGGGGCCAAGCGACCATCCCGCGGTGGACGCGGTCGCTCGA
GGCGCGCGCCGAAGTCGCTTCGCGCTGGAAGGCGTTTATCTCCCCCCACG
ACGCACCTGAAACCACCGCGAACGGTACAGCTGCTGCCGCCGCTGCTTTT
ACTACGACGGTGGTGGCAGAGACCCAAGCGGTGGATGCTGCGGGGTCAGG
GTCGTCGGAATTGGTGCACGGGACGAGAGATAAAGAGAGCCTTTCAGCGC
GGACCTCGACTATCACTGCCGTCGTTGCTGATGACGCCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig60069:2003..2993-

>mRNA_H-elongata_contig60069.13540.1 ID=mRNA_H-elongata_contig60069.13540.1|Name=mRNA_H-elongata_contig60069.13540.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig60069:2003..2993- (Himanthalia elongata Himel1 dioecious)
ATGCGGATGAGACCTTGCGACGCGTGCGGGTACCCAGTCGAGCTCCAACG
ACTCCGTGAGATGCGGATGAGACCTTGCGACGCGTGCGGGTACCCAGTCG
AGCTCCAACGACTCCGTGAGGCCATGGCGAAGCTAACGGGTTTCATAGAA
AAGTGGGCGTCCTTCCAGCTGAAAACGGGGGGCCAAGCGACCATCCCGCG
GTGGACGCGGTCGCTCGAGGCGCGCGCCGAAGTCGCTTCGCGCTGGAAGG
CGTTTATCTCCCCCCACGACGCACCTGAAACCACCGCGAACGGTACAGCT
GCTGCCGCCGCTGCTTTTACTACGACGGTGGTGGCAGAGACCCAAGCGGT
GGATGCTGCGGGGTCAGGGTCGTCGGAATTGGTGCACGGGACGAGAGATA
AAGAGAGCCTTTCAGCGCGGACCTCGACTATCACTGCCGTCGTTGCTGAT
GACGCCGCGGCCATGGCGAAGCTAACGGGTTTCATAGAAAAGTGGGCGTC
CTTCCAGCTGAAAACGGGGGGCCAAGCGACCATCCCGCGGTGGACGCGGT
CGCTCGAGGCGCGCGCCGAAGTCGCTTCGCGCTGGAAGGCGTTTATCTCC
CCCCACGACGCACCTGAAACCACCGCGAACGGTACAGCTGCTGCCGCCGC
TGCTTTTACTACGACGGTGGTGGCAGAGACCCAAGCGGTGGATGCTGCGG
GGTCAGGGTCGTCGGAATTGGTGCACGGGACGAGAGATAAAGAGAGCCTT
TCAGCGCGGACCTCGACTATCACTGCCGTCGTTGCTGATGACGCCGCG
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