mRNA_H-elongata_contig6.13532.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI) HSP 1 Score: 427 bits (1099), Expect = 1.340e-142 Identity = 232/348 (66.67%), Postives = 269/348 (77.30%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDK-LLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQ--RHSDGEAVKVQGAEDGQ-----AGALARDAISRR------------SMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHAWVEERARG 986
RIMLE SEV+R E+G L ATL AADSRT HVR VLKV +GE VRVGVV+ G +DDA+I+W EP PE PP DIPG +K RK W DLVL LG SD+ LL+ VP E+RPKVALMLA+PRPLQLERILP+V+SLGV T+VLC+A KV K YFGSH FRDP S+REKL+EGLSQSGDTV+P+V+VARRLK+FLEDDLDR FP++RWVR +AHPTRL AQ R + GEA A G+ AG +A A S R + +RFS+IEPP+GCDP+DVGVLV +GPEGGWVEP+EL LLQSFGFQAVTLG+RVLRSDVAV ALLALAHAWV+ERA G
Sbjct: 87 RIMLEPSEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGESVRVGVVNAGRMDDASIAWEEPTDPPEGAPPPDIPGRQKGRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDRCFPRDRWVRALAHPTRLPAQVSRCAGGEATAAATAAGGEGVGVEAGVVAATAQSGRVDGVESDGAATAPVPALRFSQIEPPKGCDPADVGVLVAVGPEGGWVEPDELQLLQSFGFQAVTLGSRVLRSDVAVNALLALAHAWVDERAAG 434
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A6H5KW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW92_9PHAE) HSP 1 Score: 329 bits (843), Expect = 4.110e-105 Identity = 195/366 (53.28%), Postives = 238/366 (65.03%), Query Frame = 3
Query: 9 MLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDK-LLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTV-------------------LPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQ--RHSDGEAVKVQGAEDGQAGALARDAISRRSMCG-----------------VRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSF-GFQAVTLGARVLRSDVAVCALLALAHAWVEERARG 986
MLE +EV+R E+G L ATL AADSRT HVR VLKV +GEPVRVGVV+ G +DDA+I+W +P PE TPP D+PG +K RK W DLVL LG SD+ LL+ VP E+RPKVALMLA+PRPL+LERILP+V+SLGV T+VLC+A KV K YFGSH FRDP S+R KL+EGLSQ D V LP+VIVARRL +FLEDDLDR FP++RWVR +AHPTRL AQ R + GEA G+ + ++ + G +RFS+IEPP+G G+ + W E+ +F +AVTLG+RVLRSDVAV ALLALAHAWV+ERA G
Sbjct: 1 MLEPAEVVRDEEGNLSATLPAADSRTAHVRGVLKVENGEPVRVGVVNAGRMDDASITWEDPTDPPEGTPPPDVPGRQKDRKSSPKWMDLVLDLGPSDRQLLKPVPDEQRPKVALMLAVPRPLKLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPLSVRAKLIEGLSQVSDEVRVFRQVKHFDNMENRAAFVLPEVIVARRLNIFLEDDLDRCFPRDRWVRALAHPTRLPAQVARCAGGEATAAATVAGGEGVGVEAGVVAATTQIGRVDGVESDGAATTPAPALRFSQIEPPKG------GIAGSALMHEQWQICFEMSYYATFVKGKAVTLGSRVLRSDVAVNALLALAHAWVDERAAG 360
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A835YRY5_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY5_9STRA) HSP 1 Score: 226 bits (575), Expect = 8.810e-65 Identity = 148/373 (39.68%), Postives = 192/373 (51.47%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDG-GLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPED----------------TPPSDIPGGKK---HRKVVS-----------------NWRD----------LVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHAWVEERA 980
R+M+E EV + G + L D+RT H+RS+LKV D VR GVVD G P+ TP + +P HR W D L L LG + +L +P RP+V L+LA PRPLQLER+LPM+SSLGVD+LVL A+KVEK YFGSHL R P+++R KLVEG +QSG TVLP+ + RRLK+FLED+L+ L+P++ +R +AHPTR + + R S + PPE V++ +GPEGGW EP EL++ ++ GF VTLG RVLRSDVAV ALLALAH WV+ A
Sbjct: 61 RVMIEPEEVQLADGGESCFCVLAHNDTRTEHLRSILKVEDAGTVRTGVVDAGECHATGKHASSPHPQAHGGGAACADTMVHASALCTPTAAVPRSAHAVAHRHXXXXXXXXXXAARSCDASAVTWLDSAAAERSAAPLRLDLG-APAILAPLPPRNRPRVDLLLAAPRPLQLERMLPMISSLGVDSLVLINAAKVEKSYFGSHLMRKPEALRAKLVEGCTQSGSTVLPRTTIKRRLKIFLEDELESLYPRDTCLRVIAHPTRAD------------------------------NTTPAPRLSTLPPPEKATAHTARVVIAVGPEGGWDEPFELEMFEAHGFVPVTLGTRVLRSDVAVNALLALAHDWVDSLA 402
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A1Z5JKH5_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH5_FISSO) HSP 1 Score: 194 bits (494), Expect = 3.500e-54 Identity = 129/326 (39.57%), Postives = 166/326 (50.92%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDGGL-YATLCAADSRTHHVRSVLKVADGEPVRVGVVDRG-----LIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELD-LLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
R +L EV + ED L YA L D RT H +L + +G+ VR G+V L D A + W +P GK + V N D L + L+ Q V+L+LALPRPLQL R+LPM+S +GVD LVL A KV K YFGSHLFR P+ + E+L+EGL QSGDT LP+V V + L F++D LD LFP R +AHP R+ R I M V F P +++ +GPEGGW EPNE++ + GFQ +T+G RVLRSD AV +LL LAH
Sbjct: 20 RFLLSPEEVSQDEDSSLPYAVLGKDDYRTIHAAKILNLRNGDSVRAGLVSSEDHNGFLTDHATVQW--------------LPEGKVKKAEVLNNGDPPGSLHIRLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDELFPLHSHARVIAHPQRVVKDR-----------------------VIESVRMRSVTFPTDSPRR--------MVIAVGPEGGWEEPNEIERFVNQHGFQQITMGTRVLRSDCAVVSLLGLAH 300
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A6V2MGD3_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MGD3_9STRA) HSP 1 Score: 197 bits (502), Expect = 8.680e-54 Identity = 136/325 (41.85%), Postives = 174/325 (53.54%), Query Frame = 3
Query: 54 YATLCAADSRTHHVRSVLKVADGEPVRVGVV---------------DRGLI-DDAAISWREPNKLP--EDTPPSDIPGGKKHRKVVSNWRDLVLKLGT-----SDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
Y TL D RT H +L V +G+ +R G+V + GLI D+A I W K+ E T D PG + R L+ L + SD +P V+L+LALPRPLQL RILPMV+ LGVD LVL A KV K YFGSHLFR P +R L+EGL Q+GD +PKV V RRLK FLEDDLD +FP + + R +AHP R E +GE + + + R + S E + P +++ +GPEGGW E EL++ Q GFQ +TLG RVLRSDVAV +LL+LAH
Sbjct: 142 YVTLPKNDYRTVHAAKILNVHNGDTIRAGIVGEDDLISNDDASSYQNSGLITDEAVIEWLPEGKIKKAEPTKNGDPPG---------SLRVLLHSLTSPYTTPSDDTASSSSSYSQP-VSLILALPRPLQLGRILPMVAQLGVDHLVLTSAQKVPKDYFGSHLFRKPNELRRHLIEGLCQAGDVKIPKVTVVRRLKPFLEDDLDSMFPLDEYARVIAHPQR-EKIVLENGETI------------IPAPPLRMRDVVFPESSNTEQEQHQQPR---IVLAVGPEGGWAEDYELNMFQKCGFQQITLGKRVLRSDVAVVSLLSLAH 440
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A1Z5K163_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K163_FISSO) HSP 1 Score: 190 bits (483), Expect = 2.580e-52 Identity = 126/326 (38.65%), Postives = 166/326 (50.92%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDGGL-YATLCAADSRTHHVRSVLKVADGEPVRVGVVDRG-----LIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELD-LLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
R +L EV R +D L YA L D RT H +L + +G+ VR G+V L D A + W +P GK + V N + L + + L+ Q V+L+LALPRPLQL R+LPM+S +GVD LVL A KV K YFGSHLFR P+ + E+L+EGL QSGDT LPKV + + L FL+ +D LFP + R +AHP R+ R I M V F P + +++ +GPEGGW EPNE+D + F +T+G RVLRSD AV +LL LAH
Sbjct: 42 RFLLSAEEVSRDKDATLPYAILGKDDYRTIHAAKILNLRNGDSVRAGLVSSNDNNGFLTDHATVQW--------------LPEGKIKKAEVLNNGEPPGSLHITLQSLESSTQRFSHSVSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDELFPLHSYARVIAHPQRVVEDR-----------------------VIESVRMRSVSFPTDSPRK--------IVIAVGPEGGWEEPNEIDRFVNEHDFHQITMGTRVLRSDCAVVSLLGLAH 322
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: A0A7S1BIA7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIA7_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.090e-52 Identity = 137/329 (41.64%), Postives = 173/329 (52.58%), Query Frame = 3
Query: 3 RIMLEQSEV-IRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGK--KHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPK-ERW--VRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVG----VLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
R + + SEV GE + T+ D RT H VL V +GE VR G+V GL D+A ++W IP GK K + L+L + + V+L+LA PRPL L RILP+VS +GVD LVLC ASKV K YFGSHLFR + + + LVEGL Q+GD LP+V VARRLK+FLEDDLD +FP ER R +AHPTR + G+ I R VR E+ P +D +L+ +GPEGGW E E+DL + GF+ VTLG R LR+DVAV LL LA
Sbjct: 81 RFLFDPSEVDTSGEFPSV--TIAVDDYRTVHAAKVLGVQNGEVVRAGIVGTGLTDEATVTW--------------IPSGKIKKAEPTQNGGPPGPLRLSLRNMIPASDGGAGPRCVSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLDDIFPPPERGGPTRVIAHPTRSGISKEKGGK-------------------IEMR----VRDVELYAPSPMGSNDSSHHPSILLAVGPEGGWEEEYEIDLFRKHGFEVVTLGQRTLRTDVAVITLLGLAQ 370
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: K0SJH0_THAOC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJH0_THAOC) HSP 1 Score: 189 bits (481), Expect = 1.370e-51 Identity = 138/363 (38.02%), Postives = 187/363 (51.52%), Query Frame = 3
Query: 3 RIMLEQSE--VIRGEDGGLYATLCAA--DSRTHHVRSVLKVADGEPVRVGVV-DR---------GLI-DDAAISWREPNKLPEDTPPS--DIPGGKK----HRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLER-----------------------ILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
RIM + +E V+ + G AT+ D RT H+ L + +G+ VR G V DR GL+ D+A + W K+ + +P + PG K + S W D + P+V+L+LALPRPLQL+R +LPMV+ LGV+ L+L A KV K YFGSHLFR P +R LVEGLSQSGD LP+V V++RLK+FLED+LD LFP+ ++ R +AHP R +D R + R S+I+ D S +L+ +GPEGGW EP ELD+ Q GF+ +TLG RVLR+DVAV +LLALA+
Sbjct: 42 RIMFDATELSVVSDQSKGYLATVTLPKDDYRTRHIAKTLNLQNGDCVRAGCVRDRDPSEFDSLGGLMTDEAFVEWLPEGKIKKASPTRNREPPGSLKVLIPNPPKTSLWEDRY-----------GAETDDTPRVSLLLALPRPLQLQRWGLFIQCENSLEFWSLLTNFRIRLLPMVAQLGVENLILTNARKVPKDYFGSHLFRKPSVLRGLLVEGLSQSGDVRLPRVTVSKRLKIFLEDELDELFPRSQYERIIAHPQR--------------------------KDETGRMT----RMSDIKV-NATDGSPRRILLAVGPEGGWEEPYELDMFQKLGFKRITLGTRVLRTDVAVVSLLALAN 362
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: B7FST2_PHATC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST2_PHATC) HSP 1 Score: 187 bits (475), Expect = 4.070e-51 Identity = 125/325 (38.46%), Postives = 178/325 (54.77%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVD----RGLI-DDAAISWREPNKLPEDTPPSD-IPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVGVLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAH 959
R + + SEV + TL D RT H +L + +G +R G+V +GL+ DDA + W K+ + P + P G H + LQ ++ P V+L+LALPRPLQL R+LPM+S +GV+ LVL +A KV K YFGSHL R+P+ +REKL+EGL Q+GD LP++ + R L+ FL +++D +FPK ++ R +AHP QR SD G+L + ++E P ++V +GPEGGW EP+ELD + GFQ +T+GARVLRSD AV +LL+LAH
Sbjct: 49 RFLFDTSEVKYTDTELPSITLPRDDFRTIHASKILGLRNGNTIRAGLVSCEVHQGLLTDDATVQWIPEGKVKKAEPLGNGNPPGSLHIHLNG---------------LQAPAEQLVPSVSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEIFPKNQYARAIAHP-----QRTSD------------PMGSLKK------------MKQVEFPV----KSSRLVVAVGPEGGWEEPDELDRFRDCGFQQITMGARVLRSDCAVVSLLSLAH 325
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Match: R1F0S1_EMIHU (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F0S1_EMIHU) HSP 1 Score: 183 bits (464), Expect = 6.520e-50 Identity = 132/322 (40.99%), Postives = 179/322 (55.59%), Query Frame = 3
Query: 3 RIMLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLIDDAAISWREPNKLPEDTPPSDIPGGKKHRKVVSNWRDLVLKLGTSDKLLQQVPQERRPKVALMLALPRPLQLERILPMVSSLGVDTLVLCRASKVEKMYFGSHLFRDPQSMREKLVEGLSQSGDTVLPKVIVARRLKVFLEDDLDRLFPKERWVRTVAHPTRLEAQRHSDGEAVKVQGAEDGQAGALARDAISRRSMCGVRFSEIEPPEGCDPSDVG--VLVTIGPEGGWVEPNELDLLQSFGFQAVTLGARVLRSDVAVCALLALAHA 962
R++LE SE G ATL A D RT HVR VL+ DG +R GV+DRG D+A + W +PGG + L L LG +L P ER P++ L+LA+PRPLQ R+LPMV+SLGV T+ + A+K EK +F SHL R+ Q+ +++L L+ GDT +P+V+V RRL+ L D L + R VAHP R + GE AL+ A S+ + I+ EG D + G VL+ +GPEGGW EP EL+LL+ GF+ VTLG+R LR+DVAV +LL++AHA
Sbjct: 32 RLLLEPSECA----GDGTATLPADDPRTQHVRVVLRARDGASIRAGVLDRGSSDEATVCW--------------LPGG------ADDPPGLRLALGEPSRLR---PAER-PRIDLLLAMPRPLQFGRLLPMVASLGVGTVYVTAAAKTEKSFFSSHLLREDQAAQQQLRAALA--GDTAVPRVVVDRRLRSLLRDRLPQYGR-----RLVAHPRREGRDARTVGE-------------ALSGLASSQAA--------IDAGEGQDGAGSGPRVLLAVGPEGGWDEPAELELLREHGFEEVTLGSRTLRTDVAVVSLLSVAHA 297 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6.13532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6.13532.1 >prot_H-elongata_contig6.13532.1 ID=prot_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=341bp MLEQSEVIRGEDGGLYATLCAADSRTHHVRSVLKVADGEPVRVGVVDRGLback to top mRNA from alignment at H-elongata_contig6:39855..43478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6.13532.1 ID=mRNA_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3624bp|location=Sequence derived from alignment at H-elongata_contig6:39855..43478- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6:39855..43478- >mRNA_H-elongata_contig6.13532.1 ID=mRNA_H-elongata_contig6.13532.1|Name=mRNA_H-elongata_contig6.13532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2046bp|location=Sequence derived from alignment at H-elongata_contig6:39855..43478- (Himanthalia elongata Himel1 dioecious)back to top |