mRNA_H-elongata_contig59900.13522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59900.13522.1
Unique NamemRNA_H-elongata_contig59900.13522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A3M7PW45_BRAPC (Sugar transporter SWEET n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PW45_BRAPC)

HSP 1 Score: 55.8 bits (133), Expect = 9.540e-8
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    4 VFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            V   +STE LS  L   +  C+LLW I+G+L KD F+Y+PN++G   S AQV
Sbjct:  148 VMMSKSTESLSFCLCVANLSCSLLWSIYGILLKDKFIYIPNIVGSLLSFAQV 199
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V0YJY1_TRIPS (Sugar transporter SWEET (Fragment) n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V0YJY1_TRIPS)

HSP 1 Score: 54.3 bits (129), Expect = 4.810e-7
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  210 EVIKSKSCESLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 262
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V1FLS8_TRIPS (Sugar transporter SWEET n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FLS8_TRIPS)

HSP 1 Score: 54.3 bits (129), Expect = 5.280e-7
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  247 EVIKSKSCESLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 299
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V1ERH9_TRIPS (Sugar transporter SWEET1 n=3 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1ERH9_TRIPS)

HSP 1 Score: 54.3 bits (129), Expect = 5.590e-7
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  328 EVIKSKSCESLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 380
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A058ZT16_EUCGR (Bidirectional sugar transporter SWEET n=4 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A058ZT16_EUCGR)

HSP 1 Score: 53.9 bits (128), Expect = 5.690e-7
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    4 VFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            V K +S E +   L+  +F+CAL WFI+G+L+ DPFV VPN  G     AQ+
Sbjct:  152 VIKTKSVEFMPFFLSLFAFLCALSWFIYGLLSGDPFVLVPNAFGTGLGIAQL 203
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: UPI000D725829 (sugar transporter SWEET1-like isoform X2 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D725829)

HSP 1 Score: 52.8 bits (125), Expect = 8.580e-7
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    4 VFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            V + +STE +S  L   +F+ AL WF++G+L KD F+ +PN++G      QV
Sbjct:  106 VLRTKSTESMSFLLCFFNFVAALAWFVYGLLLKDSFIIIPNIIGGILGLTQV 157
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BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V0WUN4_9BILA (Sugar transporter SWEET (Fragment) n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0WUN4_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 9.760e-7
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  160 EVIKTKSCECLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 212
[Close]
BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V0ZVU1_9BILA (Sugar transporter SWEET n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0ZVU1_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 1.310e-6
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  226 EVIKTKSCECLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 278
[Close]
BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: UPI000D73872C (sugar transporter SWEET1-like isoform X1 n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D73872C)

HSP 1 Score: 52.8 bits (125), Expect = 1.340e-6
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    4 VFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            V + +STE +S  L   +F+ AL WF++G+L KD F+ +PN++G      QV
Sbjct:  151 VLRTKSTESMSFLLCFFNFVAALAWFVYGLLLKDSFIIIPNIIGGILGLTQV 202
[Close]
BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Match: A0A0V1CV62_TRIBR (Sugar transporter SWEET1 n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1CV62_TRIBR)

HSP 1 Score: 53.1 bits (126), Expect = 1.420e-6
Identity = 20/53 (37.74%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSAAQV 159
            +V K +S E L  PL + + I A  WF++G+L  DP++ +PN++G+A +  Q+
Sbjct:  302 EVIKTKSCECLPLPLCAANLIVAAQWFLYGLLVSDPYIKIPNMIGIALAVFQL 354
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59900.13522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M7PW45_BRAPC9.540e-848.08Sugar transporter SWEET n=1 Tax=Brachionus plicati... [more]
A0A0V0YJY1_TRIPS4.810e-737.74Sugar transporter SWEET (Fragment) n=1 Tax=Trichin... [more]
A0A0V1FLS8_TRIPS5.280e-737.74Sugar transporter SWEET n=1 Tax=Trichinella pseudo... [more]
A0A0V1ERH9_TRIPS5.590e-737.74Sugar transporter SWEET1 n=3 Tax=Trichinella pseud... [more]
A0A058ZT16_EUCGR5.690e-746.15Bidirectional sugar transporter SWEET n=4 Tax=Euca... [more]
UPI000D7258298.580e-740.38sugar transporter SWEET1-like isoform X2 n=1 Tax=P... [more]
A0A0V0WUN4_9BILA9.760e-737.74Sugar transporter SWEET (Fragment) n=8 Tax=Trichin... [more]
A0A0V0ZVU1_9BILA1.310e-637.74Sugar transporter SWEET n=5 Tax=Trichinella TaxID=... [more]
UPI000D73872C1.340e-640.38sugar transporter SWEET1-like isoform X1 n=1 Tax=P... [more]
A0A0V1CV62_TRIBR1.420e-637.74Sugar transporter SWEET1 n=1 Tax=Trichinella brito... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59900contigH-elongata_contig59900:102..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog2880.D8LFA7
Preferred nameswt-4
KEGG koko:K15382
KEGG TC9.A.58.1
GOsGO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008643,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045087,GO:0050829,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071944,GO:0098542
EggNOG free text desc.sugar transmembrane transporter activity
EggNOG OGsKOG1623@1,KOG1623@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMtN3-like protein
Ec32 orthologEc-01_004270.1
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.2437828-CDS-H-elongata_contig59900:101..2901622930970.2437828-CDS-H-elongata_contig59900:101..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59900 102..290 +
1691679645.1932824-CDS-H-elongata_contig59900:101..2901691679645.1932824-CDS-H-elongata_contig59900:101..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59900 102..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59900.13522.1prot_H-elongata_contig59900.13522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59900 102..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59900.13522.1

>prot_H-elongata_contig59900.13522.1 ID=prot_H-elongata_contig59900.13522.1|Name=mRNA_H-elongata_contig59900.13522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QVFKRQSTEGLSRPLASISFICALLWFIHGVLTKDPFVYVPNLLGVAFSA
AQVHHTTSPQLI*
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mRNA from alignment at H-elongata_contig59900:102..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59900.13522.1 ID=mRNA_H-elongata_contig59900.13522.1|Name=mRNA_H-elongata_contig59900.13522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig59900:102..290+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCAAGCGACAATCTACTGAGGGGCTATCCCGGCCACTGGCGTC
GATTTCCTTTATTTGCGCGCTGCTTTGGTTCATTCACGGCGTGCTGACTA
AAGACCCCTTCGTCTATGTGCCCAACCTCTTGGGGGTTGCCTTCAGCGCC
GCACAGGTACACCATACAACCTCGCCTCAGCTCATCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig59900:102..290+

>mRNA_H-elongata_contig59900.13522.1 ID=mRNA_H-elongata_contig59900.13522.1|Name=mRNA_H-elongata_contig59900.13522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig59900:102..290+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTCAAGCGACAATCTACTGAGGGGCTATCCCGGCCACTGGCGTC
GATTTCCTTTATTTGCGCGCTGCTTTGGTTCATTCACGGCGTGCTGACTA
AAGACCCCTTCGTCTATGTGCCCAACCTCTTGGGGGTTGCCTTCAGCGCC
GCACAGGTACACCATACAACCTCGCCTCAGCTCATCTAACAGGTGTTCAA
GCGACAATCTACTGAGGGGCTATCCCGGCCACTGGCGTCGATTTCCTTTA
TTTGCGCGCTGCTTTGGTTCATTCACGGCGTGCTGACTAAAGACCCCTTC
GTCTATGTGCCCAACCTCTTGGGGGTTGCCTTCAGCGCCGCACAGGTACA
CCATACAACCTCGCCTCAGCTCATCTAA
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