mRNA_H-elongata_contig60031.13538.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60031.13538.1
Unique NamemRNA_H-elongata_contig60031.13538.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Match: A0A6H5KKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY4_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 1.260e-92
Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 2 
Query:  212 AHMAWNPSGTHLAIGHTGANLVNDWAATIIGHDRGSKG-MKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDGQVVIWTRVLDASSDLHKVAVLHSKHSSAVRSACCPSISPTVVSGGADGRLVSFSIETASVEWEETLMVSNTYHPSVNELLEFPDNPCCLLVSAVDTARSHSMFT 742
            AHMAWNPSGTHLAIGH+G+ LVN+WAATII  D  SK  MKLRS++H KPAQAVAWVTPSKN QDHLVTGGEDG VVIWTRVLDA SDLHKVA+LHS+H+SAVRSACCPSISPTVV+GGADGRLVS+SIETASV+WEE L VS TYHP VNELLEFPDNP  LLVS VDTA+SHS+FT
Sbjct:  679 AHMAWNPSGTHLAIGHSGSTLVNNWAATIIAKDGRSKSDMKLRSDRHNKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVAILHSRHTSAVRSACCPSISPTVVTGGADGRLVSYSIETASVQWEELLRVSKTYHPMVNELLEFPDNPHSLLVSTVDTAKSHSLFT 856
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BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Match: D8LT10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT10_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.730e-41
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 2 
Query:  212 AHMAWNPSGTHLAIGHTGANLVNDWAATIIGHD-RGSKGMKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDGQVVIWTRVLDASSDLHKVA 487
            AHMAWNPSGTHLAIGH+G+ LVN+WAATII  D R    MKLRS++H KPAQAVAWVTPSKN QDHLVTGGEDG VVIWTRVLDA SDLHKVA
Sbjct:  520 AHMAWNPSGTHLAIGHSGSTLVNNWAATIIAKDGRRKSDMKLRSDRHHKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVA 612
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY4_9PHAE1.260e-9282.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT10_ECTSI2.730e-4181.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60031contigH-elongata_contig60031:351..3244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog4792.ETI51042
EggNOG free text desc.WD40 repeats
EggNOG OGs3Q9PM@4776,KOG0265@1,KOG0265@2759
COG Functional cat.A
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-08_004400.1
Exons4
Model size745
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60031.13538.1prot_H-elongata_contig60031.13538.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60031 481..3244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5253034-UTR-H-elongata_contig60031:350..4801622930973.5253034-UTR-H-elongata_contig60031:350..480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60031 351..480 +
1691679646.8860369-UTR-H-elongata_contig60031:350..4801691679646.8860369-UTR-H-elongata_contig60031:350..480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60031 351..480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.5583947-CDS-H-elongata_contig60031:480..7041622930973.5583947-CDS-H-elongata_contig60031:480..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 481..704 +
1691679646.89612-CDS-H-elongata_contig60031:480..7041691679646.89612-CDS-H-elongata_contig60031:480..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 481..704 +
1622930973.5814435-CDS-H-elongata_contig60031:1498..16311622930973.5814435-CDS-H-elongata_contig60031:1498..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 1499..1631 +
1691679646.9144332-CDS-H-elongata_contig60031:1498..16311691679646.9144332-CDS-H-elongata_contig60031:1498..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 1499..1631 +
1622930973.5974061-CDS-H-elongata_contig60031:2481..26491622930973.5974061-CDS-H-elongata_contig60031:2481..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 2482..2649 +
1691679646.9276304-CDS-H-elongata_contig60031:2481..26491691679646.9276304-CDS-H-elongata_contig60031:2481..2649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 2482..2649 +
1622930973.6167984-CDS-H-elongata_contig60031:3154..32441622930973.6167984-CDS-H-elongata_contig60031:3154..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 3155..3244 +
1691679646.935266-CDS-H-elongata_contig60031:3154..32441691679646.935266-CDS-H-elongata_contig60031:3154..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60031 3155..3244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60031.13538.1

>prot_H-elongata_contig60031.13538.1 ID=prot_H-elongata_contig60031.13538.1|Name=mRNA_H-elongata_contig60031.13538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MMDDAHTKLRLDGVGSGWRCSLFRENQAHMAWNPSGTHLAIGHTGANLVN
DWAATIIGHDRGSKGMKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDG
QVVIWTRVLDASSDLHKVAVLHSKHSSAVRSACCPSISPTVVSGGADGRL
VSFSIETASVEWEETLMVSNTYHPSVNELLEFPDNPCCLLVSAVDTARSH
SMFT*
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mRNA from alignment at H-elongata_contig60031:351..3244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60031.13538.1 ID=mRNA_H-elongata_contig60031.13538.1|Name=mRNA_H-elongata_contig60031.13538.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2894bp|location=Sequence derived from alignment at H-elongata_contig60031:351..3244+ (Himanthalia elongata Himel1 dioecious)
ATATAGAGGCTTTTTTCCTCCCGGGAGACGCGTGATGTTTTCACCACCAG
CACCACCAGACGTTCAAGAGCCATCAAGGATGACTTACAGAGTTGTAGCC
TAACTTTCTACTCACAAACTGGGATGATGGATGATGGATGATGCACACAC
CAAATTACGGCTTGATGGGGTCGGGTCGGGTTGGCGTTGCTCGCTTTTTC
GGGAAAATCAGGCGCACATGGCGTGGAACCCTTCCGGAACCCATCTCGCC
ATCGGACACACGGGGGCCAACCTGGTGAACGACTGGGCGGCGACTATCAT
CGGACACGACCGCGGCTCCAAGGGCATGAAGCTGCGCTCCAACAAGCACA
CCAAGTGAGAGGGAGGTGTGGGTGGGGGGTGCTACTCTACTCTACTCTAC
TGTACTCTACTATACTGTACTGTATATCATCTCGCCTTTGAAAATCGAAA
GAAAAATCACCCAAATCAATGATTTTCTTTCACGTTTCGGAAAGGATGGA
AAGTGTATAGTAATAGTGAGTTGCTTTGTTTCTCCCGCCGCTTGCCATTA
ATAATTAATAGTCATTTTCATCTCTTCTCTGACTATAGGGGGGGGCGGTG
GATCTTCGGGAAGATTTCGCCCGTGAACCCTCCAAACCCCTTTTACCCCT
TTACCCGCTGATATCGGCTGTTGGTATTGGGTTACCGTCGGTATTGAGTT
AAATGGTCGAAGGCTGTTCCACCTGGGTAGTATTGTCTATACATTGTTGT
GAAGGGAGTGTATGCTATATGTGATGGCCACAGGGTTGCGGAGGGAGTGG
CCACATTATTCCTTATGCTATATGTGATAACCGCAGTATGCTATATGCTA
TATACAATGACCAAAATATTCTAAATGTAAGTGTAATGACCACAGTATAT
GTTATCATATTGCGGCTGTTGATGCGGCTGTTGATGCTGCTGTTGATGCT
GCTGTTGGTGACTTGCCTATGCGAGGAATCGAAATTGACGGACAGCTCAA
ACCTACAGACACCGTAGGCACATACTTCGAACCAGGACTGCCGCTCGTTG
ACCTTCTCTGTCTGTGTCTCATACATTTCGGTATATTTTATATTATATTA
GATACATATATACATACATACATAGCGTTCACGCGTGTCCCAAACCAGGC
CGGCTCAGGCCGTAGCATGGGTGACGCCGTCAAAGAATAAACAGGATCAT
CTGGTGACGGGGGGCGAGGACGGACAGGTCGTCATCTGGACCAGGGTACT
CGATGCCTCGTCGGATCTCCACAAAGTGGCGGTGAGGGGAAGAAGGGAGT
AGGTTGTGGACTCGTCCGTGATGTGGTGTTGGCCGCCGTCGAGGGAGAAT
AATAGGTGTTCGCCGAAAGAGCGCGAGCTGCCAACTCCGTGGCCCCAGCC
GAGGTGCTGCCATGTGTTGTAGCGATAGCTTTCGCGTTGCTGGATGCGTC
TTGCTTGTCTCGGAATGCCGCAATGCACAACATGCAATATACGATAGACC
ACGGCGTTACAAAAGGCAGGAGGCGTGTTTTACGAGATGGGCGCGCGCGC
TCAAAGGCACTCAACGGAACACGAAAGCGAGTTGACCCTCCCTAAAGAGT
ACAAGGTCATTGCTATCATTTGACCTATTATAACTGTATATTATAACTGT
CGTGTGCCCCCATATATACTATACTATACTATACTGTACTATACTATACT
ATACTATACTGTACTATTGCCATTCTCGTCTAACGTCTAATACACTACAA
CACTAGTACACTAACGTATGGGAATGTGTGTATGTGTATATTTGTGTCGT
CAAAGTAGGCCATTGTAGCGTTCTGTGATTTTCAAAATAAAGACAAGGCA
AGGGAAGGAAAAACAGATGCGCCGCATGGTGTGAAATCGTCTGGCCTTGC
CTGGTCGGTTGTGATATGCGCTTGCTCGTTCGTTTACCGCCGTCACTGAC
GTCACTGCCCCCCCTTGGAGAAGGATGTCGCCAACACTGCATTGACCACA
CCGTCGACACCGTCGCGAATCCCTCAAAACCGCCCTTCGGTCTTCGGTTA
TATTTTTGTCCCCCCAATAATCAATCATCAATAATCATCGTCACTTCTTT
GTCCCCCCTCCCCCCCAAACACTCCCTGCAGGTGCTGCACAGTAAGCACA
GCTCGGCGGTACGAAGCGCTTGCTGTCCGTCTATCTCGCCCACGGTGGTT
AGCGGCGGCGCCGACGGGAGGCTGGTAAGCTTCAGCATCGAGACCGCGTC
CGTCGAATGGGAGGAGACCTTGATGGTTAGCAACACCTATCATCCCTCGG
TGAGTGGAAGTAAAAACAAGCAATTTGGTGTTAATTTCCTTGTGGTTTTC
AGCAGCTTCTCTTTTCTCTTGCTTTTTACTTCATTTTGTGGTGGAATCGT
AATATTATTAGTAATATCGTAATATCGTAAAATGAAAACGGAATTGTAGT
ATGCGGTGATAGGATGTGTGTTGATGTGTTGATGCCGGACGACGCGTGTG
CGTGTTTGTGTATTGATGATGAATTTCTCAAGAGCGTGCCTCTTTCCCCC
CAGATATTTTGATGGTGCCGACCGACCGACCAACCGGAATACCGGGATCC
AAATGCGCCAGTGCATATTTTCCATCAGAACCATTGCCCTCATCATCTCA
GAACCATTGCCCTCCTCATCTCAACAGGAATGTAGAGAGAAGGAGAAAAA
AGAGTGACTCTAATCACCACGCGATTTCGTCCGAAACGCCGAGCTCGAAT
CCGAACACGTCTGTGATGTCTTCCGTCCTTCCCTGTGATGTTTGAATGCT
CCAGGTAAACGAGTTGTTGGAGTTCCCAGACAATCCATGCTGCCTGCTGG
TGAGCGCCGTGGACACGGCGCGGAGCCACTCCATGTTTACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig60031:351..3244+

>mRNA_H-elongata_contig60031.13538.1 ID=mRNA_H-elongata_contig60031.13538.1|Name=mRNA_H-elongata_contig60031.13538.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig60031:351..3244+ (Himanthalia elongata Himel1 dioecious)
ATGATGGATGATGCACACACCAAATTACGGCTTGATGGGGTCGGGTCGGG
TTGGCGTTGCTCGCTTTTTCGGGAAAATCAGGCGCACATGGCGTGGAACC
CTTCCGGAACCCATCTCGCCATCGGACACACGGGGGCCAACCTGGTGAAC
GACTGGGCGGCGACTATCATCGGACACGACCGCGGCTCCAAGGGCATGAA
GCTGCGCTCCAACAAGCACACCAAATGATGGATGATGCACACACCAAATT
ACGGCTTGATGGGGTCGGGTCGGGTTGGCGTTGCTCGCTTTTTCGGGAAA
ATCAGGCGCACATGGCGTGGAACCCTTCCGGAACCCATCTCGCCATCGGA
CACACGGGGGCCAACCTGGTGAACGACTGGGCGGCGACTATCATCGGACA
CGACCGCGGCTCCAAGGGCATGAAGCTGCGCTCCAACAAGCACACCAAGC
CGGCTCAGGCCGTAGCATGGGTGACGCCGTCAAAGAATAAACAGGATCAT
CTGGTGACGGGGGGCGAGGACGGACAGGTCGTCATCTGGACCAGGGTACT
CGATGCCTCGTCGGATCTCCACAAAGTGGCGGCCGGCTCAGGCCGTAGCA
TGGGTGACGCCGTCAAAGAATAAACAGGATCATCTGGTGACGGGGGGCGA
GGACGGACAGGTCGTCATCTGGACCAGGGTACTCGATGCCTCGTCGGATC
TCCACAAAGTGGCGGTGCTGCACAGTAAGCACAGCTCGGCGGTACGAAGC
GCTTGCTGTCCGTCTATCTCGCCCACGGTGGTTAGCGGCGGCGCCGACGG
GAGGCTGGTAAGCTTCAGCATCGAGACCGCGTCCGTCGAATGGGAGGAGA
CCTTGATGGTTAGCAACACCTATCATCCCTCGGTGCTGCACAGTAAGCAC
AGCTCGGCGGTACGAAGCGCTTGCTGTCCGTCTATCTCGCCCACGGTGGT
TAGCGGCGGCGCCGACGGGAGGCTGGTAAGCTTCAGCATCGAGACCGCGT
CCGTCGAATGGGAGGAGACCTTGATGGTTAGCAACACCTATCATCCCTCG
GTAAACGAGTTGTTGGAGTTCCCAGACAATCCATGCTGCCTGCTGGTGAG
CGCCGTGGACACGGCGCGGAGCCACTCCATGTTTACGTGAGTAAACGAGT
TGTTGGAGTTCCCAGACAATCCATGCTGCCTGCTGGTGAGCGCCGTGGAC
ACGGCGCGGAGCCACTCCATGTTTACGTGA
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