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Homology
BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: D7FKT9_ECTSI (Tim44 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT9_ECTSI) HSP 1 Score: 271 bits (692), Expect = 5.150e-86 Identity = 134/212 (63.21%), Postives = 163/212 (76.89%), Query Frame = 2
Query: 11 GEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFYATLKGELKQARKDGGNRYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQKRWRLALLQELGGAPV 646
GEVRSSG IFDPYVYRG GGK LP MM+++G++ R GIMRSH+KSGVCAGIIQKHVP+FH SKFPPVAN++FK+F EAHRKGDT ALAGLTTEE YA+LKGE+K ++ G R AFR++ FK+ T VLQMR RKKH+S +EGWGQ + L SER+++ VDA G EV + ++ N+T+G FE FFGD RWRLAL+QE AP
Sbjct: 19 GEVRSSGGIFDPYVYRGA-GGKGLPPMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDFHVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLVDFKEPTTVLQMRVDRKKHISPKEGWGQVT-CRLCSERQLLVVDAKGNEVEAKADEDATTAQNVTVGVFEAFFGDSAGRWRLALVQEFAEAPA 228
BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: A0A835YW25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW25_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.490e-36 Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 2
Query: 83 PLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFYATLKGEL-KQARKDGGN---RYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQKRWRLALLQELGGAPVHSQRRAVNIT 676
P + T GLK R+ + + H+KS II+KHVP F FPP+A++VF++F++AHRKGD +L L TE + +K ++ + RK G R AF++L + T+VLQ+R +K + GWGQ + + S RE++ VD GREV+P G + +++IT+G E+FF D WRLA+L E+G R V+ T
Sbjct: 5 PPVYTLAGLKHRFTVYKGHMKSSAAIAIIKKHVPGFSPKTFPPIADQVFQSFIDAHRKGDLPSLCNLATEGLHDNVKADVTRMGRKPGSEPKPRAAFKLLRMMEPTYVLQVRAAMEKGSGGKRGWGQMTVQYVTS-REILAVDRRGREVQPPPGGNKV-VESITMGVLEIFFNDPAHTWRLAMLHEVGATGPAEARTNVDKT 204
BLAST of mRNA_H-elongata_contig5993.13527.1 vs. uniprot
Match: A0A6H5K0Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Z7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.800e-17 Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 2
Query: 11 GEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSGVCAGIIQKH 178
GEVRSSG +FDPYVYRG GGK LP MM+++G+K R GIMR H+KSGVCAGIIQ H
Sbjct: 25 GEVRSSGGVFDPYVYRGA-GGKGLPPMMSSEGVKERLGIMRGHLKSGVCAGIIQVH 79
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 271.6 |
| Seed ortholog evalue | 3.5e-70 |
| Seed eggNOG ortholog | 2880.D7FKT9 |
| Preferred name | KRE29 |
| KEGG ko | ko:K09657,ko:K17426 |
| KEGG Reaction | R07610,R07611 |
| KEGG Pathway | ko00513,ko01100,map00513,map01100 |
| GOs | GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234 |
| EggNOG free text desc. | mitochondrial translation |
| EggNOG OGs | KOG4599@1,KOG4599@2759 |
| EC | 2.4.1.244 |
| COG Functional cat. | L |
| CAZy | GT7 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | br01610,ko00000,ko00001,ko01000,ko01003,ko03011 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Tim44-like domain |
| Ec32 ortholog | Ec-17_001350.1 |
| Exons | 5 |
| Model size | 1230 |
| Cds size | 690 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930970.727361-UTR-H-elongata_contig5993:3929..4468 | 1622930970.727361-UTR-H-elongata_contig5993:3929..4468 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig5993 3930..4468 - |
| 1691679645.3541434-UTR-H-elongata_contig5993:3929..4468 | 1691679645.3541434-UTR-H-elongata_contig5993:3929..4468 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig5993 3930..4468 - |
| 1622930970.8459105-UTR-H-elongata_contig5993:7935..7936 | 1622930970.8459105-UTR-H-elongata_contig5993:7935..7936 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig5993 7936..7936 - |
| 1691679645.4233143-UTR-H-elongata_contig5993:7935..7936 | 1691679645.4233143-UTR-H-elongata_contig5993:7935..7936 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig5993 7936..7936 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930970.748044-CDS-H-elongata_contig5993:4468..4593 | 1622930970.748044-CDS-H-elongata_contig5993:4468..4593 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 4469..4593 - |
| 1691679645.3715916-CDS-H-elongata_contig5993:4468..4593 | 1691679645.3715916-CDS-H-elongata_contig5993:4468..4593 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 4469..4593 - |
| 1622930970.7673607-CDS-H-elongata_contig5993:6283..6384 | 1622930970.7673607-CDS-H-elongata_contig5993:6283..6384 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 6284..6384 - |
| 1691679645.3822086-CDS-H-elongata_contig5993:6283..6384 | 1691679645.3822086-CDS-H-elongata_contig5993:6283..6384 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 6284..6384 - |
| 1622930970.785907-CDS-H-elongata_contig5993:6857..7009 | 1622930970.785907-CDS-H-elongata_contig5993:6857..7009 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 6858..7009 - |
| 1691679645.391107-CDS-H-elongata_contig5993:6857..7009 | 1691679645.391107-CDS-H-elongata_contig5993:6857..7009 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 6858..7009 - |
| 1622930970.8122633-CDS-H-elongata_contig5993:7444..7585 | 1622930970.8122633-CDS-H-elongata_contig5993:7444..7585 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 7445..7585 - |
| 1691679645.4025836-CDS-H-elongata_contig5993:7444..7585 | 1691679645.4025836-CDS-H-elongata_contig5993:7444..7585 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 7445..7585 - |
| 1622930970.8284047-CDS-H-elongata_contig5993:7764..7935 | 1622930970.8284047-CDS-H-elongata_contig5993:7764..7935 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 7765..7935 - |
| 1691679645.4150255-CDS-H-elongata_contig5993:7764..7935 | 1691679645.4150255-CDS-H-elongata_contig5993:7764..7935 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig5993 7765..7935 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5993.13527.1 >prot_H-elongata_contig5993.13527.1 ID=prot_H-elongata_contig5993.13527.1|Name=mRNA_H-elongata_contig5993.13527.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
MLRGEVRSSGAIFDPYVYRGEDGGKALPLMMTTQGLKTRWGIMRSHIKSG VCAGIIQKHVPEFHASKFPPVANEVFKNFVEAHRKGDTHALAGLTTEEFY ATLKGELKQARKDGGNRYAFRVLGFKKTTHVLQMREHRKKHVSDREGWGQ ASRTPLQSEREMVTVDASGREVRPEDGKEPMKIDNITIGTFEVFFGDDQK RWRLALLQELGGAPVHSQRRAVNITDSKQ* back to topmRNA from alignment at H-elongata_contig5993:3930..7936- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig5993.13527.1 ID=mRNA_H-elongata_contig5993.13527.1|Name=mRNA_H-elongata_contig5993.13527.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4007bp|location=Sequence derived from alignment at H-elongata_contig5993:3930..7936- (Himanthalia elongata Himel1 dioecious) GATGCTCAGGGGGGAGGTTCGCAGCTCCGGAGCAATATTCGATCCATACG
TATACCGCGGCGAAGACGGCGGCAAAGCGCTGCCACTGATGATGACCACC
CAAGGGCTCAAGACACGATGGGGGATCATGCGCAGTCACATCAAATCTGG
AGTGTGTGCGGGAATCATCCAGGCGAGAGCGAAGCTTCGCGAGCGGGCAG
ACCGCACGATTTATGATAATTAATGGGTATTGTTAGGCTCTGTCCGGTCC
CATCAACAGTACTACCGCGACTCCCCAAGGCATCAACTGCCGCCACTTGT
CCGCTGCGCTCGTCCCTTGCTGATCACCATACTTGTCATCGACACTCGTA
GAAGCATGTGCCGGAGTTCCATGCATCCAAGTTTCCTCCTGTTGCCAACG
AGGTTTTCAAGAATTTCGTCGAGGCGCACCGGAAGGGAGACACGCACGCC
CTGGCGGGGTTGACCACGGAGGAGTTCTACGCCACGCTCAAGGTGATCCA
AGTGGACTCTGTGCATCCCTCAGTCGACGTTATAGCTAAATTTGTTTATT
TTATACAATAAGCGAGTAAGGGCTGTATGAATATCCTCCGAACGAGGGAA
AGCCTTTTTGTTGAGTGTTTGACCCAGATATGTACCGACAGCATGCCAAC
GGCATCAGCAGTACACTTGTGGGGAATGTCCTCGCTGTGAAAGCTGGCGC
ATTCTGACTGATTTTTTGGCGTATGTAACTTTAGTAAGGCGCGACATACG
ATCGTCAAACCGTCACCCGTCCTCGATCCGTCGATCGGTCTGTCGTTCAT
TCAGACGTTTCGGTGGCAGAATGCCACCTCATTTGGAGATGACAGGGAGG
TGGTGCACATACAACCCCCCTCTCCCAGGCTCATGCACGACCATCCATCG
CCCGCGTGTGTGCCGTGCTTTACCCAGGGCGAGCTGAAGCAGGCCAGAAA
GGACGGGGGCAACCGGTACGCCTTCCGCGTGTTGGGTTTCAAGAAAACGA
CCCACGTCCTGCAGATGAGGGAACACCGCAAGAAGCACGTATCCGATCGA
GAGGGCTGGGGGCAGGCAAGTAGGACTCCGTTGTGGCACGCTGACTCCTC
GCAGAGTCGGCGGGGGTGCGCGAGAAAAATTCCATACTACCAAGAACTGT
AGCAGCTCGCGTTCGTTTCTCATTTCCTCCGTTCTCTTCGGTAAAGGGGT
TTCGTTCGTGTTGAAAACGCGTGTTGGAAAGCTCGGAGCTCCCCCTGTTC
GTTTTCTCGTTGCGCTTGTTACGGCTGCCACGACATCGTCTTTCGTTGAG
ATAATCACACTATTAGTATGGTAGATTCATCAAGAAATTCGTGGGGAGGT
GGGGGAAAGTGGGGAGGATCTATAATACTGGTTTTCCCTGCAGCAAAATG
AGGCAAGAGCGATGATGTGCATCACCAGCGGTTGGCGAAGTCTTTCTTCC
TCCTCTTTTGGTGGCTTGGGGTGCGTGCGCGCTCGCGACGAGCTCTGACG
TGCCGCCTCGCCCACCGTTGGGCTTTTGCCTGACCCATCAGGTGACGTGC
AGGTTGCAAAGCGAGAGAGAAATGGTGACCGTGGACGCAAGCGGGAGGGA
GGTGCGGCCTGAGGATGGCAAGGAACCCATGAAGATAGACAACATCACAA
TAGGTAGGGGCAGAGGAGGAAGGGCATGTGGGGAAGAGATAAGGACGGGC
CATGCCGCTGAAAAGATGTTGCGCGATTGGCCATCGACTCTCGTAGTGTA
TCGCAATACAATATAGTATTGTGGCGATAGGTAAAATCATCGCTTGTCTT
TGCAAACGCCTGACACACACAGTAACTACCGGGTGGGTCATAAAATTATA
AGATTACAAAGGGCGGATTACGTTGTTATGTGCAATTTAATAAATACACA
CACACACACATACACAGAACGATGTCGCTATGTGCTGGACCCGCTAGACG
ATTCGTACTTCCAAGTGGGAAAGGACTGCCGGAGGCAAGGAAGAACTACA
GCTTTCATGACGTAGTGACCTCTCGATCATATGTGCAAATTATTTTATTA
ACATTGGATTAACGTGTGGATGACGACCCCTACCGGAGGCGGGACGGAAC
GGGACAGAACGGAAGCCTTTAGTTTTGATGGGAATAATAATGGCGTTCCC
GCTCGCTTTTCTCTCGGCAGATGCATAAATCACTCTATACGAAGTATCAC
TACACTTAACGACGTGGTACGTTCCAAGTGGGACGCAGGCGGCGAAAGCA
CAGGCCTTTAATTTGGTACGGGATGGGTTATCCCCGGGGTGTAATTGAAT
CAAGCATCTCACCTAAGTTGCGCCACCGGCTTAAGCAGCTGCAGCCCTTG
TGGCGTGCTAGGGTAGCCATTCTACGATATTAATAGCTAGTCTCCCGTAT
CCCCATGAATGATGCTCTCGGCGGGAAAATTATTTTATTTTATTTTTTAA
ATGAACTCATTCCAACCCTCCGAACATCTACACCTTCTTAGCACCGTGAG
AGGAGCCATCCAGAGGACCAACTATCGTCAGGATCGAATGTGTACATTAC
TACCTTTTAGCACAAAATCGTCACGCACGTGATAAATCGTGTTCCCCACT
AATAATAGTGGATTCATCGGGTCAATGGAATAATGTGAAGGATCCCATTA
TTATCCCGTACACTTTACATTATTCGTCATGTGGGTGTTGTAGACCGCTG
TAATACCGCTGTAATGAGCTAAGAACTAGCGGTCAGAATAACGGAATACA
TCAGTGAGTTACTCGCGAGTCCCTACGATCCGACCCACGTATCTTCAGTA
GCATTTTGGTTTTACCATCGCCGTCACGGGTTTTTACCATCGCTGTCACG
GGGTTTTTTCACGCCTCCAATAAATAGTCACCGATATTCATCCCGAGATA
ACTAGCTCTGAAGAGGAAGCATTGACAAGGGGAGCAGCGGCCCTTTCTCG
GAGCGAAACGGTTCGGGCCTTCGGACCCCGTCAATCATCCCCTGTATTGT
GGAGTTATGATGGTCGAATTGCAAGAATACGAGGAGTGCAAGATAACGGT
CTGACGGTCTGTCGCAGAACGCTGTGAGGGCGTTAAGCCATTTGCACCAT
GAGTACAACTACACGCACCTGCGCAATGCTCTCGTGAAATATCGACACGT
ACAAGCGATCGCCCACGGCATCGCTTGTTGTCCCGAAACGATCTAAATAT
GAAAATGCTGAAAGTGGACACTTGATTGGTACCGGGTAGTGGGTTGAATT
GTTCCGCTGACCAATTACGTTACTCCTCACTTCCTTTCTTTCTTCGTTTA
TTCCGGCCGCGCCCTTCCCCTCGCGGCACCGATTTCTGAAAAGGAACATT
CGAGGTCTTCTTCGGAGATGATCAGAAGAGGTGGAGATTGGCCCTTTTGC
AAGAGCTGGGTGGCGCTCCGGTTCACTCGCAGAGAAGAGCCGTCAACATA
ACTGACTCCAAGCAGTAGAGCTAGAGCACCACGATTGATCGATCGATCCA
TCGACGCACTCTTCTCTCAGTCGCTGTGTGACATCCATTCATCGTTTCAC
TGTTTATTGTCCGTCGCATCCTCTAGCATTGTATAGGTATGTAGCGTATG
TCGGCCAAGCCAAGCAGCGTGTGAAGAATTTGAGGGTCCACTCGACAGTT
GCTCGACCTCGCACGGCCTTCAGCTTCGAACAAGGAAAGCCGTGGGCAGG
GAGTGATGACGTAGCTGTTACCAGTCGCTATTTGAATCCGCATCGAACGA
AGGGTCAAGTGGCTGAATCTTAGGGTGAAGTTTATCGAGCGTATCGGGAT
TATGTAACGCCATCGTTGGGCCAACTTGAAACATCATAACGCCTCCTTAA
ACGACAGGATTTTGCGACGCGAGGGCGTGCTTCCGATTCAACGATCGATC
GTCGTAAGGTTAGGAGCAGCCCTCGAAATATCCGCGGTTGAAAGGGACTA
ATCGCAAATAGTTGTCCTACGCAAGCAGGGGCTCTTTGGCTTCTCGGCAT
TTTTGCC back to topCoding sequence (CDS) from alignment at H-elongata_contig5993:3930..7936- >mRNA_H-elongata_contig5993.13527.1 ID=mRNA_H-elongata_contig5993.13527.1|Name=mRNA_H-elongata_contig5993.13527.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig5993:3930..7936- (Himanthalia elongata Himel1 dioecious) ATGCTCAGGGGGGAGGTTCGCAGCTCCGGAGCAATATTCGATCCATACGT ATACCGCGGCGAAGACGGCGGCAAAGCGCTGCCACTGATGATGACCACCC AAGGGCTCAAGACACGATGGGGGATCATGCGCAGTCACATCAAATCTGGA GTGTGTGCGGGAATCATCCAGATGCTCAGGGGGGAGGTTCGCAGCTCCGG AGCAATATTCGATCCATACGTATACCGCGGCGAAGACGGCGGCAAAGCGC TGCCACTGATGATGACCACCCAAGGGCTCAAGACACGATGGGGGATCATG CGCAGTCACATCAAATCTGGAGTGTGTGCGGGAATCATCCAGAAGCATGT GCCGGAGTTCCATGCATCCAAGTTTCCTCCTGTTGCCAACGAGGTTTTCA AGAATTTCGTCGAGGCGCACCGGAAGGGAGACACGCACGCCCTGGCGGGG TTGACCACGGAGGAGTTCTACGCCACGCTCAAGAAGCATGTGCCGGAGTT CCATGCATCCAAGTTTCCTCCTGTTGCCAACGAGGTTTTCAAGAATTTCG TCGAGGCGCACCGGAAGGGAGACACGCACGCCCTGGCGGGGTTGACCACG GAGGAGTTCTACGCCACGCTCAAGGGCGAGCTGAAGCAGGCCAGAAAGGA CGGGGGCAACCGGTACGCCTTCCGCGTGTTGGGTTTCAAGAAAACGACCC ACGTCCTGCAGATGAGGGAACACCGCAAGAAGCACGTATCCGATCGAGAG GGCTGGGGGCAGGCAAGTAGGACTCCGGCGAGCTGAAGCAGGCCAGAAAG GACGGGGGCAACCGGTACGCCTTCCGCGTGTTGGGTTTCAAGAAAACGAC CCACGTCCTGCAGATGAGGGAACACCGCAAGAAGCACGTATCCGATCGAG AGGGCTGGGGGCAGGCAAGTAGGACTCCGTTGCAAAGCGAGAGAGAAATG GTGACCGTGGACGCAAGCGGGAGGGAGGTGCGGCCTGAGGATGGCAAGGA ACCCATGAAGATAGACAACATCACAATAGGTTGCAAAGCGAGAGAGAAAT GGTGACCGTGGACGCAAGCGGGAGGGAGGTGCGGCCTGAGGATGGCAAGG AACCCATGAAGATAGACAACATCACAATAGGAACATTCGAGGTCTTCTTC GGAGATGATCAGAAGAGGTGGAGATTGGCCCTTTTGCAAGAGCTGGGTGG CGCTCCGGTTCACTCGCAGAGAAGAGCCGTCAACATAACTGACTCCAAGC AGTAGGAACATTCGAGGTCTTCTTCGGAGATGATCAGAAGAGGTGGAGAT TGGCCCTTTTGCAAGAGCTGGGTGGCGCTCCGGTTCACTCGCAGAGAAGA GCCGTCAACATAACTGACTCCAAGCAGTAG back to top
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