mRNA_H-elongata_contig59896.13520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59896.13520.1
Unique NamemRNA_H-elongata_contig59896.13520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A7S2UU88_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU88_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.480e-14
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPEIAQ VHK++RS +A K+G+ VA  VRIQYG
Sbjct:  161 EPVWAIGTGLTATPEIAQSVHKYIRSCIAKKFGDEVAEGVRIQYG 205
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A7S2XYZ2_9STRA (Triosephosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPEIAQ VH ++RS +A KYG+ VA+ VRIQYG
Sbjct:  208 EPVWAIGTGLTATPEIAQNVHAYIRSWVAGKYGQEVADEVRIQYG 252
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: W7T695_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T695_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.370e-13
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPEIAQ VH ++R++L + YG++VA+ V IQYG
Sbjct:    9 EPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYG 53
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A835ZJI0_9STRA (Triosephosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGL ATPE+AQ VH ++RS LA KYG++VA+ VRIQYG
Sbjct:  170 EPVWAIGTGLVATPEVAQSVHAYIRSWLAGKYGQAVADDVRIQYG 214
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A7S4D8V7_HETAK (Triosephosphate isomerase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8V7_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 2.030e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPEIAQ VH  +R  +A KYG++VA+ VRIQYG
Sbjct:  252 EPVWAIGTGLTATPEIAQKVHAFIRGWIAGKYGKAVADEVRIQYG 296
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: K8EQZ8_9CHLO (Triosephosphate isomerase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EQZ8_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATP IAQ VHK +R+ +A+KY +SVA+ VRIQYG
Sbjct:  299 EPVWAIGTGLTATPAIAQSVHKLIRNWIAEKYSKSVADRVRIQYG 343
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A2E8WBT4_9BACT (Triosephosphate isomerase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E8WBT4_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 2.910e-12
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPE A  VH  +RS+LAD +G+  A+SVRIQYG
Sbjct:   44 EPVWAIGTGLTATPEQADEVHALIRSVLADAHGQETADSVRIQYG 88
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A7R9VIX2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VIX2_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 4.370e-12
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATP IAQ VH  +R +LAD YG+ +A+  RIQYG
Sbjct:    5 EPVWAIGTGLTATPAIAQNVHFAIREMLADMYGQEIADKTRIQYG 49
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A4D9CPZ8_9STRA (Triosephosphate isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CPZ8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.390e-12
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTGLTATPEIAQ VH ++R++L + YG++VA+ V IQYG
Sbjct:  219 EPVWAIGTGLTATPEIAQDVHSNIRAILGEAYGQAVADKVVIQYG 263
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BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Match: A0A4V3EV57_9FUSO (Triosephosphate isomerase n=1 Tax=Hypnocyclicus thermotrophus TaxID=1627895 RepID=A0A4V3EV57_9FUSO)

HSP 1 Score: 66.6 bits (161), Expect = 5.560e-12
Identity = 30/45 (66.67%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG 135
            E VWAIGTG TA+PE AQ VHK +R+LL D YGE +AN + IQYG
Sbjct:  167 EPVWAIGTGKTASPEQAQEVHKFIRNLLTDMYGEEIANEITIQYG 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59896.13520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UU88_9STRA2.480e-1473.33Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
A0A7S2XYZ2_9STRA1.120e-1373.33Triosephosphate isomerase n=1 Tax=Fibrocapsa japon... [more]
W7T695_9STRA1.370e-1366.67Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]
A0A835ZJI0_9STRA1.490e-1371.11Triosephosphate isomerase n=1 Tax=Tribonema minus ... [more]
A0A7S4D8V7_HETAK2.030e-1271.11Triosephosphate isomerase n=3 Tax=Heterosigma akas... [more]
K8EQZ8_9CHLO2.460e-1271.11Triosephosphate isomerase n=1 Tax=Bathycoccus pras... [more]
A0A2E8WBT4_9BACT2.910e-1268.89Triosephosphate isomerase n=1 Tax=Gemmatimonadetes... [more]
A0A7R9VIX2_9CHLO4.370e-1266.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A4D9CPZ8_9STRA4.390e-1266.67Triosephosphate isomerase n=1 Tax=Nannochloropsis ... [more]
A0A4V3EV57_9FUSO5.560e-1266.67Triosephosphate isomerase n=1 Tax=Hypnocyclicus th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59896contigH-elongata_contig59896:3383..3517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog41875.XP_007514600.1
EggNOG free text desc.Triosephosphate isomerase
EggNOG OGs34JCA@3041,37IFK@33090,COG0149@1,COG3386@1,KOG1643@2759,KOG4499@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.09697-CDS-H-elongata_contig59896:3382..35171622930970.09697-CDS-H-elongata_contig59896:3382..3517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59896 3383..3517 +
1691679645.1358228-CDS-H-elongata_contig59896:3382..35171691679645.1358228-CDS-H-elongata_contig59896:3382..3517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59896 3383..3517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59896.13520.1prot_H-elongata_contig59896.13520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59896 3383..3517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59896.13520.1

>prot_H-elongata_contig59896.13520.1 ID=prot_H-elongata_contig59896.13520.1|Name=mRNA_H-elongata_contig59896.13520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
EQVWAIGTGLTATPEIAQGVHKHVRSLLADKYGESVANSVRIQYG
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mRNA from alignment at H-elongata_contig59896:3383..3517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59896.13520.1 ID=mRNA_H-elongata_contig59896.13520.1|Name=mRNA_H-elongata_contig59896.13520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig59896:3383..3517+ (Himanthalia elongata Himel1 dioecious)
GAGCAGGTCTGGGCGATCGGTACGGGTCTTACGGCCACTCCAGAGATCGC
CCAGGGCGTGCACAAGCACGTGCGATCTTTGCTGGCGGACAAGTACGGCG
AGAGCGTGGCGAACTCGGTCAGGATACAGTACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig59896:3383..3517+

>mRNA_H-elongata_contig59896.13520.1 ID=mRNA_H-elongata_contig59896.13520.1|Name=mRNA_H-elongata_contig59896.13520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig59896:3383..3517+ (Himanthalia elongata Himel1 dioecious)
GAGCAGGTCTGGGCGATCGGTACGGGTCTTACGGCCACTCCAGAGATCGC
CCAGGGCGTGCACAAGCACGTGCGATCTTTGCTGGCGGACAAGTACGGCG
AGAGCGTGGCGAACTCGGTCAGGATACAGTACGGTGAGCAGGTCTGGGCG
ATCGGTACGGGTCTTACGGCCACTCCAGAGATCGCCCAGGGCGTGCACAA
GCACGTGCGATCTTTGCTGGCGGACAAGTACGGCGAGAGCGTGGCGAACT
CGGTCAGGATACAGTACGGT
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