mRNA_H-elongata_contig59891.13519.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59891.13519.1
Unique NamemRNA_H-elongata_contig59891.13519.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A097ITX1_9PHAE (Alanine transaminase n=8 Tax=Sargassum TaxID=3015 RepID=A0A097ITX1_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 9.060e-145
Identity = 202/235 (85.96%), Postives = 221/235 (94.04%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLC NT+GQLAMG+MVNPPK GDPS++TF+KER DILSSLRRRS+MVH+A+N++EGITCN+ADGALY FPRIRLS KA +AA  KGIPTDEYYCL+ILD TGIILVPGSGF QE+DTLHFRTTFL +EDTM++TL + ASAH+KFMD HRD
Sbjct:  267 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLAMGMMVNPPKPGDPSYQTFEKERGDILSSLRRRSMMVHKALNEMEGITCNKADGALYAFPRIRLSNKAVQAAADKGIPTDEYYCLKILDETGIILVPGSGFGQEEDTLHFRTTFLPSEDTMEETLKVLASAHNKFMDDHRD 501          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A097ITX3_SCYLO (Alanine transaminase n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A097ITX3_SCYLO)

HSP 1 Score: 410 bits (1053), Expect = 8.830e-140
Identity = 196/235 (83.40%), Postives = 212/235 (90.21%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            KLV+LADEVYQ+NIWKEGASFSSFKKVACDMGY GEDGD+RLQLVSFHSTSKGYFGECGLRGGYMEVHGIG EVRAELYKLASLSLC NT+GQLA GIM+NPPK GDPSFETFQKERDDILSSL RRS+MVH+A+N LEGITCN ADGALY FPRIRLS+KAK AA A G+P DEYYCLQILD +GI+LVPGSGF QE+ TLHFRTTFL AE+TM +TL + A AH KFMD HRD
Sbjct:  266 KLVVLADEVYQANIWKEGASFSSFKKVACDMGYTGEDGDDRLQLVSFHSTSKGYFGECGLRGGYMEVHGIGAEVRAELYKLASLSLCSNTVGQLATGIMINPPKPGDPSFETFQKERDDILSSLERRSIMVHKALNDLEGITCNEADGALYAFPRIRLSDKAKRAAEANGVPADEYYCLQILDQSGIVLVPGSGFGQEEGTLHFRTTFLPAEETMHETLKIMAKAHEKFMDEHRD 500          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A097ITY2_9PHAE (Alanine transaminase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097ITY2_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 1.990e-135
Identity = 188/235 (80.00%), Postives = 210/235 (89.36%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            K+V+LADEVYQ+NIWK+GASFSSFKKVACDMGY GEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIG EVRAELYKL+SLSLC NT+GQLA G+M+NPPK GDPSFETF++ERD ILSSL+RRS+MVH+A+N+LEGITCN ADGALY FPRIRLS+KA   A  KG+P DEYYCLQ+LD +GI+LVPGSGF QE+ TLHFRTTFL AE+TM  TL  FA AH KFMD HRD
Sbjct:  263 KMVVLADEVYQANIWKKGASFSSFKKVACDMGYSGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGAEVRAELYKLSSLSLCSNTVGQLAAGLMINPPKKGDPSFETFEQERDGILSSLKRRSIMVHKALNELEGITCNEADGALYAFPRIRLSKKASNTAEGKGVPADEYYCLQMLDESGIVLVPGSGFGQEEGTLHFRTTFLPAEETMHDTLKRFAKAHKKFMDEHRD 497          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A097ITY9_SACJA (Alanine transaminase n=3 Tax=Laminariales TaxID=2886 RepID=A0A097ITY9_SACJA)

HSP 1 Score: 395 bits (1016), Expect = 3.680e-134
Identity = 190/235 (80.85%), Postives = 208/235 (88.51%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            KLV++ADEVYQSNIWK+ ASFSSFKKVACDMGY G +GDERLQLVSFHSTSKGY+GECGLRGGYMEVHGIG EVRAELYKL+SLSLC NTIGQLA GIM+NPPK GDPS+ETF KERDDILSSL RRS+MVH A+N LEG+TCNRADGALY FPRIRLS KAK+AA AKG+P DE+YCL+ILD +GI+LVPGSGF QE DTLHFRTTFL AE TM +TL   A AH KFMD HRD
Sbjct:  267 KLVVIADEVYQSNIWKKDASFSSFKKVACDMGYTGAEGDERLQLVSFHSTSKGYYGECGLRGGYMEVHGIGAEVRAELYKLSSLSLCSNTIGQLATGIMINPPKKGDPSYETFTKERDDILSSLERRSIMVHTALNDLEGVTCNRADGALYAFPRIRLSNKAKKAAEAKGVPADEFYCLEILDQSGIVLVPGSGFGQEDDTLHFRTTFLPAEATMHETLKNLARAHEKFMDEHRD 501          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A097ITY8_9PHAE (Alanine transaminase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097ITY8_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 4.720e-129
Identity = 181/235 (77.02%), Postives = 207/235 (88.09%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            KLVILADEVYQ+NIWK+GASFSSFKKVACDMG  G+DGD+RLQLVSFHSTSKG+ GECGLRGGYMEVHGIGPEVRAELYKLASLSLC NT+GQLA G+M+NPP+ G+PS+ET++KERDDILSSL RRS MVH+A+N+LEG+TCN A+GALY FPRIRLS++AK+ A  KG+P DEYYCL++LD TGIILVPGSGF QE  TLHFRTTFL AED M  T+   A AH+ FMD HRD
Sbjct:  264 KLVILADEVYQANIWKKGASFSSFKKVACDMGLTGKDGDDRLQLVSFHSTSKGFLGECGLRGGYMEVHGIGPEVRAELYKLASLSLCSNTVGQLATGLMINPPREGEPSYETYRKERDDILSSLERRSRMVHKALNELEGVTCNEAEGALYAFPRIRLSKRAKDVAEGKGLPGDEYYCLKMLDETGIILVPGSGFGQEDGTLHFRTTFLPAEDIMHDTIKRLAKAHAAFMDAHRD 498          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A835ZD97_9STRA (Alanine transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD97_9STRA)

HSP 1 Score: 300 bits (769), Expect = 3.920e-97
Identity = 141/232 (60.78%), Postives = 174/232 (75.00%), Query Frame = 1
Query:    4 LVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRH 699
            LV++ADEVYQ+N+W++   F SFKKVACD+GY  E GD RLQLVSFHSTSKGY GECG+RGGYME+HGI  +++A+LYKLASLSLC NT GQ+ MG+MVNPPK GD S   F KERD IL S+ RR+ ++ +A+N LEG++CN  DGALY FP I LS+KA++ A  +GIP DEYYCL++L+  GII VPGSGF Q   T HFRTTFL  E+     L    + H+ FM  H
Sbjct:  246 LVVIADEVYQANVWQQERPFVSFKKVACDLGYTAEPGDHRLQLVSFHSTSKGYMGECGVRGGYMELHGISDDIKAQLYKLASLSLCSNTAGQVMMGLMVNPPKEGDKSHALFAKERDAILDSMFRRAKLLSDALNTLEGVSCNSVDGALYAFPTITLSKKARDIAKERGIPADEYYCLEMLERAGIIFVPGSGFGQAHGTYHFRTTFLPPENKFPIMLERIKAGHASFMKDH 477          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A6V2S6R4_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2S6R4_HETAK)

HSP 1 Score: 275 bits (703), Expect = 5.370e-90
Identity = 132/238 (55.46%), Postives = 173/238 (72.69%), Query Frame = 1
Query:    4 LVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDG----DERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            L++ ADEVYQ N+W+EG  F SF+KVA +MGY GE+      E LQLVSFHS SKG+ GECGLRGGY +VHGI     A++YKLAS+SLC NT+GQL  G+M   P+ G PSF+ F +ERD IL S+RRR+  +  A+N+LEG++CN A GA+YVFPRI L  +A  AA A+G+  D +YC+++L+ TGII+VPGSGF Q++ T HFRTTFL +E  M   +   A  H+ FMD++RD
Sbjct:   29 LILCADEVYQENVWEEGKEFVSFRKVAIEMGYTGEEEITKPGEGLQLVSFHSVSKGFLGECGLRGGYFQVHGIPAAAAAQVYKLASISLCSNTVGQLTTGLMCALPRPGSPSFKKFARERDAILGSMRRRAGQLGAALNRLEGVSCNSAQGAMYVFPRITLPRRAVAAAAAEGVAPDAFYCMRLLEATGIIVVPGSGFGQQEGTWHFRTTFLPSEARMAGVVDRLARFHAAFMDQYRD 266          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A7S2UXD2_9STRA (Alanine transaminase n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXD2_9STRA)

HSP 1 Score: 276 bits (707), Expect = 7.190e-89
Identity = 130/234 (55.56%), Postives = 173/234 (73.93%), Query Frame = 1
Query:    1 KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHR 702
            KLV+ ADEVYQ NIW E   F+SFKKV  DMG+  E+G+ R QL+SFHSTSKG+ GECGLRGGY E+ G  PEVRA+LYKLAS+SLC NTIGQ+A+G+MV+PPK  D S   ++KE+  IL S++RRS+ + EA+NKLEG++CN + GA+Y FP+I +  KA + A  KG+  D  YC+  L+ TGI++VPGSGF Q + T HFRTTFL ++D +D  +   +  H  FM+++R
Sbjct:  161 KLVLCADEVYQENIWTEVNPFTSFKKVVKDMGFE-EEGENRFQLISFHSTSKGFIGECGLRGGYFEMFGFTPEVRAQLYKLASVSLCSNTIGQIALGLMVDPPKMSDASSAVYEKEKTAILGSMKRRSIKLVEALNKLEGVSCNLSQGAMYAFPQITIPAKAAKEADMKGVKPDVMYCMDCLEATGIVMVPGSGFGQVEGTWHFRTTFLPSDDQIDSVIDKISKFHQCFMEKYR 393          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A176VX62_MARPO (Alanine transaminase n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VX62_MARPO)

HSP 1 Score: 263 bits (671), Expect = 8.600e-82
Identity = 128/234 (54.70%), Postives = 169/234 (72.22%), Query Frame = 1
Query:    4 LVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            L++LADEVYQ NI++E  +F SFKKVA  MG+  +D    L LVS+HS SKGY+GECG RGGYMEV G+  EVR +LYK+AS++LC N  GQ+ M +++NPPK GD S++ F KERD ILSSL RR+ ++ +AMNKLEG+TCN+A+GA+YVFPR+ L E+A +AA A  +  D +Y  ++LD TGI++VPGSGF Q   T HFR T L  E  +   +A F   H +FM+  RD
Sbjct:  302 LLLLADEVYQENIYEETKTFHSFKKVARSMGFFDKD----LSLVSYHSVSKGYYGECGKRGGYMEVTGLDAEVRDQLYKVASVNLCSNITGQILMSLVMNPPKPGDESYDNFTKERDGILSSLARRAQLMTDAMNKLEGVTCNKAEGAMYVFPRLNLPERAMKAAAAVQMLPDVFYARRLLDATGIVVVPGSGFGQVPGTHHFRCTILPQEGKLPDVIAKFTQFHERFMEEFRD 531          
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Match: A0A446KRI3_TRITD (Alanine transaminase n=4 Tax=Triticum TaxID=4564 RepID=A0A446KRI3_TRITD)

HSP 1 Score: 259 bits (662), Expect = 9.160e-82
Identity = 128/234 (54.70%), Postives = 161/234 (68.80%), Query Frame = 1
Query:    4 LVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHSTSKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMVNPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGALYVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKDTLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD 705
            LV+LADEVYQ NI+ E   F SFKK+A  MGY  +D    L LVSF S SKGY+GECG RGGYMEV G   +VR ++YK+AS++LC N  GQ+   +++NPPK GD S+E+F  ERD I+SSL RR+  + EA N LEGITCN+A+GA+Y+FPR+ L +KA  AA A G   D YY L++L  TGI++VPGSGF Q   T HFR T L  ED +   ++ F   H KFMD  RD
Sbjct:  172 LVLLADEVYQENIYVEDKQFHSFKKIARSMGYTDDD----LPLVSFQSVSKGYYGECGKRGGYMEVTGFNADVREQIYKVASVNLCSNISGQILSSLIMNPPKVGDESYESFMVERDGIISSLARRAKALEEAFNSLEGITCNKAEGAMYLFPRLHLPQKAIGAAQAAGAAPDAYYALRLLQATGIVVVPGSGFGQAPGTYHFRCTILPQEDKIPAIISRFKEFHEKFMDEFRD 401          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59891.13519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097ITX1_9PHAE9.060e-14585.96Alanine transaminase n=8 Tax=Sargassum TaxID=3015 ... [more]
A0A097ITX3_SCYLO8.830e-14083.40Alanine transaminase n=6 Tax=Ectocarpales TaxID=28... [more]
A0A097ITY2_9PHAE1.990e-13580.00Alanine transaminase n=1 Tax=Desmarestia viridis T... [more]
A0A097ITY9_SACJA3.680e-13480.85Alanine transaminase n=3 Tax=Laminariales TaxID=28... [more]
A0A097ITY8_9PHAE4.720e-12977.02Alanine transaminase n=1 Tax=Dictyopteris undulata... [more]
A0A835ZD97_9STRA3.920e-9760.78Alanine transaminase n=1 Tax=Tribonema minus TaxID... [more]
A0A6V2S6R4_HETAK5.370e-9055.46Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXD2_9STRA7.190e-8955.56Alanine transaminase n=2 Tax=Fibrocapsa japonica T... [more]
A0A176VX62_MARPO8.600e-8254.70Alanine transaminase n=2 Tax=Marchantia polymorpha... [more]
A0A446KRI3_TRITD9.160e-8254.70Alanine transaminase n=4 Tax=Triticum TaxID=4564 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59891contigH-elongata_contig59891:6..2658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score405.2
Seed ortholog evalue2.1e-110
Seed eggNOG ortholog2880.D7FVQ6
Preferred nameALAT
KEGG rclassRC00006,RC00008
KEGG koko:K00814
KEGG ReactionR00258
KEGG Pathwayko00220,ko00250,ko00710,ko01100,ko01120,ko01200,ko01210,ko01230,map00220,map00250,map00710,map01100,map01120,map01200,map01210,map01230
KEGG ModuleM00171
GOsGO:0000166,GO:0001666,GO:0003674,GO:0003824,GO:0004021,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006522,GO:0006524,GO:0006807,GO:0006950,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0009056,GO:0009063,GO:0009078,GO:0009080,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0016054,GO:0016740,GO:0016769,GO:0017076,GO:0019481,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0036293,GO:0042221,GO:0042851,GO:0042853,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046686,GO:0047635,GO:0050896,GO:0070482,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.alanine aminotransferase
EggNOG OGsCOG0436@1,KOG0258@2759
EC2.6.1.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Hectar predicted targeting categoryother localisation
Exons6
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59891.13519.1prot_H-elongata_contig59891.13519.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59891 6..2658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.9706476-CDS-H-elongata_contig59891:5..831622930969.9706476-CDS-H-elongata_contig59891:5..83Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 6..83 +
1691679645.0349927-CDS-H-elongata_contig59891:5..831691679645.0349927-CDS-H-elongata_contig59891:5..83Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 6..83 +
1622930969.9840405-CDS-H-elongata_contig59891:626..7041622930969.9840405-CDS-H-elongata_contig59891:626..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 627..704 +
1691679645.053995-CDS-H-elongata_contig59891:626..7041691679645.053995-CDS-H-elongata_contig59891:626..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 627..704 +
1622930969.9996903-CDS-H-elongata_contig59891:1106..11691622930969.9996903-CDS-H-elongata_contig59891:1106..1169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 1107..1169 +
1691679645.073219-CDS-H-elongata_contig59891:1106..11691691679645.073219-CDS-H-elongata_contig59891:1106..1169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 1107..1169 +
1622930970.011868-CDS-H-elongata_contig59891:1626..17521622930970.011868-CDS-H-elongata_contig59891:1626..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 1627..1752 +
1691679645.0923617-CDS-H-elongata_contig59891:1626..17521691679645.0923617-CDS-H-elongata_contig59891:1626..1752Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 1627..1752 +
1622930970.0291052-CDS-H-elongata_contig59891:2155..23501622930970.0291052-CDS-H-elongata_contig59891:2155..2350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 2156..2350 +
1691679645.1054568-CDS-H-elongata_contig59891:2155..23501691679645.1054568-CDS-H-elongata_contig59891:2155..2350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 2156..2350 +
1622930970.0501142-CDS-H-elongata_contig59891:2490..26581622930970.0501142-CDS-H-elongata_contig59891:2490..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 2491..2658 +
1691679645.1152139-CDS-H-elongata_contig59891:2490..26581691679645.1152139-CDS-H-elongata_contig59891:2490..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59891 2491..2658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59891.13519.1

>prot_H-elongata_contig59891.13519.1 ID=prot_H-elongata_contig59891.13519.1|Name=mRNA_H-elongata_contig59891.13519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
KLVILADEVYQSNIWKEGASFSSFKKVACDMGYHGEDGDERLQLVSFHST
SKGYFGECGLRGGYMEVHGIGPEVRAELYKLASLSLCPNTIGQLAMGIMV
NPPKAGDPSFETFQKERDDILSSLRRRSLMVHEAMNKLEGITCNRADGAL
YVFPRIRLSEKAKEAATAKGIPTDEYYCLQILDTTGIILVPGSGFKQEKD
TLHFRTTFLAAEDTMDKTLALFASAHSKFMDRHRD*
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mRNA from alignment at H-elongata_contig59891:6..2658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59891.13519.1 ID=mRNA_H-elongata_contig59891.13519.1|Name=mRNA_H-elongata_contig59891.13519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2653bp|location=Sequence derived from alignment at H-elongata_contig59891:6..2658+ (Himanthalia elongata Himel1 dioecious)
AAGCTGGTCATTTTGGCGGACGAAGTGTACCAGTCAAACATATGGAAGGA AGGCGCTTCTTTCTCCTCCTTTAAGAAGGTAATACCACTGAAACTGGCAA CGACCACCAAGACTACACGGTGTAATGGAAATTTTGACAAGTGGCACATT TTCGTGTATCCTAGAAGAGCTGGAGCTGTAGGCTGTCTGCATTATTAGGG ACCAGCCTTCTGCTGCAACATGATCAACTATTTTCTTGTAAAGCTAGGTC GTGTCGATCCATGCCTTTCACATCGATCTTGTTCTGAGACTGCCCTATGG TACTCGCTGCGAGCGTTTGCCAGCAGCAACATACAACGGTACATCGTAGT AGTGCAGTATATATAAAATGGCATATTTTTTGTGAATACAATAATTCACC CCGAGGCCAGCGGGTCAGCTCAGGCCTAGAGCGATATTGTCCGATCGCAT TGTTAGCTCGCTGCCACCCTACCCTTAGCGGCAGGGTGTGATGATTGGAA TCGGTACATAAGCTCTTGAACTCTCTACAAGTGTAATGCTTACCGTTCCA ATTCGTTAGATGCATAGCTGTTTTTACTCGTATTTAGTACGTAAGGGGGT TCCGTGACGCCCGCAACCCAGGTGGCCTGTGATATGGGCTACCACGGCGA GGATGGCGACGAGCGACTGCAGCTTGTCTCTTTCCACTCCACATCGAAGG TGTTCAGATAACTATTGTACTTGATATTGGGGCAAAATTTGATGAGCCCA TGAGAGGTGGGGGGGGGGGTTAAATATAATCAGTTGTGGGGCTGAAAGTA TGACCATACATTAGCATAGGCATTTCAAGGCGCAGATTGCAGTCAATATA CACATGAATATTGCCGTGAAAACGGGTACCATGAATTGCTACCGATTTCA ACTTGGGAGGCAGCTTCTTTTTGAGTGAACTTTAGCAACAGTGTCCTATA GGGTTGTGCTCCCGAGCCTGGAAATATCGCGGATGTTCATATATAGAGCT AAATATTATAAAGAGCCACATCGGTTATCCCTACCACGTTAGCACCTTCG ATGTAGCTGTTCTTCTTTTCCCTCTCTTACATGGCGTGTTCGAATACGCA GGGCTACTTTGGGGAGTGCGGGTTACGTGGGGGTTACATGGAGGTGCATG GAATAGGGCCAGAGGTGAGCCATTTCCGTGAACCGAGTATTTGCACTGTA TAATAGGGGCCGCGCAACCTCCTGGCGTTGATCCGGTGTCACAGTAGTAA TACAAGTGCAGAGGTAGTTTGTAATACTGTTTTCCGTGTTGGAGCTGGTA TAAACCACTGTGTATGCTGGTTGATGGGTAGAGATTCACGTGACTGCTAT TAGGCAAGATTAAAAATCAGAGCAACGTCTATTTACATTAGCCGACATAA GAACTTTGAAGTCCTCGGCCCTCATGCTCTCGTTTTTTAAATACTTTACT AAATGTTAGTAGGCTTGGACATGCCCACACATTCCAGGGAATTTGGCCAC ATGGCAAAATTTAGCTCTAGATACCGCTTTTCGGGGAGCAACACACACTT GCGTCTGTTGGCTTCCGCGTGGATGACTCTCAAAAGCTCTTCCTGTTGTA CTCCTCATTCAAACCTAACAGGTGAGAGCGGAGCTGTATAAGCTAGCATC GTTGTCGCTGTGCCCCAACACCATCGGACAGCTCGCCATGGGCATCATGG TTAACCCTCCAAAGGCCGGCGACCCTTCTTTCGAAACCTTCCAGAAGGTA CTGTACAATTTCCGTGGCCCTCAAAGTGTGACGTGTAAACTTTATAATAC ATTGGATGGGTTTGGTTTATTTTCTACGAATGAAGCAACGCTGTGCCTGC AGACCTAGGGGGATATATCCTTCCCTACCCAATTCACGCCTACGAGCTTT TTTATCGTGATGCAGTTCAGCCCTCCTACACTTCTCATACAACAATGTTG AACTTTGCTTACCCATGTCCTCACGCGTCCCGCGGCACCATTTTACTACG CAGAACAATTACGGTTGTACTTGGTCGTAGTATATATCCTTGCTGCGAAA GAGCTGCCCTGCTGTGCTGCATTCGACGTTTTACTTCGTGCATTGTCTAA GGATTATTCGAATACCACCTCTTTTGTTCCTTACCTTTTCCAACTGACAG GAGCGTGATGACATTTTGTCATCGCTGAGACGCCGAAGCCTGATGGTGCA CGAGGCCATGAATAAGCTGGAAGGAATCACATGCAATAGGGCAGATGGGG CCCTGTATGTTTTCCCACGCATCCGTTTGTCGGAAAAGGCCAAGGAGGCT GCAACAGCCAAGGGCATCCCTACGGATGAATACTACTGCCTCCAGGTAAA ATGACGATACTCGACATGCGGCGCACACACAATATTCGCACTCAATTTAA AGGTGTATAATATTTTTGTTGCTCTACTGAAAATAATTTCCAAACGATGG AAAATATTATATCACGTCGTCCCTTATCGGCGCAGATCCTAGATACGACC GGCATCATTCTGGTCCCTGGAAGCGGATTTAAGCAGGAAAAGGATACTTT ACATTTCCGCACAACCTTCCTCGCCGCAGAGGACACCATGGATAAAACGC TGGCGCTCTTTGCCTCGGCCCACAGCAAATTCATGGACAGGCACCGCGAT TGA
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Coding sequence (CDS) from alignment at H-elongata_contig59891:6..2658+

>mRNA_H-elongata_contig59891.13519.1 ID=mRNA_H-elongata_contig59891.13519.1|Name=mRNA_H-elongata_contig59891.13519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig59891:6..2658+ (Himanthalia elongata Himel1 dioecious)
AAGCTGGTCATTTTGGCGGACGAAGTGTACCAGTCAAACATATGGAAGGA
AGGCGCTTCTTTCTCCTCCTTTAAGAAGAAGCTGGTCATTTTGGCGGACG
AAGTGTACCAGTCAAACATATGGAAGGAAGGCGCTTCTTTCTCCTCCTTT
AAGAAGGTGGCCTGTGATATGGGCTACCACGGCGAGGATGGCGACGAGCG
ACTGCAGCTTGTCTCTTTCCACTCCACATCGAAGGTGGCCTGTGATATGG
GCTACCACGGCGAGGATGGCGACGAGCGACTGCAGCTTGTCTCTTTCCAC
TCCACATCGAAGGGCTACTTTGGGGAGTGCGGGTTACGTGGGGGTTACAT
GGAGGTGCATGGAATAGGGCCAGAGGGCTACTTTGGGGAGTGCGGGTTAC
GTGGGGGTTACATGGAGGTGCATGGAATAGGGCCAGAGGTGAGAGCGGAG
CTGTATAAGCTAGCATCGTTGTCGCTGTGCCCCAACACCATCGGACAGCT
CGCCATGGGCATCATGGTTAACCCTCCAAAGGCCGGCGACCCTTCTTTCG
AAACCTTCCAGAAGGTGAGAGCGGAGCTGTATAAGCTAGCATCGTTGTCG
CTGTGCCCCAACACCATCGGACAGCTCGCCATGGGCATCATGGTTAACCC
TCCAAAGGCCGGCGACCCTTCTTTCGAAACCTTCCAGAAGGAGCGTGATG
ACATTTTGTCATCGCTGAGACGCCGAAGCCTGATGGTGCACGAGGCCATG
AATAAGCTGGAAGGAATCACATGCAATAGGGCAGATGGGGCCCTGTATGT
TTTCCCACGCATCCGTTTGTCGGAAAAGGCCAAGGAGGCTGCAACAGCCA
AGGGCATCCCTACGGATGAATACTACTGCCTCCAGGAGCGTGATGACATT
TTGTCATCGCTGAGACGCCGAAGCCTGATGGTGCACGAGGCCATGAATAA
GCTGGAAGGAATCACATGCAATAGGGCAGATGGGGCCCTGTATGTTTTCC
CACGCATCCGTTTGTCGGAAAAGGCCAAGGAGGCTGCAACAGCCAAGGGC
ATCCCTACGGATGAATACTACTGCCTCCAGATCCTAGATACGACCGGCAT
CATTCTGGTCCCTGGAAGCGGATTTAAGCAGGAAAAGGATACTTTACATT
TCCGCACAACCTTCCTCGCCGCAGAGGACACCATGGATAAAACGCTGGCG
CTCTTTGCCTCGGCCCACAGCAAATTCATGGACAGGCACCGCGATTGAAT
CCTAGATACGACCGGCATCATTCTGGTCCCTGGAAGCGGATTTAAGCAGG
AAAAGGATACTTTACATTTCCGCACAACCTTCCTCGCCGCAGAGGACACC
ATGGATAAAACGCTGGCGCTCTTTGCCTCGGCCCACAGCAAATTCATGGA
CAGGCACCGCGATTGA
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