mRNA_H-elongata_contig59857.13510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59857.13510.1
Unique NamemRNA_H-elongata_contig59857.13510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.220e-100
Identity = 161/293 (54.95%), Postives = 202/293 (68.94%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDT-SVDIAGQALDLTNVIPIAPLEVATRGLGDQPP-----------ARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDIDLDRVLRIGQGNAFQLRLGAIQRIR 843
            RQQG EQ  FR  L  +AEG    DDW++L+    +   A    TFDDAVH+ PTN+ AD WNW RLN LG+P+ARINA HTI  +   S++RFRGLQ+ IFLA+GARVFV+N +W SAGLANGAVG VVHM W EG+TPP   +VV+VR+ENY GPQYFE     D A   +DLTN+ PIAP++V    + DQPP           ARC R+QLPL +AF IT +KS G +LLR  +DIG+SE++DGQ+FTA SR +T+E +LLE   L+R L+IG   +FQ RL AI  +R
Sbjct:  136 RQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVHNIVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDV----MDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVR 424          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 7.760e-99
Identity = 164/293 (55.97%), Postives = 204/293 (69.62%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDT-SVDIAGQALDLTNVIPIAPLEVATRGLGDQPP-----------ARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDIDLDRVLRIGQGNAFQLRLGAIQRIR 843
            RQQG EQ  FR  L  +AEG    DDW++L+    +   A    TFDDAVH+ PTN+ AD WNW RLN LG+P+ARINA HTI  +   S++RFRGLQ+ IFLA+GARVFVNNN+W SAGLANGAVG VVHM W EG+TPP   +VV+VR+ENY GPQYFE     D A   +DLTN+ PIAP++V    + DQPP           ARC R+QLPL +AF IT +KSQG +LLR  +DIG+SE++DGQ+FTA SR +T+E +LLE   L+R L+IG   +FQ RL AI  +R
Sbjct:  540 RQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDV----MDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVR 828          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.180e-94
Identity = 152/269 (56.51%), Postives = 190/269 (70.63%), Query Frame = 1
Query:   73 DDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDT-SVDIAGQALDLTNVIPIAPLEVATRGLGDQPP-----------ARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDIDLDRVLRIGQGNAFQLRLGAIQRIR 843
            DDW++L+    +   A    TFDDAVH+ PTN+ AD WNW RLN LG+P+ARINA HTI  +   S++RFRGLQ+ IFLA+GARVFVNNN W SAGLANGAVG VVHM W EG+TPP   +VV+VR+ENY GPQYFE     D A   +DLTN+ PIAP++V    + DQPP           ARC R+QLPL +AF IT +KSQG +LLR  +DIG+SE++DGQ+FTA SR +T+E +LLE   L+R L+IG   +FQ RL AI  +R
Sbjct:    5 DDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNNWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDV----MDDQPPTGRRRGDGTSIARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVR 269          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 2.500e-83
Identity = 146/298 (48.99%), Postives = 190/298 (63.76%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYF-EDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPA---------------RCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDID-LDRVLRIGQGNAFQLRLGAIQRIR 843
            RQQG  Q  FR  L  +AEG   + DW  L+    +   A    +FD+AVH+ PTN  AD WNW RL  LG+P+ARI+ADH++  +    +DRFRGL+ ++FLAVGARVF+NNN+WTS GLANGA G VVHM W  G  PPS  +VV+VR+ENY G QYF E       G+ +DL NV+PI+P++       D PPA               RC+R QLPL +AF IT HKSQG +LLR  +DIG  E++DGQTFTALSR + ++ +LL+ +  L+R+ RIG    F  RL A+ R+R
Sbjct: 1350 RQQGAAQAAFRETLLRIAEGEATEADWNTLRPRFTTAVDAAERESFDNAVHIFPTNGAADDWNWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEVVHMQWAPGTQPPSLPEVVWVRVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPD----DHPPAALRRRGGGANTNAQGRCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCRALDNMLLQPLFCLERLQRIGTSRTFGARLDALHRVR 1643          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.310e-58
Identity = 99/164 (60.37%), Postives = 119/164 (72.56%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDTS 492
            RQQG EQ  FR  L  +AEG    DDW++L+    +   A    TFDDAVH+ PTN+ AD WNW RLN LG+P+ARINA HTI  +   S++RFRGLQ+ IFLA+GARVFVNNN+W SAGLANGAVG VVHM W EG+TPP   +VV+VR+ENY GPQY  + S
Sbjct: 1281 RQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYSSNHS 1444          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A8D9E7N4_9HEMI (ATP-dependent DNA helicase n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E7N4_9HEMI)

HSP 1 Score: 157 bits (397), Expect = 3.600e-42
Identity = 91/282 (32.27%), Postives = 150/282 (53.19%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDV-VFVRMENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLED-IDLDRVLRIGQGNAFQLRLGAIQRI 840
            RQ G+EQ  FR +L  ++ G    +DW++L    +S         F D + L P N+   A+N ++L  L  PVARI++D+          ++ +GL+  ++L  G+RV +  N+WT  GL NGA+G VV + +  G+ PP    + V ++ ++Y+GP                + N++PI P+    +  G+     C R Q P+ +A+A+T HKSQG +L +  +DIG+ E   G T+ ALSR++ +  L++E   + DR+ RI Q     LR+   QR+
Sbjct:   92 RQNGEEQQFFRDLLDRLSVGQSTLEDWQVLMTREKSRLLRNEIAEFRDCLRLFPNNASVAAYNLQKLESLSQPVARISSDNNNAEAAKADCEKGQGLEKTLYLCKGSRVMLKTNLWTKKGLVNGALGTVVDIVYGSGKVPPEDRPLAVCIKFDSYTGPL---------------MKNIVPIGPVTRCWKS-GN---VSCTRSQFPIILAWAVTIHKSQGLTLPKVALDIGTKELAPGCTYVALSRVKRLTDLIIEPGFNYDRLTRIQQMKLLALRVQEEQRL 354          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A8D8ZAT2_9HEMI (ATP-dependent DNA helicase n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8ZAT2_9HEMI)

HSP 1 Score: 157 bits (397), Expect = 9.180e-40
Identity = 91/282 (32.27%), Postives = 150/282 (53.19%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDV-VFVRMENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLED-IDLDRVLRIGQGNAFQLRLGAIQRI 840
            RQ G+EQ  FR +L  ++ G    +DW++L    +S         F D + L P N+   A+N ++L  L  PVARI++D+          ++ +GL+  ++L  G+RV +  N+WT  GL NGA+G VV + +  G+ PP    + V ++ ++Y+GP                + N++PI P+    +  G+     C R Q P+ +A+A+T HKSQG +L +  +DIG+ E   G T+ ALSR++ +  L++E   + DR+ RI Q     LR+   QR+
Sbjct:  629 RQNGEEQQFFRDLLDRLSVGQSTLEDWQVLMTREKSRLLRNEIAEFRDCLRLFPNNASVAAYNLQKLESLSQPVARISSDNNNAEAAKADCEKGQGLEKTLYLCKGSRVMLKTNLWTKKGLVNGALGTVVDIVYGSGKVPPEDRPLAVCIKFDSYTGPL---------------MKNIVPIGPVTRCWKS-GN---VSCTRSQFPIILAWAVTIHKSQGLTLPKVALDIGTKELAPGCTYVALSRVKRLTDLIIEPGFNYDRLTRIQQMKLLALRVQEEQRL 891          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A158P537_TETUR (ATP-dependent DNA helicase n=1 Tax=Tetranychus urticae TaxID=32264 RepID=A0A158P537_TETUR)

HSP 1 Score: 156 bits (395), Expect = 2.020e-39
Identity = 95/253 (37.55%), Postives = 133/253 (52.57%), Query Frame = 1
Query:    1 RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLL 759
            RQ GD+Q  FR +L  +A G      + LL     S        +F++A+++ P  +     N   L   G+PVARI A H          D+  GL  E++L+VG +V + +N+WT  GL NGA+G+V  + + EG  PPS   VV V  ENY+GP Y                  +PI PL+   +  G+       R Q PL VA AITTHKSQG +L +AVVDIG  E   G ++ ALSR++T++GL+L
Sbjct: 1233 RQAGDDQRDFRVLLDEIAMGRISDTSYSLLMSRRASILNPDVVRSFNEAINIFPKKNMVKNHNENHLRQTGNPVARILAMHNAPQGARAKEDQVHGLANELYLSVGCKVMLRSNLWTEVGLVNGALGMVRQIRYKEGDRPPSLPVVVMVEFENYNGPHYSN--------------RCVPIVPLKRQWKD-GE---ISLTRTQFPLIVAHAITTHKSQGLTLDKAVVDIGDKEMMLGLSYVALSRVKTLQGLML 1467          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 9.670e-39
Identity = 90/270 (33.33%), Postives = 141/270 (52.22%), Query Frame = 1
Query:   13 DEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDIDLDRVLRIGQGNAFQLRL 822
            D+Q GF  +L    +G    +DW+LL     +  TA     F+DA  L  +  + + +N ++L  L +PVAR++A HT  +    +AD   GL+ +++LA GA+V ++ N++   GL NG  G VV +   +   PP     V V+ E YSG ++                  +PI+P++   +  G Q     VR QLPL + +AIT HKSQGQ+L +AV+D+G  E   G TF  LSR + +  L++E +  DR+  +G     + RL
Sbjct: 1310 DDQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERY---------RRCVPISPVDTTWQDGGTQ-----VRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARL 1565          
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Match: A0A6S7HMN7_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HMN7_PARCT)

HSP 1 Score: 152 bits (385), Expect = 3.680e-38
Identity = 95/283 (33.57%), Postives = 144/283 (50.88%), Query Frame = 1
Query:    1 RQQGD--EQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAVHLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAEIFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVRMENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVRIQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEGLLLEDIDLDRVLRIGQGNAFQLRLGAIQRIR 843
            RQ GD  E V FR +L  +  G    +DW+LL   +  +TT+     F DA+ L         +N+E+L  LG PVA+I A H+    +  ++D   GL A +FL+  A V +  N+W   GL NG+ G +  + + E   PP+    V V   +Y+GP + +  S             IP+ P        G        R Q+PL + +A+T HKSQGQ+L +AVVD+G  E+  G TF A SR++++  ++ E +  DR+  IG+    Q RL A QR++
Sbjct:  607 RQAGDDHETVAFRALLMRMRNGEVTGEDWKLL---LEHSTTSVPMDQFTDAIRLYFDKKSVAEYNYEKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNLWAEVGLCNGSFGTIEQIWFAENMGPPNLPIAVLVHFHSYTGPAFLDACS-----------KCIPVPPKVFEWVADGKY----LSRQQVPLRLRYAMTIHKSQGQTLTKAVVDLGKGEKVAGCTFVATSRVRSIHDIVFEPMTFDRLKAIGRSKNMQKRLEAEQRLK 871          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59857.13510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDL6_9PHAE1.220e-10054.95ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K558_9PHAE7.760e-9955.97ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KGT1_9PHAE1.180e-9456.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K692_9PHAE2.500e-8348.99ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE7.310e-5860.37ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8D9E7N4_9HEMI3.600e-4232.27ATP-dependent DNA helicase n=1 Tax=Cacopsylla mela... [more]
A0A8D8ZAT2_9HEMI9.180e-4032.27ATP-dependent DNA helicase n=1 Tax=Cacopsylla mela... [more]
A0A158P537_TETUR2.020e-3937.55ATP-dependent DNA helicase n=1 Tax=Tetranychus urt... [more]
A0A6H5L976_9PHAE9.670e-3933.33ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
A0A6S7HMN7_PARCT3.680e-3833.57ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59857contigH-elongata_contig59857:1300..2184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score153.7
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog5111.M1WIQ9
EggNOG free text desc.ATP-dependent DNA helicase PIF1
EggNOG OGs21AWX@147550,39RYU@33154,3G6A9@34397,3P64X@4751,3QU0F@4890,3TKC2@5125,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelClavicipitaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.1245522-CDS-H-elongata_contig59857:1299..15871622930969.1245522-CDS-H-elongata_contig59857:1299..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59857 1300..1587 -
1691679644.6467152-CDS-H-elongata_contig59857:1299..15871691679644.6467152-CDS-H-elongata_contig59857:1299..1587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59857 1300..1587 -
1622930969.1370187-CDS-H-elongata_contig59857:1629..21841622930969.1370187-CDS-H-elongata_contig59857:1629..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59857 1630..2184 -
1691679644.6595626-CDS-H-elongata_contig59857:1629..21841691679644.6595626-CDS-H-elongata_contig59857:1629..2184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59857 1630..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59857.13510.1prot_H-elongata_contig59857.13510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59857 1300..2184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59857.13510.1

>prot_H-elongata_contig59857.13510.1 ID=prot_H-elongata_contig59857.13510.1|Name=mRNA_H-elongata_contig59857.13510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=281bp
RQQGDEQVGFRRVLAHVAEGCGKQDDWELLQVSMRSNTTATTAVTFDDAV
HLSPTNSKADAWNWERLNLLGSPVARINADHTIRSFTTTSADRFRGLQAE
IFLAVGARVFVNNNIWTSAGLANGAVGVVVHMHWPEGRTPPSFSDVVFVR
MENYSGPQYFEDTSVDIAGQALDLTNVIPIAPLEVATRGLGDQPPARCVR
IQLPLAVAFAITTHKSQGQSLLRAVVDIGSSEQTDGQTFTALSRIQTMEG
LLLEDIDLDRVLRIGQGNAFQLRLGAIQRIR
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mRNA from alignment at H-elongata_contig59857:1300..2184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59857.13510.1 ID=mRNA_H-elongata_contig59857.13510.1|Name=mRNA_H-elongata_contig59857.13510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=885bp|location=Sequence derived from alignment at H-elongata_contig59857:1300..2184- (Himanthalia elongata Himel1 dioecious)
CGGCAGCAGGGTGATGAGCAGGTCGGCTTCCGGCGTGTCCTCGCCCACGT TGCGGAAGGCTGCGGGAAGCAGGATGACTGGGAGTTGCTCCAAGTCTCCA TGCGAAGCAACACCACCGCCACGACGGCGGTCACGTTCGACGACGCCGTT CACCTATCCCCCACCAACTCCAAGGCAGACGCTTGGAATTGGGAGAGGCT GAACTTGCTCGGGTCGCCCGTTGCGCGCATCAATGCGGACCACACGATCC GCAGCTTCACAACCACCTCCGCCGACCGCTTCCGAGGTCTCCAGGCGGAA ATTTTCCTCGCCGTAGGCGCCCGTGTGTTTGTCAACAATAACATCTGGAC TTCGGCGGGCCTCGCAAACGGAGCGGTTGGGGTGGTGGTTCACATGCATT GGCCGGAGGGGCGAACCCCCCCGTCGTTTTCCGACGTTGTCTTCGTTCGA ATGGAAAACTACAGCGGCCCGCAGTACTTTGAAGATACGTCCGTCGACAT CGCGGGCCAGGCGCTTGATCTCACAAACGTCATCCCCATCGCCCCGCTGG AGGTTGTCGGCGACCAGCCTCATCCGGCCTGGCGTGGTCACGGCCAGGCA ACGCGGGGCCTGGGGGACCAGCCTCCTGCACGGTGCGTTAGAATTCAACT TCCCCTCGCCGTCGCCTTCGCTATCACCACGCACAAGAGTCAGGGGCAGT CGCTCTTGAGGGCTGTGGTAGACATCGGCAGCTCCGAGCAGACGGACGGG CAGACATTCACCGCCCTCAGCCGTATCCAGACCATGGAGGGGTTGCTATT GGAAGACATTGACCTCGACCGTGTTCTACGCATCGGCCAAGGCAACGCCT TCCAGCTGCGCTTGGGAGCCATCCAACGCATCAGA
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Coding sequence (CDS) from alignment at H-elongata_contig59857:1300..2184-

>mRNA_H-elongata_contig59857.13510.1 ID=mRNA_H-elongata_contig59857.13510.1|Name=mRNA_H-elongata_contig59857.13510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1686bp|location=Sequence derived from alignment at H-elongata_contig59857:1300..2184- (Himanthalia elongata Himel1 dioecious)
CGGCAGCAGGGTGATGAGCAGGTCGGCTTCCGGCGTGTCCTCGCCCACGT
TGCGGAAGGCTGCGGGAAGCAGGATGACTGGGAGTTGCTCCAAGTCTCCA
TGCGAAGCAACACCACCGCCACGACGGCGGTCACGTTCGACGACGCCGTT
CACCTATCCCCCACCAACTCCAAGGCAGACGCTTGGAATTGGGAGAGGCT
GAACTTGCTCGGGTCGCCCGTTGCGCGCATCAATGCGGACCACACGATCC
GCAGCTTCACAACCACCTCCGCCGACCGCTTCCGAGGTCTCCAGGCGGAA
ATTTTCCTCGCCGTAGGCGCCCGTGTGTTTGTCAACAATAACATCTGGAC
TTCGGCGGGCCTCGCAAACGGAGCGGTTGGGGTGGTGGTTCACATGCATT
GGCCGGAGGGGCGAACCCCCCCGTCGTTTTCCGACGTTGTCTTCGTTCGA
ATGGAAAACTACAGCGGCCCGCAGTACTTTGAAGATACGTCCGTCGACAT
CGCGGGCCAGGCGCTTGATCTCACAAACGTCATCCCCATCGCCCCGCTGG
AGGTTCGGCAGCAGGGTGATGAGCAGGTCGGCTTCCGGCGTGTCCTCGCC
CACGTTGCGGAAGGCTGCGGGAAGCAGGATGACTGGGAGTTGCTCCAAGT
CTCCATGCGAAGCAACACCACCGCCACGACGGCGGTCACGTTCGACGACG
CCGTTCACCTATCCCCCACCAACTCCAAGGCAGACGCTTGGAATTGGGAG
AGGCTGAACTTGCTCGGGTCGCCCGTTGCGCGCATCAATGCGGACCACAC
GATCCGCAGCTTCACAACCACCTCCGCCGACCGCTTCCGAGGTCTCCAGG
CGGAAATTTTCCTCGCCGTAGGCGCCCGTGTGTTTGTCAACAATAACATC
TGGACTTCGGCGGGCCTCGCAAACGGAGCGGTTGGGGTGGTGGTTCACAT
GCATTGGCCGGAGGGGCGAACCCCCCCGTCGTTTTCCGACGTTGTCTTCG
TTCGAATGGAAAACTACAGCGGCCCGCAGTACTTTGAAGATACGTCCGTC
GACATCGCGGGCCAGGCGCTTGATCTCACAAACGTCATCCCCATCGCCCC
GCTGGAGGTTGCAACGCGGGGCCTGGGGGACCAGCCTCCTGCACGGTGCG
TTAGAATTCAACTTCCCCTCGCCGTCGCCTTCGCTATCACCACGCACAAG
AGTCAGGGGCAGTCGCTCTTGAGGGCTGTGGTAGACATCGGCAGCTCCGA
GCAGACGGACGGGCAGACATTCACCGCCCTCAGCCGTATCCAGACCATGG
AGGGGTTGCTATTGGAAGACATTGACCTCGACCGTGTTCTACGCATCGGC
CAAGGCAACGCCTTCCAGCTGCGCTTGGGAGCCATCCAACGCATCAGAGC
AACGCGGGGCCTGGGGGACCAGCCTCCTGCACGGTGCGTTAGAATTCAAC
TTCCCCTCGCCGTCGCCTTCGCTATCACCACGCACAAGAGTCAGGGGCAG
TCGCTCTTGAGGGCTGTGGTAGACATCGGCAGCTCCGAGCAGACGGACGG
GCAGACATTCACCGCCCTCAGCCGTATCCAGACCATGGAGGGGTTGCTAT
TGGAAGACATTGACCTCGACCGTGTTCTACGCATCGGCCAAGGCAACGCC
TTCCAGCTGCGCTTGGGAGCCATCCAACGCATCAGA
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