mRNA_H-elongata_contig60047.13539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60047.13539.1
Unique NamemRNA_H-elongata_contig60047.13539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A6H5JKS6_9PHAE (GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS6_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 2.590e-158
Identity = 219/311 (70.42%), Postives = 261/311 (83.92%), Query Frame = 2
Query:    2 TEFMRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEA-----LPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQLKKRGWPLWEIFGLLLFYIFEGIKMIAALIALVTEGSDSEVVRLSIKAFRQHLTLLGALL 919
            TEFMRRK+  EGW+T+LGVWGRGVDPDLFSPARR Q LRRQLGLGP+D+AALWLGRVV EK+P VWLRAV +VQREA+ERYDAAVAA    ++     LPPRVVG+CVG GEAM  ++G +GV C+GWKAGEELARV+ASCD+MVAPSEIETFGRVTLEAMSCGL CVVNRECGDHLV+D  NGFCVP G++DGYV GLR+LV++K+ R+KMSA GRQMA+GY TT++Y+GM+++YR+C + Q + FR    KKRG+P WE FGLL++Y+FE  KM+ A  A  TEG DSEVVRLS++AFR HL LLG LL
Sbjct:  180 TEFMRRKVQAEGWDTELGVWGRGVDPDLFSPARRCQDLRRQLGLGPDDVAALWLGRVVQEKKPGVWLRAVQQVQREAKERYDAAVAAAAQRDSDSKVPLPPRVVGICVGEGEAMRTLRGVDGVVCVGWKAGEELARVIASCDIMVAPSEIETFGRVTLEAMSCGLPCVVNRECGDHLVQDGSNGFCVPSGDQDGYVEGLRKLVQDKDLRNKMSATGRQMALGYGTTQLYDGMMDIYRSCRETQNKTFRARVAKKRGFPFWEAFGLLIYYVFEAAKMMTAAAAFFTEGRDSEVVRLSVRAFRSHLALLGQLL 490          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S2UTT6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTT6_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.820e-44
Identity = 86/251 (34.26%), Postives = 140/251 (55.78%), Query Frame = 2
Query:    2 TEFMRRKISREGWE--TQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTRE-FRDDQLK 745
            T F+R K+  EG++  T++ +WGRGVD  +F+P+RRSQ  R + G+G  ++  LW+GR+V EK+P +W+    ++                 +E +P +  G+ VG G     M+  E V   GW +GEEL    AS D ++ PS++ETFG VTLEA++ G+ CVV + C  HLV++  NGF  P G+ + + T  +R++ + + R          A  Y  +++ + MLE Y+ C ++   E  R +Q +
Sbjct:  208 TPFIRSKLENEGFDQITRMKIWGRGVDMQIFNPSRRSQEFRSRYGIGAEEVVLLWVGRLVQEKRPEIWVDVARRLT----------------QEGVPFK--GLVVGKGSFQTEMEALENVRVAGWLSGEELGVAYASADCLLFPSDVETFGNVTLEALASGVPCVVEQGCSGHLVENGKNGFTAPSGDVEKFYTATKRIIMDAQLRKSFRPKCVAKAKEYERSKILQRMLEHYKDCHQRHDPEGLRQEQAR 440          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S2S5M5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5M5_9STRA)

HSP 1 Score: 162 bits (409), Expect = 6.890e-42
Identity = 94/254 (37.01%), Postives = 132/254 (51.97%), Query Frame = 2
Query:    2 TEFMRRKISREGWE--TQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDG------------YVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTR 721
            T+FMR K+++EG++  T + +WGRGVD + FSPARRS   RR++G   +DI  +W+GR+V EK+P VW   + K+  E                     + G  VG G       G   +  LGW +G ELA   AS D+++ PS++ETFG VTLEA+ CG+  VV   C  HLV D V GF V  G  D             Y T +R+LV + + R+K +   R  A  YS + V + M++ Y      Q R
Sbjct:  232 TDFMRLKLTKEGYDQFTDMQIWGRGVDLERFSPARRSTAFRRRIGAKDSDIVLIWVGRLVPEKRPDVWRDVLKKLHDEGH------------------AIRGAVVGVGPCQTYFDGIPYIQTLGWMSGVELAEAYASADILLFPSDVETFGNVTLEALGCGIPAVVEENCSRHLVSDGVEGFAVHQGIDDPNDRSQYEACLNRYFTKVRQLVVDPDLRAKCARNARVKADTYSNSMVQQRMIDNYHHALNTQVR 467          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S3HC69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC69_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.670e-41
Identity = 91/246 (36.99%), Postives = 132/246 (53.66%), Query Frame = 2
Query:    2 TEFMRRKISRE---GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTC-DKQQTREF 727
            T +M RK+  E   G  T+L +WGRGVD ++FSP RRSQ  R   G+   DI  LW+ R+V EK+P +W+  V ++Q                +E LP  V  + VG+G     +   +  T  GW +G  L    AS D+++ PS++ETFG VTLEA+S G   VV ++CG+HLV   +NG    CG+ +G+    RRLV +   R KM+ A R+ A  +    + + M E Y+   DK +   F
Sbjct:  208 TTYMLRKMREEWGYGKATELKLWGRGVDMNIFSPERRSQAFRASKGISETDIVILWVSRLVPEKRPDIWMGVVKRLQ----------------DEGLP--VKALVVGSGTFEKYLTTLKDATICGWLSGTSLGEAYASSDILLFPSDVETFGNVTLEALSSGCPAVVEKKCGEHLVDHGINGLTCQCGDAEGFYQATRRLVLDATLRKKMAVAARESAWKFERNIILQQMAENYKDAIDKHRDPAF 435          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7S1TND5_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TND5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.660e-34
Identity = 105/322 (32.61%), Postives = 152/322 (47.20%), Query Frame = 2
Query:    2 TEFMRRKISREGW--ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDG---YVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQ-----------LKKRGWPLWEIFGLLLFYIFEGIKMIAALIALVTEGSDSEVVRLSIKAFRQHLTLLGALL 919
            T F+R K+ R+G    T L +WGRGVD  LF PA RSQ  R + G G +D+  LW+GR+V EK+P V+LR V ++ RE                       G+ VGTG     +  +  +   G+ +G  LA   AS D+++ PS +ETFG VTLEA++ G   VV+  C  HLV+  VNG  V  G+ D    Y    RRLV     RS  ++A R      S   V   ML+ Y    K +     +             + +R + LW I    ++ +   I  +A  ++L  E S  + V+ + KA  +  T L  +L
Sbjct:  365 TPFIRSKLLRDGIGEATTLKIWGRGVDFGLFHPALRSQRFRERYGFGADDVVVLWVGRLVKEKRPDVFLRVVERLNREGF------------------ACKGLVVGTGVYEQPLSLSPHIVTAGFLSGTSLATAYASSDLLLFPSTVETFGNVTLEALAAGCPVVVDANCSGHLVQGGVNGEAVESGDADAAEAYYDATRRLVSNHAYRSGCASASRASVAHCSAEAVQGQMLQNYLEMAKAKGESAPESMAACHATADSRIVSERFYSLWRIAFFFVYPVMSLITGVANALSLC-ECSPCKAVKRNPKAGSRGTTELRIIL 667          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: W7U5T4_9STRA (Glycosyl group 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5T4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.020e-32
Identity = 84/280 (30.00%), Postives = 139/280 (49.64%), Query Frame = 2
Query:    2 TEFMRRKISREGW-ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEV-------YEGMLEVYRTCDKQQTREFRDDQLKKRGWPLWEIFGLLLFYIFEGIKMI 817
            T F+R+++   G+ E ++ +WGRGVD  +F+P  RS   RR  G+  +++  LW+GR+V EK P +W   + ++                D+E L  R +   VG+G     M+       LGW +G  LA V AS D+ + PSE+ETFG VTLEA++ G+ C+ +  C  HLV   VNGF +   + D Y +  R LV     R++ +   R   +      V       YEG+++ Y     +          ++ GW   +++ +L+++ F  + M+
Sbjct:  235 TPFVRKRLVDSGFPENRVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDIWAEVIRRL----------------DQEGLKFRAL--VVGSGSYEEHMKQLPRTEHLGWMSGAALAEVYASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVISRADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEGVVQAYHRPGGEGCNS------RRGGWG--DVYIMLVYHFFSFLMML 488          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A4D9DCA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCA1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.570e-32
Identity = 85/274 (31.02%), Postives = 138/274 (50.36%), Query Frame = 2
Query:    2 TEFMRRKISREGW-ETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQLKKRG-WPLWEIFGLLLFYIFEGIKMI 817
            T F+R+++   G+ E ++ +WGRGVD  +F+P  RS   RR  G+  +++  LW+GR+V EK P +W   + ++                D+E L  R +   VG+G     M+       LGW +G  LA V AS D+ + PSE+ETFG VTLEA++ G+ C+ +  C  HLV   VNGF V   + D Y +  R LV     R++ +   R   +      V + M+  Y    +   R   +    +RG W   +++ +L+++ F  + M+
Sbjct:  235 TPFVRKRLVDSGFPENRVSLWGRGVDLKMFNPNFRSMAFRRGRGIADDEVVILWVGRLVKEKSPDIWAEVIRRL----------------DQEGLKFRAL--VVGSGSYEEHMKKLPRTEHLGWMSGAALAEVYASVDLFLFPSEVETFGNVTLEALASGVPCIASAGCSGHLVHHGVNGFVVCRADVDEYHSLTRELVVNGPLRARFAEKARGSIVSLEHDRVMDMMVANYEGVVQAYHRPGGEGCSSRRGGWG--DVYIMLVYHFFSFLMML 488          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A7U4J927_9SPHN (Glycosyl transferase family 1 n=1 Tax=Sphingomonas hengshuiensis TaxID=1609977 RepID=A0A7U4J927_9SPHN)

HSP 1 Score: 130 bits (326), Expect = 4.490e-31
Identity = 85/222 (38.29%), Postives = 115/222 (51.80%), Query Frame = 2
Query:   35 GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMG-IMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGD-HLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVY 694
            G  T +G+W RGVD   F+P RRS   RR LG+  ++ A  +LGR+V EK   ++                A V A  +   +  RV+   VG G A     +   G    G++ GE+LAR VAS DV+  PS  ETFG VTLEAM+CG+  V  R  G   L++D VNGF VP  E  GY   + RL +E E  +   A+G   A+GY    + + +LE Y
Sbjct:  171 GVTTPIGIWSRGVDHAAFNPQRRSLEWRRDLGIADDEFAVGFLGRLVLEKGLDIF----------------AGVVAALEARGVKHRVL--VVGDGPARDWFAERVPGAAFAGFQRGEDLARAVASMDVLFNPSVTETFGNVTLEAMACGVPVVAARATGAVDLIEDGVNGFLVPPREIAGYTDAIARLAQEPELAASAGASGHAKALGYEWDRINQAVLEAY 374          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A6A8Q6T1_9BACT (Glycosyltransferase family 1 protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q6T1_9BACT)

HSP 1 Score: 126 bits (316), Expect = 1.440e-29
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 2
Query:   11 MRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMGIMQGA-EGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGDH-LVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDK 709
            M  ++ R G+     +W RGV+ D FSPA+R +  RR +G   +DI   ++ R+V EK+   ++++V +V                   A  P+V  + VG+G A   +Q         G+  GE+LAR  AS D+ + PS  ETFG VTLEAMSCGL C+V    G   LV+  VNG       K  +   L  +V + E R +M AA RQ A+ Y   E+   ++E YR   K
Sbjct:  167 MIEELKRHGFNDHAHIWARGVETDHFSPAKRDEGWRRSVGFEEDDIVVTFVSRLVWEKELDTYMQSVQRVA------------------AKNPKVKPLVVGSGPAKEELQKLMPEAVYTGFLGGEDLARAYASSDIFLFPSHTETFGNVTLEAMSCGLPCLVADAVGSKSLVEHGVNGLLGEAENKADFTKKLGVIVSDAELRKQMGAASRQKALQYEWNEINGALVENYRQALK 383          
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Match: A0A5C6UD41_9SPHN (Glycosyltransferase family 1 protein n=1 Tax=Sphingomonas ginsenosidivorax TaxID=862135 RepID=A0A5C6UD41_9SPHN)

HSP 1 Score: 124 bits (311), Expect = 6.700e-29
Identity = 84/227 (37.00%), Postives = 116/227 (51.10%), Query Frame = 2
Query:   23 ISRE-GWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALWLGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCVGTGEAMG-IMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTLEAMSCGLACVVNRECGD-HLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKETRSKMSAAGRQMAMGYSTTEVYEGMLEVY 694
            I RE G  T +G+W RGV+ + F+PARR    RR LG+G +++A  +LGR+V EK   V+   V  ++                +  +P RV+   +G G A     +   G    G+++G+ L R VAS DV   PS  ETFG VTLEAM+ G+  V  R  G   L+ D V GF VP  E  GY   + R+V E   R+ M  AG   A GY    + E +L+ Y
Sbjct:  166 IVREWGVTTPVGIWSRGVNHERFTPARRDLDWRRGLGIGDDEVAVGFLGRLVKEKGLDVFANVVRTLR----------------DRGVPHRVL--VIGEGPARDWFAEQVPGAVFAGFQSGDALGRAVASMDVFFNPSVTETFGNVTLEAMAAGVPVVAARASGAIGLIDDGVTGFLVPPTEIGGYADAIARIVTEPGLRTSMGQAGHAKAAGYRWDTINESVLDAY 374          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60047.13539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS6_9PHAE2.590e-15870.42GT4 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2UTT6_9STRA8.820e-4434.26Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S2S5M5_9STRA6.890e-4237.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HC69_9STRA1.670e-4136.99Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1TND5_9STRA5.660e-3432.61Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
W7U5T4_9STRA2.020e-3230.00Glycosyl group 1 n=1 Tax=Nannochloropsis gaditana ... [more]
A0A4D9DCA1_9STRA2.570e-3231.02Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7U4J927_9SPHN4.490e-3138.29Glycosyl transferase family 1 n=1 Tax=Sphingomonas... [more]
A0A6A8Q6T1_9BACT1.440e-2934.89Glycosyltransferase family 1 protein n=1 Tax=Balne... [more]
A0A5C6UD41_9SPHN6.700e-2937.00Glycosyltransferase family 1 protein n=1 Tax=Sphin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60047contigH-elongata_contig60047:135..3290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score424.9
Seed ortholog evalue3.5e-116
Seed eggNOG ortholog2880.D8LSZ6
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGsCOG0438@1,KOG1111@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size997
Cds size987
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60047.13539.1prot_H-elongata_contig60047.13539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60047 145..3290 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.6589992-UTR-H-elongata_contig60047:134..1441622930973.6589992-UTR-H-elongata_contig60047:134..144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60047 135..144 +
1691679646.9442894-UTR-H-elongata_contig60047:134..1441691679646.9442894-UTR-H-elongata_contig60047:134..144Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60047 135..144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.683145-CDS-H-elongata_contig60047:144..3391622930973.683145-CDS-H-elongata_contig60047:144..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 145..339 +
1691679646.9548266-CDS-H-elongata_contig60047:144..3391691679646.9548266-CDS-H-elongata_contig60047:144..339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 145..339 +
1622930973.6993222-CDS-H-elongata_contig60047:504..7321622930973.6993222-CDS-H-elongata_contig60047:504..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 505..732 +
1691679646.9630868-CDS-H-elongata_contig60047:504..7321691679646.9630868-CDS-H-elongata_contig60047:504..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 505..732 +
1622930973.718686-CDS-H-elongata_contig60047:1189..12791622930973.718686-CDS-H-elongata_contig60047:1189..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 1190..1279 +
1691679646.9708195-CDS-H-elongata_contig60047:1189..12791691679646.9708195-CDS-H-elongata_contig60047:1189..1279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 1190..1279 +
1622930973.7353995-CDS-H-elongata_contig60047:1692..17881622930973.7353995-CDS-H-elongata_contig60047:1692..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 1693..1788 +
1691679646.9784243-CDS-H-elongata_contig60047:1692..17881691679646.9784243-CDS-H-elongata_contig60047:1692..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 1693..1788 +
1622930973.802966-CDS-H-elongata_contig60047:2278..23551622930973.802966-CDS-H-elongata_contig60047:2278..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 2279..2355 +
1691679646.9860933-CDS-H-elongata_contig60047:2278..23551691679646.9860933-CDS-H-elongata_contig60047:2278..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 2279..2355 +
1622930973.817822-CDS-H-elongata_contig60047:2737..28251622930973.817822-CDS-H-elongata_contig60047:2737..2825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 2738..2825 +
1691679646.993866-CDS-H-elongata_contig60047:2737..28251691679646.993866-CDS-H-elongata_contig60047:2737..2825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 2738..2825 +
1622930973.834466-CDS-H-elongata_contig60047:3077..32901622930973.834466-CDS-H-elongata_contig60047:3077..3290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 3078..3290 +
1691679647.0013165-CDS-H-elongata_contig60047:3077..32901691679647.0013165-CDS-H-elongata_contig60047:3077..3290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60047 3078..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60047.13539.1

>prot_H-elongata_contig60047.13539.1 ID=prot_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=329bp
MRRKISREGWETQLGVWGRGVDPDLFSPARRSQHLRRQLGLGPNDIAALW
LGRVVHEKQPAVWLRAVHKVQREAQERYDAAVAAGGDEEALPPRVVGVCV
GTGEAMGIMQGAEGVTCLGWKAGEELARVVASCDVMVAPSEIETFGRVTL
EAMSCGLACVVNRECGDHLVKDTVNGFCVPCGEKDGYVTGLRRLVEEKET
RSKMSAAGRQMAMGYSTTEVYEGMLEVYRTCDKQQTREFRDDQLKKRGWP
LWEIFGLLLFYIFEGIKMIAALIALVTEGSDSEVVRLSIKAFRQHLTLLG
ALLGLNSPAPTSSTYSSSLAASIFPSVGS
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mRNA from alignment at H-elongata_contig60047:135..3290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60047.13539.1 ID=mRNA_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3156bp|location=Sequence derived from alignment at H-elongata_contig60047:135..3290+ (Himanthalia elongata Himel1 dioecious)
GACGGAGTTCATGCGGCGAAAGATATCACGCGAGGGATGGGAAACGCAGC TGGGCGTGTGGGGGCGGGGCGTCGACCCCGACCTTTTCTCCCCGGCAAGG CGTTCCCAACACCTTCGCCGCCAGCTGGGCCTAGGTCCCAACGACATCGC TGCGCTTTGGCTGGGAAGAGTGGTACACGAGAAGCAGCCCGCGGTGTGGC TCCGAGTGAGTGGCAATCCGCCGATGAAGAAGCATGGCAGATTTTGTCCA AAAAAATATTTGGAAAGCAGTTGCGCAGGTTTACCGTGTAGGAATCGTGT GTCGTCATTCCTTACGCCCAAACTTGCTCTAATTGTTTTCACCTTCGCCG CTGCTCCCGGGGGTACACAGGCGGTCCACAAGGTCCAGCGCGAGGCACAA GAGCGTTACGACGCCGCCGTCGCCGCGGGGGGAGACGAAGAGGCGTTGCC GCCCAGGGTGGTCGGGGTGTGCGTGGGCACGGGGGAGGCGATGGGGATCA TGCAGGGGGCAGAAGGTGTTACTTGCCTGGGGTGGAAGGCGGGAGAGGAG CTAGCGCGGGTGGTGGCATCGTGTGACGTCATGGTGGCCCCCAGCGAGGT GCGGGGCGGTTGCAGATAAAACATCCTCTGTCTTTACCTTTTTTGTACGC TTTGATCACGATCGATCGCTCGGGATTTCGAAGTTGCGTCTCGCGTGCAG CAAGGAAGGGTGTATGTGACTCTCTTCTGGTGTCCCCATCGAAGCGGTAC ACACCCACATTCAAAAACAAATACTGTAGTAACAAACATCCCCTCGAGCG TTCCTTCCCGTCCCCGTCCCCGCTGTAGCCTGCTCGAAAAATAACGATGT CGAAGATTACCATATTGTGTTGCGAAGTACGGGTGCGGAACTGCGCCTTG CCCGTGAGGCTTTTCCGTTGCACCGTGGTAGCTTTGCCTCCATCGTGTTC GTTTTGGTACTTCTTGAGGTGTCGGGGTAACTAACCGTAAGACCCTTGTT GCTTTTGGGGGGGGGTGGTGGCGTTGGCGGCGTGCCCTTGCGTTCGCTTG AGCAGATCGAGACGTTTGGTCGGGTAACTCTGGAGGCGATGTCTTGCGGC TTGGCATGCGTCGTCAATCGGGAATGCGGAGACCACCTCGTGAAGGTATA TACATGAATCTACATGTATATTTATATTATTTATTTTTTTAACTCCCTCT CTTTTCTTTTGTGTGTGTAAAGAACAATTTTATCTTGGTCGACCTTGGAG CCATGTTTATCGTCTTGTTATATATATATATATATTTATTTTTTTTCCCA AAAGCTTGTGTCCGTCCATTTTTTTACCGTTTCCTGTTTTTTGTTTTGTT TTGTTTTCTCGACGAAGCCAAAAACGGAAGAAGCTTGACGTCGAAAATTT TACCAACTGCCAAAAGCGCCAAAATTCACCTCTTCCCCGATGGGTCTCGA TCTCAGTCACCCCTCTACCTCCTCCACCCTCCGGCAAACGTTGTGTGTTG TGTGTTGTATTATACTTTACGTCCTTTTTTTTTTCTCTTCCGTTTCCCCT CCCCACAGGACACTGTAAACGGCTTCTGTGTGCCATGTGGGGAAAAGGAC GGATACGTGACGGGACTGAGGAGACTCGTAGAAGAAAAGGAAACGCGCAG CAAGGTAACCAACTATACTAACTCCCTATATGCAGCACAGTGTACGCTAT AGTTTAGTATAGTATGGTATGGTATACAGTGGACCTGACTGCCTATTTTA TTCCATAGATGGTTTTAAATAGCGTCGACTCAGTTTTGACTTCTATAGTG TGTGTGTGTGTGTGTGTGTGTGATTTGACTAAAATGTGTGATTTTCCCTG TTCCCTTGTTGAAAGGAAGGTGAGAGCTTTTTGCTCGAGCCGCGGTTTGT GTTTGATTGTGTTGTGTTGTGCCATCGCCATCTACAAGAAGATATTTCTA TTGAATTAATAGGGGTTTTTTTATAAAAAACAAATAGAAATGTTTTTTTT TTAATATCTTTAGAGTACATGCCCCAACCTCTCAGTCGGTGTGTCTAGAC CTAGACATGATCACCGAACCGGGCGATTTGACTCCCCGTTTCTTATTTCC TTTTTGTGGTGGCGTGCGGTGCCTTCGGCGTGTGGGCGGTACAGATGAGC GCGGCGGGGCGGCAGATGGCCATGGGGTACAGCACAACAGAGGTGTACGA GGGTATGCTCGAGGTCTACAGGTGCGGAAGCATCACAGACTTTCTTTGAA TCTCTTTATGGAACTTGATCTGTTTTTCTATACTAAATTCAATATAAAAA TTGAAATTCAGTTCCAGAAGGGTTAAAACCGCATGTATAACATATACATC AATATCGTTTTATTCTTCGTTGGAGTATTTCACCCCACATTGTGGTACAT TGTGGTTGCTCCGTTACAGTTCCCCACTATAGCTAGCCATGGTACAGGAT CGTATGGTTGTGTCTTTTTTTGGAGCATCATGTGGGGACTTGCTTCACGG TGTCAGGTGCAACGGTCGGGTCGGGTCGCCGGTGGGGGGGTGGGTGCATG AAGCTGACAACACCCTACCTCGCCCTCCCCTCGCCTCGTCTCTTCTCCCC CAGAACATGTGACAAACAGCAGACCAGAGAGTTTAGAGACGATCAGCTGA AGAAGCGAGGGTGGCCGTTGTGGGAAATATTCGGGCTCTTGGTGAGAGTT TGAACGGACGCAGGCAGCAACTGGTCATCGCGCTCGAATTCTTAAAAGAG CTCGCGCACGAGCCAAGGGTTTATCGCCGTAGTTTTTTTGTTTTTTCTCA TTACGGTGCCTTAAAAAGAGTTCGTTTCAACGCGAGCAAGCGCGCACGCG TTAAATTAATTAAATACCCGCGCTTCACCTCTGCCGCCGACAGAACCAAA CCGAACCTAACCATCTTCCTCACTCAACTTCCCACTCCCTCAGCTCTTCT ACATTTTCGAGGGAATCAAGATGATCGCGGCGTTGATCGCGCTCGTGACG GAGGGAAGCGACTCGGAGGTGGTGCGACTGTCGATCAAGGCCTTCCGCCA GCACCTGACTCTTCTTGGGGCGCTTTTGGGGCTCAACTCCCCCGCACCCA CGTCCTCGACCTACTCGAGCAGTCTCGCCGCGTCCATCTTTCCCAGTGTC GGTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig60047:135..3290+

>mRNA_H-elongata_contig60047.13539.1 ID=mRNA_H-elongata_contig60047.13539.1|Name=mRNA_H-elongata_contig60047.13539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1974bp|location=Sequence derived from alignment at H-elongata_contig60047:135..3290+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCGAAAGATATCACGCGAGGGATGGGAAACGCAGCTGGGCGTGTG
GGGGCGGGGCGTCGACCCCGACCTTTTCTCCCCGGCAAGGCGTTCCCAAC
ACCTTCGCCGCCAGCTGGGCCTAGGTCCCAACGACATCGCTGCGCTTTGG
CTGGGAAGAGTGGTACACGAGAAGCAGCCCGCGGTGTGGCTCCGAATGCG
GCGAAAGATATCACGCGAGGGATGGGAAACGCAGCTGGGCGTGTGGGGGC
GGGGCGTCGACCCCGACCTTTTCTCCCCGGCAAGGCGTTCCCAACACCTT
CGCCGCCAGCTGGGCCTAGGTCCCAACGACATCGCTGCGCTTTGGCTGGG
AAGAGTGGTACACGAGAAGCAGCCCGCGGTGTGGCTCCGAGCGGTCCACA
AGGTCCAGCGCGAGGCACAAGAGCGTTACGACGCCGCCGTCGCCGCGGGG
GGAGACGAAGAGGCGTTGCCGCCCAGGGTGGTCGGGGTGTGCGTGGGCAC
GGGGGAGGCGATGGGGATCATGCAGGGGGCAGAAGGTGTTACTTGCCTGG
GGTGGAAGGCGGGAGAGGAGCTAGCGCGGGTGGTGGCATCGTGTGACGTC
ATGGTGGCCCCCAGCGAGGCGGTCCACAAGGTCCAGCGCGAGGCACAAGA
GCGTTACGACGCCGCCGTCGCCGCGGGGGGAGACGAAGAGGCGTTGCCGC
CCAGGGTGGTCGGGGTGTGCGTGGGCACGGGGGAGGCGATGGGGATCATG
CAGGGGGCAGAAGGTGTTACTTGCCTGGGGTGGAAGGCGGGAGAGGAGCT
AGCGCGGGTGGTGGCATCGTGTGACGTCATGGTGGCCCCCAGCGAGATCG
AGACGTTTGGTCGGGTAACTCTGGAGGCGATGTCTTGCGGCTTGGCATGC
GTCGTCAATCGGGAATGCGGAGACCACCTCGTGAAGATCGAGACGTTTGG
TCGGGTAACTCTGGAGGCGATGTCTTGCGGCTTGGCATGCGTCGTCAATC
GGGAATGCGGAGACCACCTCGTGAAGGACACTGTAAACGGCTTCTGTGTG
CCATGTGGGGAAAAGGACGGATACGTGACGGGACTGAGGAGACTCGTAGA
AGAAAAGGAAACGCGCAGCAAGGACACTGTAAACGGCTTCTGTGTGCCAT
GTGGGGAAAAGGACGGATACGTGACGGGACTGAGGAGACTCGTAGAAGAA
AAGGAAACGCGCAGCAAGATGAGCGCGGCGGGGCGGCAGATGGCCATGGG
GTACAGCACAACAGAGGTGTACGAGGGTATGCTCGAGGTCTACAGATGAG
CGCGGCGGGGCGGCAGATGGCCATGGGGTACAGCACAACAGAGGTGTACG
AGGGTATGCTCGAGGTCTACAGAACATGTGACAAACAGCAGACCAGAGAG
TTTAGAGACGATCAGCTGAAGAAGCGAGGGTGGCCGTTGTGGGAAATATT
CGGGCTCTTGAACATGTGACAAACAGCAGACCAGAGAGTTTAGAGACGAT
CAGCTGAAGAAGCGAGGGTGGCCGTTGTGGGAAATATTCGGGCTCTTGCT
CTTCTACATTTTCGAGGGAATCAAGATGATCGCGGCGTTGATCGCGCTCG
TGACGGAGGGAAGCGACTCGGAGGTGGTGCGACTGTCGATCAAGGCCTTC
CGCCAGCACCTGACTCTTCTTGGGGCGCTTTTGGGGCTCAACTCCCCCGC
ACCCACGTCCTCGACCTACTCGAGCAGTCTCGCCGCGTCCATCTTTCCCA
GTGTCGGTTCCCTCTTCTACATTTTCGAGGGAATCAAGATGATCGCGGCG
TTGATCGCGCTCGTGACGGAGGGAAGCGACTCGGAGGTGGTGCGACTGTC
GATCAAGGCCTTCCGCCAGCACCTGACTCTTCTTGGGGCGCTTTTGGGGC
TCAACTCCCCCGCACCCACGTCCTCGACCTACTCGAGCAGTCTCGCCGCG
TCCATCTTTCCCAGTGTCGGTTCC
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