mRNA_H-elongata_contig59908.13524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59908.13524.1
Unique NamemRNA_H-elongata_contig59908.13524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.280e-50
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +VPALGDSSASLVLS  DPF L TKPHGHGDVHHLLLRE VAE L+  GFEWLFFFQDTNALVLNSLLPALGVS SKGY MNSICVPRKAKEAAG ITALT+DDG
Sbjct:  305 KVPALGDSSASLVLS--DPFTLETKPHGHGDVHHLLLREGVAEKLKGGGFEWLFFFQDTNALVLNSLLPALGVSASKGYHMNSICVPRKAKEAAGAITALTKDDG 407          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A836CDZ7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.940e-38
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITA 297
            +VPALGDS ASLV    D F L TKPHGHGDVHHLL R  +AEDL+  GF++L FFQDTNALVLNS+LP LGVS +KGY MNSICVPRKA+EAAG + A
Sbjct:  271 KVPALGDSDASLVTQSGDRFALETKPHGHGDVHHLLHRSGIAEDLKSRGFKYLVFFQDTNALVLNSILPTLGVSATKGYAMNSICVPRKAQEAAGAVVA 369          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.310e-35
Identity = 70/106 (66.04%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQR-SGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +VPA+GD  A LVL   DPF + TKPHGHGDVH LL RE VA   Q+ SG EW+FF QDTNALV+NS+LPALGVS    Y MNSIC+PR AKE AG IT LT  DG
Sbjct:  213 KVPAVGDVQAHLVLRGDDPFQVETKPHGHGDVHILLNREGVARAWQQQSGVEWVFFLQDTNALVINSVLPALGVSALNDYHMNSICIPRAAKEEAGAITKLTHSDG 318          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A7R9U1R1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1R1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.220e-34
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRD 309
            +V AL D  ASL +SE DP+++ TKPHGHGDVHHL+L+E+V +       +WLFF QDTN LV+NS+LPALGVS ++  DMNSIC+PR A EAAG IT L ++
Sbjct:  257 KVAALSDRRASLAMSEDDPYVIETKPHGHGDVHHLMLKEKVLDQWAERSIKWLFFLQDTNLLVINSILPALGVSKARDLDMNSICIPRTAGEAAGAITRLVKE 359          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A7S2BNV6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNV6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.030e-33
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITAL 300
            +VPAL DS A L + + D + ++TKPHGHGDVH LLL+  +A     SG EW FFFQDTN LV+++LLP LGVSV KGY MNS+CVPRKA+EAAG IT L
Sbjct:  273 KVPALSDSQAHLAMEKDDRWSVITKPHGHGDVHQLLLQSGLARSWADSGKEWAFFFQDTNPLVVHALLPMLGVSVDKGYVMNSLCVPRKAQEAAGAITTL 372          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: W7UBR1_9STRA (UDPglucose pyrophosphorylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBR1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.270e-32
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +VPAL DS+A L  +  D + L TKPHGHGDVHHLLLR  +      +G +W+FF QDTNALV+NS+LPAL VS + GYDMNSIC+PRKA EA+G IT LT  +G
Sbjct:  324 KVPALQDSNARL--ASADTYTLDTKPHGHGDVHHLLLRSGLTAQWLAAGKKWVFFLQDTNALVVNSVLPALAVSATHGYDMNSICIPRKAGEASGAITKLTNRNG 426          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A4D9D7Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.100e-32
Identity = 64/105 (60.95%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +VPAL DS A L  +  D + L TKPHGHGDVHHLLLR  +      +G +W+FF QDTNALV+NS+LPAL VS + GYDMNSIC+PRKA EA+G IT LT  +G
Sbjct:  151 KVPALQDSEARL--APADTYTLDTKPHGHGDVHHLLLRSGLTAQWLAAGKKWVFFLQDTNALVVNSVLPALAVSATHGYDMNSICIPRKAGEASGAITKLTTRNG 253          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A7J7QCA4_9CHLO (UDP-sugar pyrophosphorylase 1 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QCA4_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 4.160e-32
Identity = 62/105 (59.05%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +VP L D+ A L L   DP+ + TKPHGHGDVH LL R  +A+  QR G +W+ FFQDTNALV  +LL ALG+S    YDMNS+ VPRKAKEA G IT LT+ DG
Sbjct:  269 KVPCLTDNDAHLALDPSDPYAVQTKPHGHGDVHGLLHRNGLAQQWQRQGLQWVCFFQDTNALVFRALLAALGLSAVSDYDMNSLAVPRKAKEAIGAITRLTKADG 373          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A8I6YQQ9_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6YQQ9_HORVV)

HSP 1 Score: 117 bits (293), Expect = 1.410e-31
Identity = 56/105 (53.33%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITALTRDDG 315
            +V  L D+ AS  L   D + + TKPHGHGDVH LL    + E  + +G  W+ FFQDTN L+ N++  ALGVS +KGY++NS+ VPRKAKEA GGIT LT  DG
Sbjct:   34 KVACLADNDASFALDPNDKYKIQTKPHGHGDVHSLLYSSGLLEQWKSTGRRWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKLTHVDG 138          
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Match: A0A8J9T0J6_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T0J6_PHATR)

HSP 1 Score: 118 bits (295), Expect = 1.540e-30
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGFEWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITAL 300
            +V AL D +A L L ++D + + TKPHGHGDVHHLL RE + +  Q  G   + F QDTNALV+NS++PALGVSV++G+ MNSIC+PR A EAAG I  L
Sbjct:  169 KVAALKDGAAGLALDDKDRWTVETKPHGHGDVHHLLYREGLVDQWQDQGKTHVVFLQDTNALVINSVVPALGVSVTRGFHMNSICIPRLAGEAAGAIARL 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59908.13524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ2_ECTSI1.280e-5086.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDZ7_9STRA1.940e-3871.72Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S2Y4M2_9STRA5.310e-3566.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1R1_9STRA3.220e-3459.22Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2BNV6_9STRA3.030e-3363.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
W7UBR1_9STRA2.270e-3260.95UDPglucose pyrophosphorylase n=1 Tax=Nannochlorops... [more]
A0A4D9D7Z1_9STRA3.100e-3260.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7J7QCA4_9CHLO4.160e-3259.05UDP-sugar pyrophosphorylase 1 n=1 Tax=Scenedesmus ... [more]
A0A8I6YQQ9_HORVV1.410e-3153.33Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A8J9T0J6_PHATR1.540e-3057.00Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59908contigH-elongata_contig59908:511..2161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.2e-43
Seed eggNOG ortholog2880.D8LCQ2
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2388@2759
EC2.7.7.23,2.7.7.64,2.7.7.83
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUTP--glucose-1-phosphate uridylyltransferase family
Ec32 orthologEc-03_002030.1
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.3746238-CDS-H-elongata_contig59908:510..6391622930970.3746238-CDS-H-elongata_contig59908:510..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59908 511..639 -
1691679645.2440624-CDS-H-elongata_contig59908:510..6391691679645.2440624-CDS-H-elongata_contig59908:510..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59908 511..639 -
1622930970.4223294-CDS-H-elongata_contig59908:1975..21611622930970.4223294-CDS-H-elongata_contig59908:1975..2161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59908 1976..2161 -
1691679645.261025-CDS-H-elongata_contig59908:1975..21611691679645.261025-CDS-H-elongata_contig59908:1975..2161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59908 1976..2161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59908.13524.1prot_H-elongata_contig59908.13524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59908 511..2161 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59908.13524.1

>prot_H-elongata_contig59908.13524.1 ID=prot_H-elongata_contig59908.13524.1|Name=mRNA_H-elongata_contig59908.13524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
QVPALGDSSASLVLSERDPFLLVTKPHGHGDVHHLLLRERVAEDLQRSGF
EWLFFFQDTNALVLNSLLPALGVSVSKGYDMNSICVPRKAKEAAGGITAL
TRDDG
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mRNA from alignment at H-elongata_contig59908:511..2161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59908.13524.1 ID=mRNA_H-elongata_contig59908.13524.1|Name=mRNA_H-elongata_contig59908.13524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1651bp|location=Sequence derived from alignment at H-elongata_contig59908:511..2161- (Himanthalia elongata Himel1 dioecious)
CAGGTACCCGCGCTAGGGGACAGCTCGGCCAGCCTCGTCCTCTCCGAGAG AGACCCCTTCTTGCTCGTGACCAAACCTCACGGGCATGGCGATGTACACC ACCTCCTTCTGAGGGAAAGAGTGGCCGAGGACCTGCAGCGGAGTGGTTTC GAGTGGCTCTTCTTTTTCCAAGACACCAATGCTCTCGTGAGTGGGATCTA GTTAGTTGTTTGGCGTAGCTTTTAAGGTTGAGGCCTGTTTCAAGGATTGG TACGATAAGGTGAAGACGTGTTAATAATGCTACCTGCTATTATTATTAGT AGTAGTATTATTAGTAGTATTATTGCTATTATTATTATTTTTAAAACTTT TATTATTATTATTATTATTATTATTATTATTATTATTGAGAGCATGAACC GGATTATCAACCGCATACTGGTTGATATTGCGAAGAAACACACACATGAG AGGTTTTCGGAATAAGTATCATTCATCCCCCCCTAGGAGGATCAATACGA GTGGCATAGAAGGACTAGGACGACAGGGCCGGATTGCGCGGTTATGTGCA ATTTAATGAATACGCACACACTATGGTGTAATCCCTTTTTGTGAGGATCA ATGTGAGAGTAGCCTACAAGAGCTAGCATGACAGAGCCGGATTGCGCGGT TATTTGTGTACAATTTAATAAATATACATATATACATACACACGCTATCC TTCACAATACTATACTATGCTATACTATACTATACTGTACTATACTATAC TATACCATACTATACCATACTATACTATACTATACTATACTGTACTATAG CATAGTATAGTATATTATGAAAAAACATATAAACTCATTCCAACCCTCCG AACATCCAAAGTTTCTTTGCACCATGAGAGGTGTAGTCCAGGGGACCAAC TATCGTCAGGTTCGAATGTGGACATTTTAACTAGATCTAAGCACAAAATA CTCCACTATACTATACTATACTATAATATACTATAATATACTATACTGTA CTGTACTCTAAGGTCGAGTAGTCTGAAGTGTCAAGATAACTGCCAAGTCT AAAGTGCGTAAATCATGGGTTTGAGTCATACCAGGATTGCTTATTTTATT TCTGTAGCGGCCATAGTCCATACTATAAATATTATCAATACTTTACTGTA GCGGTCATAGTCCATATTAATGTAGTATTAACACTATCAGTACTAATAAT CATACAACACCTGAAAACGGGAGTAAGTAAAGTCCAATCATCGCAGAGTT GCCTCGATCGCGGTGAACCAATATGTGGCGTGAACCGGCAGGGCGAAACA GGTTGATTGATCCTTTAGATGGGATGGGATGGGATGGAAAACATTGAAGT TGGTGGAATCCTTTTTTAGATGGGATTAGAAGCCTAGCACGTTGGTGGCA ATGGTAATAATTAACATATACGTATAGATATTAATATACATACATTAACA TATACATTGCACATTACATTAGTATTAACGTTAACGTCTCGATGTTGTGC TGTATCCCCCTGTATTCGACAGGTTCTGAACTCGCTGCTGCCCGCGCTGG GCGTTAGCGTCAGCAAGGGCTACGACATGAATTCCATCTGTGTTCCGAGG AAGGCCAAGGAGGCCGCGGGAGGGATCACGGCACTCACCCGCGATGATGG G
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Coding sequence (CDS) from alignment at H-elongata_contig59908:511..2161-

>mRNA_H-elongata_contig59908.13524.1 ID=mRNA_H-elongata_contig59908.13524.1|Name=mRNA_H-elongata_contig59908.13524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig59908:511..2161- (Himanthalia elongata Himel1 dioecious)
CAGGTACCCGCGCTAGGGGACAGCTCGGCCAGCCTCGTCCTCTCCGAGAG
AGACCCCTTCTTGCTCGTGACCAAACCTCACGGGCATGGCGATGTACACC
ACCTCCTTCTGAGGGAAAGAGTGGCCGAGGACCTGCAGCGGAGTGGTTTC
GAGTGGCTCTTCTTTTTCCAAGACACCAATGCTCTCCAGGTACCCGCGCT
AGGGGACAGCTCGGCCAGCCTCGTCCTCTCCGAGAGAGACCCCTTCTTGC
TCGTGACCAAACCTCACGGGCATGGCGATGTACACCACCTCCTTCTGAGG
GAAAGAGTGGCCGAGGACCTGCAGCGGAGTGGTTTCGAGTGGCTCTTCTT
TTTCCAAGACACCAATGCTCTCGTTCTGAACTCGCTGCTGCCCGCGCTGG
GCGTTAGCGTCAGCAAGGGCTACGACATGAATTCCATCTGTGTTCCGAGG
AAGGCCAAGGAGGCCGCGGGAGGGATCACGGCACTCACCCGCGATGATGG
GGTTCTGAACTCGCTGCTGCCCGCGCTGGGCGTTAGCGTCAGCAAGGGCT
ACGACATGAATTCCATCTGTGTTCCGAGGAAGGCCAAGGAGGCCGCGGGA
GGGATCACGGCACTCACCCGCGATGATGGG
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